BAC Information

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BAC

Clone NameB6Ng01-094H11
Chromosome10 (Build37)
Map Location 79,315,497 - 79,468,336
singlet/doubletdoublet
Overlap genePtbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7
Upstream geneGA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik
Downstream geneHmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094H11.bB6Ng01-094H11.g
ACCDH905681DH905682
length1,0971,100
definitionDH905681|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H11, 5' end.DH905682|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,315,497 - 79,316,629)(79,467,222 - 79,468,336)
sequence
gaattccaggacaatctgggtcacaaagttgagaatttgtctcaaaaaca
attctagctgggcatggtggcacacacctttgattccagcactcaggaag
caggggcagtggatctatgtgaggccagcctcaggctgggtctctgcagc
gcaggggttgggattcggaattaaatgttccccactgggtaatggaggtc
tgattcggatcaggaagcagataaggaattgaaggtgaacaagaccattc
agtggttccgggaagcaaggcgtggtggggctggccattaactcaggagg
cagatctctgggccttagaggccagcaggagttcggtatagccagggcta
cacacaaaccgttttcataagaaaggttctgggaggtctctgaaatggct
ttcaacaaactctgctagtgtagacctgtgcttcttggacatgagcagcc
tccaacttcactggcagccacccgtgcaggttagcttctgagggtggggc
tcctgcttggcaccagccacccagagaacaaaaactggcagccaacctta
tccctgatggtccagccaggacctgatgggagtcccagagggctcaaatc
ctatgccttgttgtgtgtgtgtatgtgttttctaaatccgcgagacggtc
ctgattagtgattctgggccttcaagctagctgctgtgccggctggctgg
ggcctgaaagacctcactcccagcgcggcctccatggaaatcggcagccg
cccctaatccaggctggaatcctctggcaccaagcccgcgttggggctcc
aagctgttgggcccctggccagatctgcaaggaaaccagtatagccgcca
gcccctttgccccgcctcccacgagccctgtattacagaaaaggaggcca
gtgctctgggctcactcccgtgcaggcggagagaaactttccccttgcct
gcttttttttttttagcagataccagcagacaagatccgatagttgtgct
ttggagtctacaaagatctgtttatagctgactagcttggagaccgtctt
gctttgtgatactcagactgagcagatctgctgctggggtgaaggta
gaattctctatcccaggatctggctgcttcaagaagagcagatcctcgtg
cctaccagcttttgttgtataaactcgcccccctcccaagttatctgtga
ttggttaataaaaatgcccacaggctgtagctgagcagaagagagggagg
tggggcttctgttcctgggtgtggggtcagaggtagagatctctggggtt
cccgacagggaagcagacaaaatagcccagagggttgatatctgcccagc
tctaatgcttttaacacttattataaatataaaggtttgtgtcttttatt
tgggaacaaaatgatctaaggtggggtagaaacctccaaataatatttac
agcagcaggagagacattgttactgtgacccacctagctctatgcaggcc
agagatggtctcctttccccacttgagtgttctgcagtgccctagtcagt
ccctgatgccctccccaccatggagggaacctctataggccagctcacca
gagaggtggcgtgtctgtgtgtcccgcttgagggtaagccccacatcccg
tatcagacgttcccgctcggggcccatggcggctgcactcacgcctttca
aacggccatagaaccaaacatgttcttccactgtcagcctgtggccagga
gtgatggaaagagactctcttgttgtgtgtgtgtgtctcggaggatgcca
gccccctcccaccgcctccatccaagcccaccagaactcacatatcaaac
agcacattgtactgcgggcagatgcccaggtggggccggatggctgccat
gttggtttgtacatcatggcccaggatggaggccgagccactactgggtg
ggaagagaccactcaaaatggacctgtgggtttggggtctgagaagtggc
ccttcatggaaggaagatccacccacaagttcaggcaccttccacagggt
accggactcctcaaccccagttgcctagggatctatgggaaagctgagcc
tgggaaagaagcatagtggcctgcagctcacagtggttgtctgccagccc
gttgtgaccaaaaaggcagggatgtgccttcgtaaagtcaaggttgagtc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79315497_79316629
seq2: B6Ng01-094H11.b_47_1143

seq1  GAATTCCAGGACAATCTGGGTCACAAAGTTGAGAATTTGTCTCAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAATCTGGGTCACAAAGTTGAGAATTTGTCTCAAAAACA  50

seq1  ATTCTAGCTGGGCATGGTGGCACACACCTTTGATTCCAGCACTCAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGCTGGGCATGGTGGCACACACCTTTGATTCCAGCACTCAGGAAG  100

seq1  CAGGGGCAGTGGATCTATGTGAGGCCAGCCTCAGGCTGGGTCTCTGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGTGGATCTATGTGAGGCCAGCCTCAGGCTGGGTCTCTGCAGC  150

seq1  GCAGGGGTTGGGATTCGGAATTAAATGTTCCCCACTGGGTAATGGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGTTGGGATTCGGAATTAAATGTTCCCCACTGGGTAATGGAGGTC  200

seq1  TGATTCGGATCAGGAAGCAGATAAGGAATTGAAGGTGAACAAGACCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCGGATCAGGAAGCAGATAAGGAATTGAAGGTGAACAAGACCATTC  250

seq1  AGTGGTTCCGGGAAGCAAGGCGTGGTGGGGCTGGCCATTAACTCAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCCGGGAAGCAAGGCGTGGTGGGGCTGGCCATTAACTCAGGAGG  300

seq1  CAGATCTCTGGGCCTTAGAGGCCAGCAGGAGTTCGGTATAGCCAGGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGGGCCTTAGAGGCCAGCAGGAGTTCGGTATAGCCAGGGCTA  350

seq1  CACACAAACCGTTTTCATAAGAAAGGTTCTGGGAGGTCTCTGAAATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACCGTTTTCATAAGAAAGGTTCTGGGAGGTCTCTGAAATGGCT  400

seq1  TTCAACAAACTCTGCTAGTGTAGACCTGTGCTTCTTGGACATGAGCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAACTCTGCTAGTGTAGACCTGTGCTTCTTGGACATGAGCAGCC  450

seq1  TCCAACTTCACTGGCAGCCACCCGTGCAGGTTAGCTTCTGAGGGTGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTCACTGGCAGCCACCCGTGCAGGTTAGCTTCTGAGGGTGGGGC  500

seq1  TCCTGCTTGGCACCAGCCACCCAGAGAACAAAAACTGGCAGCCAACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTGGCACCAGCCACCCAGAGAACAAAAACTGGCAGCCAACCTTA  550

seq1  TCCCTGATGGTCCAGCCAGGACCTGATGGGAGTCCCAGAGGGCTCAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATGGTCCAGCCAGGACCTGATGGGAGTCCCAGAGGGCTCAAATC  600

seq1  CTATGCCTTGTTGTGTGTGTGTATGTGTTTTCTAAATCCGCGAGACGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCTTGTTGTGTGTGTGTATGTGTTTTCTAAATCCGCGAGACGGTC  650

seq1  CTGATTAGTGATTCTGGGCCTTCAAGCTAGCTGCTGTGCCGGCTGGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAGTGATTCTGGGCCTTCAAGCTAGCTGCTGTGCCGGCTGGCTGG  700

seq1  GGCCTGAAAGACCTCACTCCCAGCGCGGCCTCCATGGAAATCGGCAGCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAAGACCTCACTCCCAGCGCGGCCTCCATGGAAATCGGCAGCCG  750

seq1  CCCCTAATCCAGGCTGGAATCCTCTGGCACCAAGCCCGCGTTGGGGCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATCCAGGCTGGAATCCTCTGGCACCAAGCCCGCGTTGGGGCTCC  800

seq1  AAGGCTGTTGGGCCCCTGGCCAGATCTGCAAGGAAACCAGTATAGCCGCC  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-GCTGTTGGGCCCCTGGCCAGATCTGCAAGGAAACCAGTATAGCCGCC  849

seq1  AGCCCCTTTGCCCCGCCTCCCACGAGCCCTGTATTACAGAAAAGGGAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCCCCTTTGCCCCGCCTCCCACGAGCCCTGTATTACAGAAAA-GGAGGC  898

seq1  CAGTGCTCTGGGCTCACCTCCCGTGCAGGGCGGAGGAGAAACTTTTCCCC  950
      |||||||||||||||| |||||||||| |||||| ||||||||||  |||
seq2  CAGTGCTCTGGGCTCA-CTCCCGTGCA-GGCGGA-GAGAAACTTT--CCC  943

seq1  CTTGCCTGGCTTTTTTTTTTTTTTTAGCAGATAACCAGGCAGACAAGAAT  1000
      ||||||||     ||||||||||||||||||| |||| ||||||||| ||
seq2  CTTGCCTG----CTTTTTTTTTTTTAGCAGAT-ACCA-GCAGACAAG-AT  986

seq1  CCGGATAGTTTGTGCCTTTGGGAGTCCTACCAAAGGATCTGTTTTATAGC  1050
      || ||||| ||||||  || ||||| ||||  || |||||| ||||||| 
seq2  CC-GATAG-TTGTGC--TTTGGAGT-CTAC--AAAGATCTG-TTTATAG-  1027

seq1  CTGCACTAGGCCTTGGAGAACCCGTCTTGCTTTGTGATACCCCAGGACTG  1100
      ||| |||||  ||||||||  ||||||||||||||||||| |   |||||
seq2  CTG-ACTAG--CTTGGAGA--CCGTCTTGCTTTGTGATACTC--AGACTG  1070

seq1  GAAGGCAGAATCCTGGCTGCTGGGGTGAAGGTA  1133
          |||| |||   ||||||||||||||||||
seq2  ---AGCAG-ATC--TGCTGCTGGGGTGAAGGTA  1097

seq1: chr10_79467222_79468336
seq2: B6Ng01-094H11.g_68_1167 (reverse)

seq1  GACTCAACCTTGACTTCTACGAAGGCCACATCACTGCCTTTTTGGGTCAC  50
      |||||||||||||||| |||||||| |||||| |||||||||| ||||||
seq2  GACTCAACCTTGACTT-TACGAAGG-CACATCCCTGCCTTTTT-GGTCAC  47

seq1  AACGGGGCTGGCAAGACAACCACACTGTGAGCTGCCAGCCACTATGCTGT  100
      ||| |||||||| |||||||  |||||||||||||  ||||||||||| |
seq2  AAC-GGGCTGGC-AGACAAC--CACTGTGAGCTGCAGGCCACTATGCT-T  92

seq1  CTTTCCCAGGCCTCAGCTTTCCCATTGGTTCCCTAGGCAACTGGGGTTGG  150
      |||||||||| ||||||||||||| | | ||||||||||||||||||| |
seq2  CTTTCCCAGG-CTCAGCTTTCCCA-TAGATCCCTAGGCAACTGGGGTT-G  139

seq1  AGGAGTTCCCGGTACCCTGTGGAAGGTGCCCTGAACTTGTGGGTGGATCT  200
      ||||||  |||||||||||||||||||| |||||||||||||||||||||
seq2  AGGAGT--CCGGTACCCTGTGGAAGGTG-CCTGAACTTGTGGGTGGATCT  186

seq1  TCCTTCCATGAAGGGCCACTTCTCAGACCCCCAAACCCACAGGTCCATTT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCTTCCATGAAGGGCCACTTCTCAGA-CCCCAAACCCACAGGTCCATTT  235

seq1  TGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCTCCATCCTGGGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCTCCATCCTGGGCCAT  285

seq1  GATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCC  335

seq1  GCAGTACAATGTGCTGTTTGATATGTGAGTTCTGGTGGGCTTGGATGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACAATGTGCTGTTTGATATGTGAGTTCTGGTGGGCTTGGATGGAG  385

seq1  GCGGTGGGAGGGGGCTGGCATCCTCCGAGACACACACACACAACAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGGAGGGGGCTGGCATCCTCCGAGACACACACACACAACAAGAGA  435

seq1  GTCTCTTTCCATCACTCCTGGCCACAGGCTGACAGTGGAAGAACATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTCCATCACTCCTGGCCACAGGCTGACAGTGGAAGAACATGTTT  485

seq1  GGTTCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATGGGCCCCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATGGGCCCCGAG  535

seq1  CGGGAACGTCTGATACGGGATGTGGGGCTTACCCTCAAGCGGGACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAACGTCTGATACGGGATGTGGGGCTTACCCTCAAGCGGGACACACA  585

seq1  GACACGCCACCTCTCTGGTGAGCTGGCCTATAGAGGTTCCCTCCATGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGCCACCTCTCTGGTGAGCTGGCCTATAGAGGTTCCCTCCATGGTG  635

seq1  GGGAGGGCATCAGGGACTGACTAGGGCACTGCAGAACACTCAAGTGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCATCAGGGACTGACTAGGGCACTGCAGAACACTCAAGTGGGGA  685

seq1  AAGGAGACCATCTCTGGCCTGCATAGAGCTAGGTGGGTCACAGTAACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACCATCTCTGGCCTGCATAGAGCTAGGTGGGTCACAGTAACAAT  735

seq1  GTCTCTCCTGCTGCTGTAAATATTATTTGGAGGTTTCTACCCCACCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTGCTGCTGTAAATATTATTTGGAGGTTTCTACCCCACCTTAG  785

seq1  ATCATTTTGTTCCCAAATAAAAGACACAAACCTTTATATTTATAATAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTGTTCCCAAATAAAAGACACAAACCTTTATATTTATAATAAGT  835

seq1  GTTAAAAGCATTAGAGCTGGGCAGATATCAACCCTCTGGGCTATTTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGCATTAGAGCTGGGCAGATATCAACCCTCTGGGCTATTTTGTC  885

seq1  TGCTTCCCTGTCGGGAACCCCAGAGATCTCTACCTCTGACCCCACACCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCTGTCGGGAACCCCAGAGATCTCTACCTCTGACCCCACACCCA  935

seq1  GGAACAGAAGCCCCACCTCCCTCTCTTCTGCTCAGCTACAGCCTGTGGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAAGCCCCACCTCCCTCTCTTCTGCTCAGCTACAGCCTGTGGGC  985

seq1  ATTTTTATTAACCAATCACAGATAACTTGGGAGGGGGGCGAGTTTATACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTAACCAATCACAGATAACTTGGGAGGGGGGCGAGTTTATACA  1035

seq1  ACAAAAGCTGGTAGGCACGAGGATCTGCTCTTCTTGAAGCAGCCAGATCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCTGGTAGGCACGAGGATCTGCTCTTCTTGAAGCAGCCAGATCC  1085

seq1  TGGGATAGAGAATTC  1115
      |||||||||||||||
seq2  TGGGATAGAGAATTC  1100