BAC Information

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BAC

Clone NameB6Ng01-095E09
Chromosome10 (Build37)2 (Build37)
Map Location 72,521,596 - 72,522,833142,775,286 - 142,775,865
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040505, Zwint
Downstream geneLOC432471, LOC544705, LOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095E09.bB6Ng01-095E09.g
ACCDH906259DH906260
length1,2231,007
definitionDH906259|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E09, 5' end.DH906260|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,521,596 - 72,522,833)(142,775,286 - 142,775,865)
sequence
gaattcctttggaaagaggagggaagaaaactttcccttagggtaaaact
gtctggaggggtgccagcttcctagaatgttctactattctgacaggctg
atagcccaattaaatagtcatctccctgtatgcattgcatgcattgctaa
gttgcatgtgaaattgaaaacaactgtctctaggtcttggtttgggttaa
gtaattcatctgtctgaaattatttattaagtgcccattaagtctgttct
ggaagcggtgccaagtactgggataccacagtggaaatcctgagagcccc
tttgtcctcacatgatgctctgtgcagtgtggcaataactggactataaa
tgaatagaaatactacccttcctcaggacataggtgagctcaacacagag
gagcataagaagacttgtgtcaacacaaaattatcttcaaaacaaacaaa
cagacaaacaaacaaagatcttaaagggagaagcatctaccaacttggtc
ccactgctccataggtatctgaaagtgcatcattctctaacatacatgtc
taattatcaccagattaaacatctgttaaatgcccccacccatttctttg
aaatcacagcattgcattttcactgcaaagagaaatattcatggtgtgag
ttcaaaagtacaaaacacgtgtgaatatatcaagacaatttagccaatgt
attagtagtgttttatttcaagaagaaagaagtttaaaaacaatacaatt
aacctatgaacgtgtccttaagggcaacccaatgccttcattgccattat
actcaataataagagagaaaacatctgaacaaaacatgtttagtactcaa
gttcaattctgtgaaaaaatgacccttatgtgatcatacacaaaaagaaa
caaacattaaagaagtttttgttaatgtttgaccacattgtaacattatg
tggatatttgaacattttgtttcagttctctgatttttgatcactgaaga
agaaacacatggtaaacaacagacagcattttgtaagaggaacataaaga
cataatgaaactctaagtaattgatacagagtagtactgatagatttttt
atataaatatgttactgctaagaacaggataatcctactttgaatagttt
ggcctttcatagcactgtttctgggaaagtccgaaaaaaagttactttca
gattcttgtgacgggagaaatct
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcagttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
cattctgtggtttaggtatcagagtaatagtggctacataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggagttatgggactgtttagaaggtcaacttgatcctgattcaacat
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttattctttgaa
tagttcttcttgtttccacttggttgatttcacccctgagttttgattat
ttcctgccgtctactctcttgggtaaatttgcttccttttttctagagct
tttagatgtgttgtcaagctgctagtatgtgctctctcccatttctcttg
gaggcactcagagctatgagtttccctcttagaatgctttcattgtgtcc
aaaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72521596_72522833
seq2: B6Ng01-095E09.b_47_1269 (reverse)

seq1  AGATTTCTCCACTCAAAGAAAATCATGAAAATGTACTTTTTTTTTCTGAG  50
      ||||||||||  ||| | | |||| |||||  |||  ||||||   |  |
seq2  AGATTTCTCCCGTCACA-AGAATC-TGAAA--GTAACTTTTTT---TCGG  43

seq1  ACTTTTCCAGAAACAGGTGCTATGATAGCCAAAACTATCAAAAGTAGAAT  100
      ||||| ||||||||| ||||||||| || | |||||||  ||||||| ||
seq2  ACTTTCCCAGAAACA-GTGCTATGAAAGGCCAAACTATTCAAAGTAGGAT  92

seq1  TATCCTGTCTTAAGCAGTTAACATA-TTATAT-AAATATCTATCAAGTAC  148
      ||||||||  | ||||| ||||||| |||||| ||| ||||||| |||| 
seq2  TATCCTGTTCTTAGCAG-TAACATATTTATATAAAAAATCTATC-AGTA-  139

seq1  CTACTCTGTATCATATACTTAGAGTTTCATTTATGTCTTTATGGTTCTTC  198
      |||||||||||||  |||||||||||||| |||||||||||| |||| ||
seq2  CTACTCTGTATCAATTACTTAGAGTTTCA-TTATGTCTTTAT-GTTCCTC  187

seq1  TAAC-AAATGCTGTCCTGTTTGTTTTACCATGTGTTTTCTTCTTCAGTGA  247
      | || ||||||||| |||||   ||||||||||| |||||||||||||||
seq2  TTACAAAATGCTGT-CTGTT--GTTTACCATGTG-TTTCTTCTTCAGTGA  233

seq1  TCAAAATATCAGAGAACTGAAAC-AAATGTTCAAATATCCACATAATGTT  296
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAAAA-ATCAGAGAACTGAAACAAAATGTTCAAATATCCACATAATGTT  282

seq1  ACAATGTGGTCAAACATTAACAAAAACTTCTTTAATGTTTGTTTCTTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGGTCAAACATTAACAAAAACTTCTTTAATGTTTGTTTCTTTTT  332

seq1  GTGTATGATCACAT-AGGGTCATTTTTTCACAGAATTGAACTTGAGTACT  395
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  GTGTATGATCACATAAGGGTCATTTTTTCACAGAATTGAACTTGAGTAC-  381

seq1  TAAACATGTTTTGTTCAGATGTTTTCTCTCTTATTATTGAGTATAATGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGTTTTGTTCAGATGTTTTCTCTCTTATTATTGAGTATAATGGC  431

seq1  AATGAAGGCATTGGGTTGCCCTTAAGGACACGTTCATAGGTTAATTGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCATTGGGTTGCCCTTAAGGACACGTTCATAGGTTAATTGTAT  481

seq1  TGTTTTTAAACCTTCTTTCTTCTTGAAATAAAACACTACTAATACATTGG  545
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAA-CTTCTTTCTTCTTGAAATAAAACACTACTAATACATTGG  530

seq1  CTAAATTGTCTTGATATATTCACACGTGTTTTGTACTTTTGAACTCACAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGTCTTGATATATTCACACGTGTTTTGTACTTTTGAACTCACAC  580

seq1  CATGAATATTTCTCTTTGCAGTGAAAATGCAATGCTGTGATTTCAAAGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATATTTCTCTTTGCAGTGAAAATGCAATGCTGTGATTTCAAAGAA  630

seq1  ATGGGTGGGGGCATTTAACAGATGTTTAATCTGGTGATAATTAGACATGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGGGGCATTTAACAGATGTTTAATCTGGTGATAATTAGACATGT  680

seq1  ATGTTAGAGAATGATGCACTTTCAGATACCTATGGAGCAGTGGGACCAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGAGAATGATGCACTTTCAGATACCTATGGAGCAGTGGGACCAAG  730

seq1  TTGGTAGATGCTTCTCCCTTTAAGATCTTTGTTTGTTTGTCTGTTTGTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGATGCTTCTCCCTTTAAGATCTTTGTTTGTTTGTCTGTTTGTTT  780

seq1  GTTTTGAAGATAATTTTGTGTTGACACAAGTCTTCTTATGCTCCTCTGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAGATAATTTTGTGTTGACACAAGTCTTCTTATGCTCCTCTGTG  830

seq1  TTGAGCTCACCTATGTCCTGAGGAAGGGTAGTATTTCTATTCATTTATAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCACCTATGTCCTGAGGAAGGGTAGTATTTCTATTCATTTATAG  880

seq1  TCCAGTTATTGCCACACTGCACAGAGCATCATGTGAGGACAAAGGGGCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTATTGCCACACTGCACAGAGCATCATGTGAGGACAAAGGGGCTC  930

seq1  TCAGGATTTCCACTGTGGTATCCCAGTACTTGGCACCGCTTCCAGAACAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTTCCACTGTGGTATCCCAGTACTTGGCACCGCTTCCAGAACAG  980

seq1  ACTTAATGGGCACTTAATAAATAATTTCAGACAGATGAATTACTTAACCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGGGCACTTAATAAATAATTTCAGACAGATGAATTACTTAACCC  1030

seq1  AAACCAAGACCTAGAGACAGTTGTTTTCAATTTCACATGCAACTTAGCAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGACCTAGAGACAGTTGTTTTCAATTTCACATGCAACTTAGCAA  1080

seq1  TGCATGCAATGCATACAGGGAGATGACTATTTAATTGGGCTATCAGCCTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAATGCATACAGGGAGATGACTATTTAATTGGGCTATCAGCCTG  1130

seq1  TCAGAATAGTAGAACATTCTAGGAAGCTGGCACCCCTCCAGACAGTTTTA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATAGTAGAACATTCTAGGAAGCTGGCACCCCTCCAGACAGTTTTA  1180

seq1  CCCTAAGGGAAAGTTTTCTTCCCTCCTCTTTCCAAAGGAATTC  1238
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGGAAAGTTTTCTTCCCTCCTCTTTCCAAAGGAATTC  1223

seq1: chr2_142775286_142775865
seq2: B6Ng01-095E09.g_71_650 (reverse)

seq1  GACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGT  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACAAATTTCTGGACAGATACCAGGTACCAATGTTGAATCAGGATCAAGT  50

seq1  TGACCTTCTAAACAGTCCCATATCCCCTAGAGAAATAGAAGCAGTTATAA  100
      |||||||||||||||||||||| | |||| ||||||||||||||||||||
seq2  TGACCTTCTAAACAGTCCCATAACTCCTAAAGAAATAGAAGCAGTTATAA  100

seq1  ATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAG  150

seq1  TTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTT  200

seq1  TCACAAGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCA  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCACAAGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGTAGCCA  250

seq1  CTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAAC  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTATTACTCTGATACCTAAACCACAGAATGATCCAACAAAGATAGAGAAC  300

seq1  TTCAGACCAATTTCTCTTATGAATATCGATGTAAAAATCCTCAATAAAAT  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAAT  350

seq1  TCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATACTGACC  400
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  TCTCGCTAACTGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACC  400

seq1  AAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCC  450

seq1  ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGAT  500

seq1  CATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCA  550

seq1  TGATAAAAGTTCTGGAAAGATCAGGAATTC  580
      ||||||||||||||||||||||||||||||
seq2  TGATAAAAGTTCTGGAAAGATCAGGAATTC  580