BAC Information

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BAC

Clone NameB6Ng01-094O08
Chromosome10 (Build37)
Map Location 20,035,604 - 20,183,908
singlet/doubletdoublet
Overlap geneBclaf1, 2610016C23Rik, LOC382344, Pde7b
Upstream geneOlig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094O08.bB6Ng01-094O08.g
ACCDH905987DH905988
length1,1371,101
definitionDH905987|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O08, 5' end.DH905988|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,182,767 - 20,183,908)(20,035,604 - 20,036,714)
sequence
gaattcttttaaatggaggttgttaactggaacctcaaaacaaacccgtg
aagaattgagctttcttgttattacatttctattcactaagccaagaaag
gccagtggagccacctgagattttgagaataatctatagcagtgggttct
tatttcagatctttgggagtgactaactaaagaacacagtgggtgaatct
catctaacactaatagctggatctgtaagaaacacccacaacatggaatt
aataataagatgtgtcaccacagtcttgtgacagtgattcttttacaaca
gttttgaactctctattgagtgcctcgcaacacctcaaatcaccttttaa
gataatttgaaatgccttaatggagactattaataaacgagtacctgtac
ttctttaagtaatgattaagtggctccagtaaccatttaccaatagcgtt
gatggcatagataataggacagaataacccaaaggtgatttaaggacaat
gtaagttatataagagaaatgaaaaatcttggaatgaaaagttaagaaaa
ttcttcaactctactacttacattggggatgaagttttcaacaggactga
aaagaacatgcaaaatacaacatggtaatacattattagaaaaactatac
aaaccaaagaatagtgacattgtttcactgcagaaaatgcagttgtcaag
tgggagaatccagtgagaatatcccacaatgctaagctgcaaccatctaa
ttggtgtaggattcaataccatctcctcatcattgtccttcttaacgcgt
ggatatcagttttgctttcgtgtttatattatgctgattaaggatcactt
ccaacaacaaaaggatttcactgttctattacagtgctcggagaaatact
ttgcacactgtattcctgtgcatacattgacagtgtgttgacttgacaac
tacttattgaataagtagtctgaagtgctcattcaaaggatttgttgtga
gtatggcatattccattcttactgagatggtccatacatggcgaaagtag
tgggtgggaaagtttgacccattcaagaatgtctacaaacatgagataca
tctgaatgtttttctgtctttcttgtttccaaaaata
gaattccaggacagccaggggtgtatagagaaaccctgtttcaaaaaacc
aaataaatcaacagctaagataattaagtggatttccatattctgcttat
tttcagaattttgtattttgtttgtttattctgtgatacattttatttta
ttttatttttttatttttttatttttttttagatttatttatttattata
tgtaagtacactgtagctgtcttcagacactccagaagagggagtcagat
ctcgttagggatggttgtgagccaccatgtggttgctgggatttcttcgg
aagagcagtcgggtgctcttacccactgagccactgtgatacattttaaa
tcaaacttgcaaacattttattaaacatccctggaatgacttttatagaa
tacttgttaatactatattgaaaacataggaaaaagcttaaatagacaag
tttttgaaataaattatgggtagcctgtagaaaccctataaaaaggctaa
ccagaaattataactaatggcagagcacacaccatgtgccgggttagcct
tttctatttattatttaaccataaacttgcaaataccttattttatacaa
agattgaaagagatcaagataccaaatgttgagctgtcatttaatgagtg
agtattagctacggtgtatttttctattttaaaagatgtgatggcagtaa
tttgctttaagtttgggtgctaatattgctaaatgaagacttatgtttga
aattgtaagcagctttgtgttagttttttgtttttgtttgttgttttgtt
tttgttttaaaattttgtttttgaggaagctctaacttgattagccttaa
ctgagagccttctctatagactgaacttaactgagagccttcgctatgga
ctgaactgttcttgaactgtgggatactctgtctctgcctttgagtccta
ggacagagactggatttattagatgggatacatacatagccttacaacaa
tttttttttcctttttacttttgaggtagccaggctttggaagtatttgt
ccaccccgctgagtcactgttttctggccactttaccacattattccaaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20182767_20183908
seq2: B6Ng01-094O08.b_47_1183 (reverse)

seq1  TATTTTGTGAAAACAAGGAAAGACAGAAAAACATTCAGGATG-ATCTCAT  49
      |||||| || |||||| |||||||||||||||||||| |||| |||||||
seq2  TATTTT-TGGAAACAA-GAAAGACAGAAAAACATTCA-GATGTATCTCAT  47

seq1  GTTTGTAGAACATCTTTGAAATGGGTCAAACTTTCCCA-CCACTACTGTC  98
      |||||||| ||||  ||| ||||||||||||||||||| |||||||| ||
seq2  GTTTGTAG-ACATTCTTG-AATGGGTCAAACTTTCCCACCCACTACTTTC  95

seq1  GCCATGTATGGACCATCTCAGTAAGAATGGAATATGCCATACTTCACAAC  148
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCATGTATGGACCATCTCAGTAAGAATGGAATATGCCATAC-TCACAAC  144

seq1  AAATCCTTTGAATGAGCACTTCAGACTACTTATTCAATAAGTAGTTGTCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTGAATGAGCACTTCAGACTACTTATTCAATAAGTAGTTGTCA  194

seq1  AGTCAACACACTGTCAATGTATTGCACAGGAATACAGTGTGCAAAGTATT  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTCAACACACTGTCAATGTA-TGCACAGGAATACAGTGTGCAAAGTATT  243

seq1  TCTCCGAGCACTGTAATAGAACAGTGAAATCCTTTTGTTGTTGGAAGTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGAGCACTGTAATAGAACAGTGAAATCCTTTTGTTGTTGGAAGTGA  293

seq1  TCCTTAATCAGCATAATATAAACACGAAAGCAAAACTGATATCCACGCGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATCAGCATAATATAAACACGAAAGCAAAACTGATATCCACGCGT  343

seq1  TAAGAAGGACAATGATGAGGAGATGGTATTGAATCCTACACCAATTAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGACAATGATGAGGAGATGGTATTGAATCCTACACCAATTAGAT  393

seq1  GGTTGCAGCTTAGCATTGTGGGATATTCTCACTGGATTCTCCCACTTGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGCTTAGCATTGTGGGATATTCTCACTGGATTCTCCCACTTGAC  443

seq1  AACTGCATTTTCTGCAGTGAAACAATGTCACTATTCTTTGGTTTGTATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATTTTCTGCAGTGAAACAATGTCACTATTCTTTGGTTTGTATAG  493

seq1  TTTTTCTAATAATGTATTACCATGTTGTATTTTGCATGTTCTTTTCAGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAATAATGTATTACCATGTTGTATTTTGCATGTTCTTTTCAGTC  543

seq1  CTGTTGAAAACTTCATCCCCAATGTAAGTAGTAGAGTTGAAGAATTTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAAACTTCATCCCCAATGTAAGTAGTAGAGTTGAAGAATTTTCT  593

seq1  TAACTTTTCATTCCAAGATTTTTCATTTCTCTTATATAACTTACATTGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCATTCCAAGATTTTTCATTTCTCTTATATAACTTACATTGTC  643

seq1  CTTAAATCACCTTTGGGTTATTCTGTCCTATTATCTATGCCATCAACGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCACCTTTGGGTTATTCTGTCCTATTATCTATGCCATCAACGCT  693

seq1  ATTGGTAAATGGTTACTGGAGCCACTTAATCATTACTTAAAGAAGTACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAAATGGTTACTGGAGCCACTTAATCATTACTTAAAGAAGTACAG  743

seq1  GTACTCGTTTATTAATAGTCTCCATTAAGGCATTTCAAATTATCTTAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCGTTTATTAATAGTCTCCATTAAGGCATTTCAAATTATCTTAAAA  793

seq1  GGTGATTTGAGGTGTTGCGAGGCACTCAATAGAGAGTTCAAAACTGTTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTGAGGTGTTGCGAGGCACTCAATAGAGAGTTCAAAACTGTTGT  843

seq1  AAAAGAATCACTGTCACAAGACTGTGGTGACACATCTTATTATTAATTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCACTGTCACAAGACTGTGGTGACACATCTTATTATTAATTCC  893

seq1  ATGTTGTGGGTGTTTCTTACAGATCCAGCTATTAGTGTTAGATGAGATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGGGTGTTTCTTACAGATCCAGCTATTAGTGTTAGATGAGATTC  943

seq1  ACCCACTGTGTTCTTTAGTTAGTCACTCCCAAAGATCTGAAATAAGAACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGTGTTCTTTAGTTAGTCACTCCCAAAGATCTGAAATAAGAACC  993

seq1  CACTGCTATAGATTATTCTCAAAATCTCAGGTGGCTCCACTGGCCTTTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTATAGATTATTCTCAAAATCTCAGGTGGCTCCACTGGCCTTTCT  1043

seq1  TGGCTTAGTGAATAGAAATGTAATAACAAGAAAGCTCAATTCTTCACGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGTGAATAGAAATGTAATAACAAGAAAGCTCAATTCTTCACGGG  1093

seq1  TTTGTTTTGAGGTTCCAGTTAACAACCTCCATTTAAAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAGGTTCCAGTTAACAACCTCCATTTAAAAGAATTC  1137

seq1: chr10_20035604_20036714
seq2: B6Ng01-094O08.g_68_1168

seq1  GAATTCCAGGACAGCCAGGGGTGTATAGAGAAACCCTGTTTCAAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGGTGTATAGAGAAACCCTGTTTCAAAAAACC  50

seq1  AAATAAATCAACAGCTAAGATAATTAAGTGGATTTCCATATTCTGCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCAACAGCTAAGATAATTAAGTGGATTTCCATATTCTGCTTAT  100

seq1  TTTCAGAATTTTGTATTTTGTTTGTTTATTCTGTGATACATTTTATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAATTTTGTATTTTGTTTGTTTATTCTGTGATACATTTTATTTTA  150

seq1  TTTTATTTTTTTATTTTTTTATTTTTTTTTAGATTTATTTATTTATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTTATTTTTTTATTTTTTTTTAGATTTATTTATTTATTATA  200

seq1  TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGAT  250

seq1  CTCGTTAGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTCTTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTAGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTCTTCGG  300

seq1  AAGAGCAGTCGGGTGCTCTTACCCACTGAGCCACTGTGATACATTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTCGGGTGCTCTTACCCACTGAGCCACTGTGATACATTTTAAA  350

seq1  TCAAACTTGCAAACATTTTATTAAACATCCCTGGAATGACTTTTATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTGCAAACATTTTATTAAACATCCCTGGAATGACTTTTATAGAA  400

seq1  TACTTGTTAATACTATATTGAAAACATAGGAAAAAGCTTAAATAGACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTAATACTATATTGAAAACATAGGAAAAAGCTTAAATAGACAAG  450

seq1  TTTTTGAAATAAATTATGGGTAGCCTGTAGAAACCCTATAAAAAGGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAATAAATTATGGGTAGCCTGTAGAAACCCTATAAAAAGGCTAA  500

seq1  CCAGAAATTATAACTAATGGCAGAGCACACACCATGTGCCGGGTTAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATTATAACTAATGGCAGAGCACACACCATGTGCCGGGTTAGCCT  550

seq1  TTTCTATTTATTATTTAACCATAAACTTGCAAATACCTTATTTTATACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTATTATTTAACCATAAACTTGCAAATACCTTATTTTATACAA  600

seq1  AGATTGAAAGAGATCAAGATACCAAATGTTGAGCTGTCATTTAATGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAAAGAGATCAAGATACCAAATGTTGAGCTGTCATTTAATGAGTG  650

seq1  AGTATTAGCTACGGTGTATTTTTCTATTTTAAAAGATGTGATGGCAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGCTACGGTGTATTTTTCTATTTTAAAAGATGTGATGGCAGTAA  700

seq1  TTTGCTTTAAGTTTGGGTGCTAATATTGCTAAATGAAGACTTATGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTAAGTTTGGGTGCTAATATTGCTAAATGAAGACTTATGTTTGA  750

seq1  AATTGTAAGCAGCTTTGTGTTAGTTTTTTGTTTTTGTTTGTTGTTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAGCAGCTTTGTGTTAGTTTTTTGTTTTTGTTTGTTGTTTTGTT  800

seq1  TTTGTTTTTAAAATTTTGTTTTTGAGGAAGCTCTAACTTGATTAGCCTTA  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTG-TTTTAAAATTTTGTTTTTGAGGAAGCTCTAACTTGATTAGCCTTA  849

seq1  ACTGAGAGCCTTCTCTATAGACTGAACTTAACTGAGAGCCTTCGCTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGCCTTCTCTATAGACTGAACTTAACTGAGAGCCTTCGCTATGG  899

seq1  ACTGAACTGTTCTTGAACTTGTTGGGATACTCTTGTCTCTGCCTTTTGAG  950
      |||||||||||||||||||   |||||||||| |||||||||| ||||||
seq2  ACTGAACTGTTCTTGAACT--GTGGGATACTC-TGTCTCTGCC-TTTGAG  945

seq1  TCCTAGGACAAGAGACTGGATTTA-TAGATGGGATACATACAATGCCTTT  999
      ||||||||| |||||||||||||| |||||||||||||||||  ||| ||
seq2  TCCTAGGAC-AGAGACTGGATTTATTAGATGGGATACATACATAGCC-TT  993

seq1  ACAACAATTTTTTTTTCTTTTTAACTTTTTGAGGTAGCCCAGGCTTTGGA  1049
      ||||||||||||||||| |||| || ||||||||||| ||||||||||||
seq2  ACAACAATTTTTTTTTCCTTTTTAC-TTTTGAGGTAG-CCAGGCTTTGGA  1041

seq1  AGTATTTGT-CACCACGCTTGAAGTCACTTGTTTTCTGGCCACTTTTACA  1098
      ||||||||| |||| ||||   |||||| |||||||||||||||||  ||
seq2  AGTATTTGTCCACCCCGCT--GAGTCAC-TGTTTTCTGGCCACTTTACCA  1088

seq1  CATTATTCCAAAA  1111
      |||||||||||||
seq2  CATTATTCCAAAA  1101