BAC Information

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BAC

Clone NameB6Ng01-094L21
Chromosome10 (Build37)
Map Location 78,847,212 - 78,848,390
singlet/doubletsinglet
Overlap geneEG624845
Upstream geneLOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709
Downstream geneEG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094L21.bB6Ng01-094L21.g
ACCDH905878DH905879
length1,1811,158
definitionDH905878|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L21, 5' end.DH905879|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttagtggaattttttggtcacttaagtatactatcatatcatc
tacaaatagtgatattttgatttcttcctttccaatttgtatccctttga
tatccttttgttgtttaattggtttggcttgaacttcaagtactatattg
aatagatagggagagagtgggcagccttgtctagtccctgaatttagtgg
gattgcttcgagtttctctccatttagtttgatgttggctactggtttgc
tgtatattgcttttactatgtttaggaatgggccttgaattcctgatctt
tccaagacttttaacatggagggatgctgaattttgtcaaatggtttctc
tgcatctaatgaaatgatcatgtgttttttttcctttgagtttatgtagt
ggattacattgatagatttctatatattgaaccatccctgcatccctggg
atgaagcctacttgatcatgatggatgatcgttttgatgtgttcttggat
tcggtttgcgagaattttattgagtatttttgcatctatattcataaggg
aaattggtctgaagttctctttctttgttggatctttgtgtggtttaggt
atcagagtaattgtggcttcatagaacaaattggatagagtaccttctgt
ttctattttgtggaatagtttaaggaggattggtactaggtcttctttga
aggtatgatagagctctgcactaaacccatccggtcctgggctttttttt
ttttttttttctttcttttagttgggagactattaatgactattcctact
tgttaagggatatgggaccatttagaacatttatctgatcctgacttaac
tttggtacctgatgtgggtctagaaaattgtccatttcatccagattttc
cagttttgttgaatatagtcttttttagtaggattttttggatttccttg
ttctgttggtttatcctctcctttcattctgattggttaatagattcagt
ctctcgtgcccctctgaagtttggctaaagggtatctattctttttgaat
ttctcaaagaaccaggctctggctgtgatcttgtttaagtctcttgttcc
ttggtattcagccgatgatatccggcctcatccttgggatggtctcgtca
gactcgaaagtcagtagtgcaggagtcatca
gaattcattccacaactgagctgccttctttggccagagtggaagaggat
gtggctaatcctggagaatcttggtgtgccagggtggcaggataaatagt
ggttgcacacccttccagcagagaaggggaggggggactctttgggggtg
aaccaggaggggcagcatttgatgtataaatggaataaaatattaattaa
tggaaaaataactaacatcacaaatggcctataaaacgtgggttgtggca
ggtggtccttagttgttaagaatctaaggtgagaaagacactattaccaa
acagtaaacagaaatagtgcgtgttctccatttccattactttctcaaag
gttgtgcttcaactccagtacgtatttccactcatgataaacctttctat
ccacaatttgctatggtcatgctgttttatcacggtaagtcacttagctt
agacagtcacattcaattttcaggtggcctttgatttcaagcctttgaca
aataaagaacaaagtgattatttcccttttatacttaactgtattgttgg
aaacatataggcaacaaaattaatatgaggatagaaaaatttcatttgga
acatcacattttgagggtagagttccctaaggcagaggattatgacagtg
ctgattttaggacactgggcagatttcattaaattcaggaaaaggaaagt
gatggccgttgctgaccaaaggtcatttccactttcattcaatgggccaa
tgggagtcaaacagcaaaaaccaacatatttagatagtaattttaattaa
tatactttctgtattacaaaatatatactttacttgtgcactaattaaga
gctaagtgttttgtatcttgtatttaatatttttcagattctcactctgt
atgcagtgagagctgcaatcctggattcagaagttgccctgagagcaagc
tacctgttgctttgactgcactcttgcccagaacaatgagattttcaatg
aaacaggtgaagacaagtttctcagaggattttccattctttctacagtg
ctctcccaaactaggtaaagaatattgagaacaaggaaccatgcataacg
tactcagctaacactgaatctttttaacgtatgttcataataaccatagg
aatgactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_78847212_78848390
seq2: B6Ng01-094L21.g_66_1223

seq1  GAATTCATTCCACAACTGAGCTGCCTTCTTTGGCCAGAGTGGAAGAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCACAACTGAGCTGCCTTCTTTGGCCAGAGTGGAAGAGGAT  50

seq1  GTGGCTAATCCTGGAGAATCTTGGTGTGCCAGGGTGGCAGGATAAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAATCCTGGAGAATCTTGGTGTGCCAGGGTGGCAGGATAAATAGT  100

seq1  GGTTGCACACCCTTCCAGCAGAGAAGGGGAGGGGGGACTCTTTGGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCACACCCTTCCAGCAGAGAAGGGGAGGGGGGACTCTTTGGGGGTG  150

seq1  AACCAGGAGGGGCAGCATTTGATGTATAAATGGAATAAAATATTAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAGGGGCAGCATTTGATGTATAAATGGAATAAAATATTAATTAA  200

seq1  TGGAAAAATAACTAACATCACAAATGGCCTATAAAACGTGGGTTGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATAACTAACATCACAAATGGCCTATAAAACGTGGGTTGTGGCA  250

seq1  GGTGGTCCTTAGTTGTTAAGAATCTAAGGTGAGAAAGACACTATTACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCCTTAGTTGTTAAGAATCTAAGGTGAGAAAGACACTATTACCAA  300

seq1  ACAGTAAACAGAAATAGTGCGTGTTCTCCATTTCCATTACTTTCTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAACAGAAATAGTGCGTGTTCTCCATTTCCATTACTTTCTCAAAG  350

seq1  GTTGTGCTTCAACTCCAGTACGTATTTCCACTCATGATAAACCTTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTTCAACTCCAGTACGTATTTCCACTCATGATAAACCTTTCTAT  400

seq1  CCACAATTTGCTATGGTCATGCTGTTTTATCACGGTAAGTCACTTAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTTGCTATGGTCATGCTGTTTTATCACGGTAAGTCACTTAGCTT  450

seq1  AGACAGTCACATTCAATTTTCAGGTGGCCTTTGATTTCAAGCCTTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCACATTCAATTTTCAGGTGGCCTTTGATTTCAAGCCTTTGACA  500

seq1  AATAAAGAACAAAGTGATTATTTCCCTTTTATACTTAACTGTATTGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAACAAAGTGATTATTTCCCTTTTATACTTAACTGTATTGTTGG  550

seq1  AAACATATAGGCAACAAAATTAATATGAGGATAGAAAAATTTCATTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATAGGCAACAAAATTAATATGAGGATAGAAAAATTTCATTTGGA  600

seq1  ACATCACATTTTGAGGGTAGAGTTCCCTAAGGCAGAGGATTATGACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACATTTTGAGGGTAGAGTTCCCTAAGGCAGAGGATTATGACAGTG  650

seq1  CTGATTTTAGGACACTGGGCAGATTTCATTAAATTCAGGAAAAGGAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTAGGACACTGGGCAGATTTCATTAAATTCAGGAAAAGGAAAGT  700

seq1  GATGGCCGTTGCTGACCAAAGGTCATTTCCACTTTCATTCAAT-GGCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATGGCCGTTGCTGACCAAAGGTCATTTCCACTTTCATTCAATGGGCCAA  750

seq1  T-GGAGTCAAACAGCAAAAACCAACATATTTAGATAGTAATTTTAATTAA  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCAAACAGCAAAAACCAACATATTTAGATAGTAATTTTAATTAA  800

seq1  TATACTTTCTGTATTACAAAATATATACTTTACTTGTGCACTAATTAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTCTGTATTACAAAATATATACTTTACTTGTGCACTAATTAAGA  850

seq1  GCTAAGTGTTTTGTATCTTGTATTTAATATTTTTCAGATTCCTCACTCTG  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTAAGTGTTTTGTATCTTGTATTTAATATTTTTCAGATT-CTCACTCTG  899

seq1  TATGCAGTGAGAGCTGCAATCCTGGATTCAGGAAAGTTGCCCTGGAGAGC  948
      |||||||||||||||||||||||||||||||  |||||||||| ||||||
seq2  TATGCAGTGAGAGCTGCAATCCTGGATTCAG--AAGTTGCCCT-GAGAGC  946

seq1  AAGCCTACCTGTTGCTTTGACTGCACTCCTTGCCCAG-ACAATGAGATTT  997
      ||| ||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  AAG-CTACCTGTTGCTTTGACTGCACT-CTTGCCCAGAACAATGAGATTT  994

seq1  CCAATGAAACAGGTGAAGGACAAGTTTCTCAGAGGATTTTCCATTCTTTC  1047
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAATGAAACAGGTGAA-GACAAGTTTCTCAGAGGATTTTCCATTCTTTC  1043

seq1  TACAGTGCTCTCACAAAACTAAGTAAAGGAAAAAAATGAG-ACAAGGGAA  1096
      |||||||||||| | |||||| ||||||   || | |||| ||||||  |
seq2  TACAGTGCTCTC-CCAAACTAGGTAAAG---AATATTGAGAACAAGG--A  1087

seq1  ACACATGGCCATTACGTTACTTCAGTTTAACAACTGAATCTTTTACATGT  1146
      || ||||  ||| ||| ||| ||||  |||| ||||||||||||  | ||
seq2  AC-CATG--CATAACG-TAC-TCAG-CTAAC-ACTGAATCTTTTTAACGT  1130

seq1  ATGTTCTATTAAAATAACACATAGGAATGACTC  1179
      ||||||    | |||||| ||||||||||||||
seq2  ATGTTC----ATAATAAC-CATAGGAATGACTC  1158