BAC Information

Click to search

BAC

Clone NameB6Ng01-095G15
Chromosome2 (Build37)10 (Build37)
Map Location 152,499,123 - 152,500,099118,080,841 - 118,081,186
singlet/doubletsingletsinglet
Overlap geneH13
Upstream geneBC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1
Downstream geneMcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095G15.bB6Ng01-095G15.g
ACCDH906365DH906366
length967559
definitionDH906365|Mus musculus domesticus DNA, BAC clone: B6Ng01-095G15, 5' end.DH906366|Mus musculus domesticus DNA, BAC clone: B6Ng01-095G15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(152,499,123 - 152,500,099)(118,080,841 - 118,081,186)
sequence
gaattccccagccactctatcactgtctacctggactgaggccccaggga
cacctgcagttacgccacactcactctttgccaccgttctgcctcctggc
tatgccctaaatgcatcttcttcctgtatgtgccctgtaccacacagctc
gcttcactaagtgcaccagtcattttgtgtctccttccagccgacaggca
cgcatgccctcgaaagcccgcacctggctgtagttgggtagctacgagct
ctatagcaggccatcttgtagaagccgaggatagagattcaggtagtgtt
tgactcaataaaccaatcttaagaaactttccctacaaattatgaaaata
ataattgcataaggatattgatttcagcgtttttgttttgttttgtggct
aaggactaaaaacatattgttgaggtctctaaattagtggctctcaagtt
tttagtggtcaccagaatcaccaagagggctttacagagcccaccttgaa
tctctggttctgaatctgccttttcttttttttttttttaaagatttgtt
tattattatatctaagtacactatagctgtctcttcagacacaccagaag
agggcatcagatcttattaaagatggttgtgagccaccatgtggttgctg
ggatttgaactcatgacctttggaagagcagtcagtgctcttacccactg
agccatctctccagccccctgaatctgcctttcctaagagttctgccctt
tcagaactggtgccctgaacaaactctgcgtatagtaagcctggcgctca
catctacagttccagctccaaggaagctgagcaggagagggttgagtttg
aggccacacagggctgcctactgataccagccagccagagctacatagcc
agatccagcctcataaaatcaatacagacccaccccactcccaaatcaga
tctactgatctactgac
acttccacactggcatttctcatacctttaattccagcatttgggaggca
aaggcaagcagacatctatgagttcgagaacaaagtgagttccaggacag
tcagggttacacagaaaaatttccttcttcttctcaaaggaagaagaaaa
aggagaaggaggagaaagagaaggaggaagaggaggaggaggaagaggag
gaaagaggaggaagatgtgatctttatgggcactacatcatgtgacctgg
atttcaccaatcagattacagtgctcaggactgtgtctttggggatcgcc
agcagcacagattgcagaatctaaaatctcagtctttaagtctccgcttc
cacatccttctgtacactcactcggcgtcccatctgctaccttcttgacg
ttatttcagactttaacaatgcaccagcatccttgattccaatctgctct
tctccatcatagtacctagccttccctccagctagacccgaggtttgcag
agactgacttccttcaaagaccttctaagtggtgtgcggtgtgttttgga
aaaagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152499123_152500099
seq2: B6Ng01-095G15.b_50_1016 (reverse)

seq1  GTCAGTAGATCAGTAGATCTGGATTTTTGGGGAGTGGGGTGGGTTCTGTA  50
      |||||||||||||||||||| |||||   |||||||||||||| ||||||
seq2  GTCAGTAGATCAGTAGATCT-GATTT---GGGAGTGGGGTGGG-TCTGTA  45

seq1  TTTGATTTTATGAGGCTGGATCTGGCTATGTAGCTCTGGCTGGCTTGGTA  100
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  -TTGATTTTATGAGGCTGGATCTGGCTATGTAGCTCTGGCTGGC-TGGTA  93

seq1  TTCAGTAGGCAGCCCTGTGTGGCCTCAAACTCAACCCTCTTCCTGCCTCA  150
       |||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  -TCAGTAGGCAGCCCTGTGTGGCCTCAAACTCAACCCTC-TCCTG-CTCA  140

seq1  GCTTCCTTGGAGCTGGAACTGTAGATGTGAGCGCCAGGCTTACTATACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTGGAGCTGGAACTGTAGATGTGAGCGCCAGGCTTACTATACGC  190

seq1  AGAGTTTGTTCAGGGCACCAGTTCTGAAAGGGCAGAACTCTTAGGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGTTCAGGGCACCAGTTCTGAAAGGGCAGAACTCTTAGGAAAGG  240

seq1  CAGATTCAGGGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACTGACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCAGGGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACTGACTGC  290

seq1  TCTTCCAAAGGTCATGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAAGGTCATGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA  340

seq1  ACCATCTTTAATAAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTAATAAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGACA  390

seq1  GCTATAGTGTACTTAGATATAATAATAAACAAATCTTTAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTGTACTTAGATATAATAATAAACAAATCTTTAAAAAAAAAAAA  440

seq1  AAGAAAAGGCAGATTCAGAACCAGAGATTCAAGGTGGGCTCTGTAAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGCAGATTCAGAACCAGAGATTCAAGGTGGGCTCTGTAAAGCC  490

seq1  CTCTTGGTGATTCTGGTGACCACTAAAAACTTGAGAGCCACTAATTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTGATTCTGGTGACCACTAAAAACTTGAGAGCCACTAATTTAGA  540

seq1  GACCTCAACAATATGTTTTTAGTCCTTAGCCACAAAACAAAACAAAAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAACAATATGTTTTTAGTCCTTAGCCACAAAACAAAACAAAAACG  590

seq1  CTGAAATCAATATCCTTATGCAATTATTATTTTCATAATTTGTAGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCAATATCCTTATGCAATTATTATTTTCATAATTTGTAGGGAAA  640

seq1  GTTTCTTAAGATTGGTTTATTGAGTCAAACACTACCTGAATCTCTATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAAGATTGGTTTATTGAGTCAAACACTACCTGAATCTCTATCCT  690

seq1  CGGCTTCTACAAGATGGCCTGCTATAGAGCTCGTAGCTACCCAACTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCTACAAGATGGCCTGCTATAGAGCTCGTAGCTACCCAACTACAG  740

seq1  CCAGGTGCGGGCTTTCGAGGGCATGCGTGCCTGTCGGCTGGAAGGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCGGGCTTTCGAGGGCATGCGTGCCTGTCGGCTGGAAGGAGACA  790

seq1  CAAAATGACTGGTGCACTTAGTGAAGCGAGCTGTGTGGTACAGGGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGACTGGTGCACTTAGTGAAGCGAGCTGTGTGGTACAGGGCACAT  840

seq1  ACAGGAAGAAGATGCATTTAGGGCATAGCCAGGAGGCAGAACGGTGGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGAAGATGCATTTAGGGCATAGCCAGGAGGCAGAACGGTGGCAA  890

seq1  AGAGTGAGTGTGGCGTAACTGCAGGTGTCCCTGGGGCCTCAGTCCAGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTGTGGCGTAACTGCAGGTGTCCCTGGGGCCTCAGTCCAGGTA  940

seq1  GACAGTGATAGAGTGGCTGGGGAATTC  977
      |||||||||||||||||||||||||||
seq2  GACAGTGATAGAGTGGCTGGGGAATTC  967

seq1: chr10_118080841_118081186
seq2: B6Ng01-095G15.g_285_629

seq1  ATGTGATCTTTAAGGGCACTACATCATGTGACCTGGATTTCACCAATCAG  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCTTTATGGGCACTACATCATGTGACCTGGATTTCACCAATCAG  50

seq1  ATTACAGTGCTCAGGACTGTGTCTTTGGGGATCGCCAGCAGCACAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGCTCAGGACTGTGTCTTTGGGGATCGCCAGCAGCACAGATTG  100

seq1  CAGAATCTAAAATCTCAGTCTTTAAGTCTCCGCTTCCACATCCTTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTAAAATCTCAGTCTTTAAGTCTCCGCTTCCACATCCTTCTGTA  150

seq1  CACTCACTCGGCGTCCCATCTGCTACCTTCTTGACGTTATTTCAGACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTCGGCGTCCCATCTGCTACCTTCTTGACGTTATTTCAGACTTT  200

seq1  AACAATGCACCAGCATCCTTGATTCCAAATCTGCTCTTCTCCATCATAGT  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACAATGCACCAGCATCCTTGATTCC-AATCTGCTCTTCTCCATCATAGT  249

seq1  ACCTAGCCTTCCCTCCAGCTAGA-CCGAGGTTTGCAGAGACTGACTTCCT  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCTAGCCTTCCCTCCAGCTAGACCCGAGGTTTGCAGAGACTGACTTCCT  299

seq1  TCAAAGACCTTCTAAGTGGTGTGCGGTGTGTTTTGTAAAAAAGATAA  346
      |||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TCAAAGACCTTCTAAGTGGTGTGCGGTGTGTTTTG-GAAAAAGATAA  345