BAC Information

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BAC

Clone NameB6Ng01-094P04
Chromosome10 (Build37)
Map Location 114,864,832 - 114,955,769
singlet/doubletdoublet
Overlap geneCcdc131, Lgr5
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2
Downstream geneA930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094P04.bB6Ng01-094P04.g
ACCDH906022DH906023
length939930
definitionDH906022|Mus musculus domesticus DNA, BAC clone: B6Ng01-094P04, 5' end.DH906023|Mus musculus domesticus DNA, BAC clone: B6Ng01-094P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,955,196 - 114,955,769)(114,864,832 - 114,865,755)
sequence
gaattccagaattaaaggtcactctttgtctgctctggaatttgatctgc
tgagctgactgaattgctggatttaaggttaagactgagatccatgcgat
ggctcaggagagaaaggcattggccaccaatccaatcaccagaccccaag
tggtggaaggagagaaacaacacccctaaactttcctctgactgctctat
acaaacatgtgagcacacacacacatacacacacacacacacatacacac
atagggtgtagtatacacagatgggcggggaggttggaaagatatgggag
gagttgggtgggggagggtaaaccatgatcagcatatattgtatgaaaca
aatttcattcaaatttttaaactaagaaaaaaaaaacataaataaaagaa
gcaacaaagaccagagagaaaactgagaggttaagtatatatttcattgt
tgcagaggacccaagtttggctcccagcacccaatatcagtatctatgta
taaatccctctccaggagacccatttccttcctctgacctccacatccac
ctacactcacaagcatacacccacacacagatgtgtagctgaaataaaat
aaaacatttttaacaataaaaagaaaaaagaatataacaacaaatgctgg
tagggatggatacagaaggaaatccttatagactgataatgggaaggtaa
actggtccaggacctatgaaaatcaattcagagatttctcaaaaatgaat
aaataaataaataaataaataaataaataaatatataaataaataaaact
agatttgctgtgtgacccaactctaccactcgagggtatttatccacaga
ctctaagtcacataacacaaacatacttgcacatcagtgggctttcagca
ttgttcagttttatataacagagccaatgcaggggccca
gaattccataaccgggtaaggagttaaggtgtttgtttcttgttttgttt
tgtttgtttgttgtaaatgtttgtatataacaaagaaaatttaccaaaga
cggcaaagccactgttttataccgagagctttttctggggccactttact
aacattcactgtccttgctgtgatcagttcttcagagtctaggagcaggt
gccttgtcagtctgtaagagttaaccgatcctggggatgggggaggggct
aagtgaggcccggggtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgt
gtgtgtgtgtgtgatcgatcagctgtgatgtaaagtgaatacatgaatta
atgggaaaaagaaagcaacaaccaaaccaatcagcatatcctttgtagcc
actcttcttgctaagttctgtcaagcaaatgcagccatagggcctcacag
aactgaaaataaggtgctgtttacatttataatagtaaaatctgattaat
ggtgtcctcacaaagggtattataattagtaaagcaaacgggtttgctct
tttttttcagagtctgatttcagtcaatataatgtaacacacaagcgcct
gcttactaaaattcagtgtagccttagatgtgtgctcccacccccctctg
taggatggttctgctgctcatcaggataacccgattaatgtgtgatgtgc
ttctgtgccgttctctatcccaggatctcaaaccatggacattaaagtca
tttttcttacggggattccatgagcgagatgtggcaagtactgttagtcc
cctgacttgcccagcagtgtacagcaagcaaagggtaaactcagggcctg
aaaattcggactcctggcttcctgtcagtgctttgtccatggctcatcct
agaccgtagtttctactttgtatttcggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114955196_114955769
seq2: B6Ng01-094P04.b_47_620 (reverse)

seq1  GTGGGTGTATGCTTGTGAGTGTAGGTGGATGTGGAGGTCAGAGGAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTATGCTTGTGAGTGTAGGTGGATGTGGAGGTCAGAGGAAGGAA  50

seq1  ATGGGTCTCCTGGAGAGGGATTTATACATAGATACTGATATTGGGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTCCTGGAGAGGGATTTATACATAGATACTGATATTGGGTGCTG  100

seq1  GGAGCCAAACTTGGGTCCTCTGCAACAATGAAATATATACTTAACCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAAACTTGGGTCCTCTGCAACAATGAAATATATACTTAACCTCTC  150

seq1  AGTTTTCTCTCTGGTCTTTGTTGCTTCTTTTATTTATGTTTTTTTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCTCTGGTCTTTGTTGCTTCTTTTATTTATGTTTTTTTTTTCT  200

seq1  TAGTTTAAAAATTTGAATGAAATTTGTTTCATACAATATATGCTGATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAAAAATTTGAATGAAATTTGTTTCATACAATATATGCTGATCAT  250

seq1  GGTTTACCCTCCCCCACCCAACTCCTCCCATATCTTTCCAACCTCCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACCCTCCCCCACCCAACTCCTCCCATATCTTTCCAACCTCCCCGC  300

seq1  CCATCTGTGTATACTACACCCTATGTGTGTATGTGTGTGTGTGTGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTGTATACTACACCCTATGTGTGTATGTGTGTGTGTGTGTGTAT  350

seq1  GTGTGTGTGTGCTCACATGTTTGTATAGAGCAGTCAGAGGAAAGTTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGCTCACATGTTTGTATAGAGCAGTCAGAGGAAAGTTTAGG  400

seq1  GGTGTTGTTTCTCTCCTTCCACCACTTGGGGTCTGGTGATTGGATTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGTTTCTCTCCTTCCACCACTTGGGGTCTGGTGATTGGATTGGTG  450

seq1  GCCAATGCCTTTCTCTCCTGAGCCATCGCATGGATCTCAGTCTTAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGCCTTTCTCTCCTGAGCCATCGCATGGATCTCAGTCTTAACCTT  500

seq1  AAATCCAGCAATTCAGTCAGCTCAGCAGATCAAATTCCAGAGCAGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGCAATTCAGTCAGCTCAGCAGATCAAATTCCAGAGCAGACAAA  550

seq1  GAGTGACCTTTAATTCTGGAATTC  574
      ||||||||||||||||||||||||
seq2  GAGTGACCTTTAATTCTGGAATTC  574

seq1: chr10_114864832_114865755
seq2: B6Ng01-094P04.g_67_996

seq1  GAATTCCATAACCGGGTAAGGAGTTAAGGTGTTTGTTTCTTGTTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACCGGGTAAGGAGTTAAGGTGTTTGTTTCTTGTTTTGTTT  50

seq1  TGTTTGTTTGTTGTAAATGTTTGTATATAACAAAGAAAATTTACCAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTGTAAATGTTTGTATATAACAAAGAAAATTTACCAAAGA  100

seq1  CGGCAAAGCCACTGTTTTATACCGAGAGCTTTTTCTGGGGCCACTTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAAGCCACTGTTTTATACCGAGAGCTTTTTCTGGGGCCACTTTACT  150

seq1  AACATTCACTGTCCTTGCTGTGATCAGTTCTTCAGAGTCTAGGAGCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCACTGTCCTTGCTGTGATCAGTTCTTCAGAGTCTAGGAGCAGGT  200

seq1  GCCTTGTCAGTCTGTAAGAGTTAACCGATCCTGGGGATGGGGGAGGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCAGTCTGTAAGAGTTAACCGATCCTGGGGATGGGGGAGGGGCT  250

seq1  AAGTGAGGCCCGGGGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGCCCGGGGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGT  300

seq1  GTGTGTGTGTGTGATCGATCAGCTGTGATGTAAAGTGAATACATGAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGATCGATCAGCTGTGATGTAAAGTGAATACATGAATTA  350

seq1  ATGGGAAAAAGAAAGCAACAACCAAACCAATCAGCATATCCTTTGTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAAAGAAAGCAACAACCAAACCAATCAGCATATCCTTTGTAGCC  400

seq1  ACTCTTCTTGCTAAGTTCTGTCAAGCAAATGCAGCCATAGGGCCTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTTGCTAAGTTCTGTCAAGCAAATGCAGCCATAGGGCCTCACAG  450

seq1  AACTGAAAATAAGGTGCTGTTTACATTTATAATAGTAAAATCTGATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAATAAGGTGCTGTTTACATTTATAATAGTAAAATCTGATTAAT  500

seq1  GGTGTCCTCACAAAGGGTATTATAATTAGTAAAGCAAACGGGTTTGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTCACAAAGGGTATTATAATTAGTAAAGCAAACGGGTTTGCTCT  550

seq1  TTTTTTTCAGAGTCTGATTTCAGTCAATATAATGTAACACACAAGCGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAGAGTCTGATTTCAGTCAATATAATGTAACACACAAGCGCCT  600

seq1  GCTTACTAAAATTCAGTGTAGCCTTAGATGTGTGCTCCCACCCCCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTAAAATTCAGTGTAGCCTTAGATGTGTGCTCCCACCCCCCTCTG  650

seq1  TAGGATGGTTCTGCTGCTCATCAGGATAA-CCGATTAATGTGTGATGTGC  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGGATGGTTCTGCTGCTCATCAGGATAACCCGATTAATGTGTGATGTGC  700

seq1  TTCTGTGCCGTTCTCTATCCCAGGATCTCAAACCATGGACATT-AAGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTGTGCCGTTCTCTATCCCAGGATCTCAAACCATGGACATTAAAGTCA  750

seq1  -TTTTCTTACGGGGATTCCATGAGCGAGATGTGGCAAGTACTGTTAGT-C  796
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTCTTACGGGGATTCCATGAGCGAGATGTGGCAAGTACTGTTAGTCC  800

seq1  CCTGACTTGCCCAGCAGTGTACAGCAAGCAAA-GGTAGACTCA-GGCCTG  844
      |||||||||||||||||||||||||||||||| |||| ||||| ||||||
seq2  CCTGACTTGCCCAGCAGTGTACAGCAAGCAAAGGGTAAACTCAGGGCCTG  850

seq1  AAAACTCGGACTCCTGGCTTCCTGTCAGTGCTTTGTCCATGGCTCATCCC  894
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAATTCGGACTCCTGGCTTCCTGTCAGTGCTTTGTCCATGGCTCAT-CC  899

seq1  TAGACCGTAGTTTCTACTTTGTA-TTCGGAA  924
      ||||||||||||||||||||||| |||||||
seq2  TAGACCGTAGTTTCTACTTTGTATTTCGGAA  930