BAC Information

Click to search

BAC

Clone NameB6Ng01-096D15
Chromosome10 (Build37)
Map Location 78,219,849 - 78,379,617
singlet/doubletdoublet
Overlap geneSlc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265
Upstream geneLOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105
Downstream geneOlfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096D15.bB6Ng01-096D15.g
ACCDH906945DH906946
length1,273725
definitionDH906945|Mus musculus domesticus DNA, BAC clone: B6Ng01-096D15, 5' end.DH906946|Mus musculus domesticus DNA, BAC clone: B6Ng01-096D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,378,365 - 78,379,617)(78,219,849 - 78,220,573)
sequence
gaattcttcttgtgctgttgcctgattccatcagtcacatgtgtctatga
gacaagataaagacaagatagcatgactattctcacattgatgtagatta
tatgctaaattttatgttttcagcaaattaacttctgaattatttccaag
aaattgttcttcttatggagtctctgatgttaatcttgatagacattcct
ttcactctctgaaccttttattaaaagtcatgtattctacagttttaatg
agaaattattatgaatacataatgttactgctaaatatgattcaggcagt
gtttagggaatttatagaggttgataaaaacaaagagaacttagtgtata
tgaatgaaaagattataggaaaataaagaaatcatgtttactaccttttg
ggatgatagcatgacatacatttgtctatgtacacattcagcaaaattta
cccttttaataaatgtgaacatacacagagagaggaagagagagaaatag
aataaaaacaaaactatttaaaaacaattaccctataacatgacaaggag
tggtgatgcagtgaagagtatgaaagcaagtataactgaaaagaaagata
gaagctgctgtaatgtgtctgccacgcctgtgcatgtatatatctgtgat
ttacacattttgaggaaatcacacacaggactttctgcatagtaaccagg
tgacattctggccagatcattctgtgtagtgggattctctgtgcctcaca
gggtgcttagaagcaacccagcctctaatgaagactccctgtatgagaga
tgagcagtgctagacactgaagggtagaattgcttcacattgagaagtga
agtttaacctaaaagcaaaattgttattgcagcatgtgtgtaatttaaaa
ttcatgaaaaagaacacaaataccttcccaatggatccacgggcacaatt
gtacagttttttacatggtttgaaacagctatatgtgctatgaacaatca
ttcttttgatgtctgtgcctgttatttagtgaaaaggataagctgagaaa
aaagaaaattaaaattgggagtagaacatataaatgcaataatgactagc
ctagaatacttactgggagttattccataagcagtgtatgagcaagtatg
tacctccttatattaatggagagacttttttcagagatacatagaaacct
tctggagcgaatggcaggcggatatgagtttctctccttgcagcacattt
agagatatggagagagttttttt
gaattcagaaggcagattgctgcctgctgaatgtagactagaattgtgtc
caaatatcaatctacctgaaagatgctgtcttagctaaggtaaaacacct
tgatagacagcctcttgtggagggaagggtttatctggcttacgtatcct
gaatcatagttcatggagggaagccaacatagggcaggcacctggaggca
ggagatggtatagaggccatgaaggatgttgctcactggctttttcttta
tgccttgctcaacagtgccttcttattgaacccagtaccaccagcccaag
gatggcaccatccacaatgggtaggactctccagcaatcactaatttaaa
aaaaatgacctacagccggatcttatgggggagttttctcagttaaggtt
atctcccttcagatgactctagctagcctgtgtgaagagaacataaaatt
aactataacagataccgacagctctgctgggtcagtcctatgagtgaggg
tattgtttttcatgtggctgttgcagctcattacgatggtagacgtgggt
acactctgtcttatacttgtagccgccagcggctatgggttattgggttc
ctaaaaggaaagttggggttagataggaaaggaggtgagagaaataacaa
accaagacaaagttctctgatcaaggctcaatgtttacttatgagtctga
acttataaagggtgggggttatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_78378365_78379617
seq2: B6Ng01-096D15.b_46_1318 (reverse)

seq1  AAAAAAA----CTCCATA-ATCTTAATGTGCT--AAGGGGAGAAACTAAT  43
      |||||||    |||||||  ||| ||||||||  |||| |||||||| ||
seq2  AAAAAAACTCTCTCCATATCTCTAAATGTGCTGCAAGGAGAGAAACTCAT  50

seq1  -TACCACTGCCCTTTTCTGCTTCAGA--GTTTCTTAGTATCTCTG-AAAA  89
       | |  ||||| ||    ||| ||||  ||||||  ||||||||| ||||
seq2  ATCCGCCTGCCATT---CGCTCCAGAAGGTTTCTATGTATCTCTGAAAAA  97

seq1  TGTCTCTCTAT--ATATTATGA-GTACATACTTGCTCATACACTGCTTAT  136
       ||||||| ||  |||| | || |||||||||||||||||||||||||||
seq2  AGTCTCTCCATTAATATAAGGAGGTACATACTTGCTCATACACTGCTTAT  147

seq1  GAAAT-ACT-CCAGT-AGTATTCTAGGCTAGTCATTA-TGCA-TTATATG  181
      | ||| ||| ||||| ||||||||||||||||||||| |||| |||||||
seq2  GGAATAACTCCCAGTAAGTATTCTAGGCTAGTCATTATTGCATTTATATG  197

seq1  -TCTACT-CCAATTTT-ATTTTC-TATTTCTCAGCTTAT-CTTTTCACTA  226
       |||||| |||||||| |||||| | ||||||||||||| ||||||||||
seq2  TTCTACTCCCAATTTTAATTTTCTTTTTTCTCAGCTTATCCTTTTCACTA  247

seq1  AATAACAGGCACAGACATC-AAAGAATGATTGTTCATAGCACATATTAGC  275
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  AATAACAGGCACAGACATCAAAAGAATGATTGTTCATAGCACATA-TAGC  296

seq1  TGTTTCAAACCATGTAAAAAACTGTACAATTGTGCCCGTGGATCCATTGG  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAACCATGTAAAAAACTGTACAATTGTGCCCGTGGATCCATTGG  346

seq1  GAAGGTATTTTGTGTTCTTTTTCATGAATTTTAAATTACACACATGCTGC  375
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTA-TTTGTGTTCTTTTTCATGAATTTTAAATTACACACATGCTGC  395

seq1  AATAACAATTTTGCTTTTAGGTTAAACTTCACTTCTCAATGTGAAGCAAT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATTTTGCTTTTAGGTTAAACTTCACTTCTCAATGTGAAGCAAT  445

seq1  TCTACCCTTCAGTGTCTAGCACTGCTCATCTCTCATACAGGGAGTCTTCA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTTCAGTGTCTAGCACTGCTCATCTCTCATACAGGGAGTCTTCA  495

seq1  TTAGAGGCTGGGTTGCTTCTAAGCACCCTGTGAGGCACAGAGAATCCCAC  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGCTGGGTTGCTTCTAAGCACCCTGTGAGGCACAGAGAATCCCAC  545

seq1  TACACAGAATGATCTGGCCAGAATGTCACCTGGTTACTATGCAGAAAGTC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAATGATCTGGCCAGAATGTCACCTGGTTACTATGCAGAAAGTC  595

seq1  CTGTGTGTGATTTCCTCAAAATGTGTAAATCACAGATATATACATGCACA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGATTTCCTCAAAATGTGTAAATCACAGATATATACATGCACA  645

seq1  GGCGTGGCAGACACATTACAGCAGCTTCTATCTTTCTTTTCAGTTATACT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGCAGACACATTACAGCAGCTTCTATCTTTCTTTTCAGTTATACT  695

seq1  TGCTTTCATACTCTTCACTGCATCACCACTCCTTGTCATGTTATAGGGTA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCATACTCTTCACTGCATCACCACTCCTTGTCATGTTATAGGGTA  745

seq1  ATTGTTTTTAAATAGTTTTGTTTTTATTCTATTTCTCTCTCTTCCTCTCT  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTAAATAGTTTTGTTTTTATTCTATTTCTCTCTCTTCCTCTCT  795

seq1  CTGTGTATGTTCACATTTATTAAAAGGGTAAATTTTGCTGAATGTGTACA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGTTCACATTTATTAAAAGGGTAAATTTTGCTGAATGTGTACA  845

seq1  TAGACAAATGTATGTCATGCTATCATCCCAAAAGGTAGTAAACATGATTT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAATGTATGTCATGCTATCATCCCAAAAGGTAGTAAACATGATTT  895

seq1  CTTTATTTTCCTATAATCTTTTCATTCATATACACTAAGTTCTCTTTGTT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTCCTATAATCTTTTCATTCATATACACTAAGTTCTCTTTGTT  945

seq1  TTTATCAACCTCTATAAATTCCCTAAACACTGCCTGAATCATATTTAGCA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAACCTCTATAAATTCCCTAAACACTGCCTGAATCATATTTAGCA  995

seq1  GTAACATTATGTATTCATAATAATTTCTCATTAAAACTGTAGAATACATG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTATGTATTCATAATAATTTCTCATTAAAACTGTAGAATACATG  1045

seq1  ACTTTTAATAAAAGGTTCAGAGAGTGAAAGGAATGTCTATCAAGATTAAC  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATAAAAGGTTCAGAGAGTGAAAGGAATGTCTATCAAGATTAAC  1095

seq1  ATCAGAGACTCCATAAGAAGAACAATTTCTTGGAAATAATTCAGAAGTTA  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGACTCCATAAGAAGAACAATTTCTTGGAAATAATTCAGAAGTTA  1145

seq1  ATTTGCTGAAAACATAAAATTTAGCATATAATCTACATCAATGTGAGAAT  1175
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGAAAACATAAAATTTAGCATATAATCTACATCAATGTGAGAAT  1195

seq1  AGTCATGCTATCTTGTCTTTATCTTGTCTCATAGACACATGTGACTGATG  1225
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCTATCTTGTCTTTATCTTGTCTCATAGACACATGTGACTGATG  1245

seq1  GAATCAGGCAACAGCACAAGAAGAATTC  1253
      ||||||||||||||||||||||||||||
seq2  GAATCAGGCAACAGCACAAGAAGAATTC  1273

seq1: chr10_78219849_78220573
seq2: B6Ng01-096D15.g_67_791

seq1  GAATTCAGAAGGCAGATTGCTGCCTGCTGAATGTAGACTAGAATTGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGGCAGATTGCTGCCTGCTGAATGTAGACTAGAATTGTGTC  50

seq1  CAAATATCAATCTACCTGAAAGATGCTGTCTTAGCTAAGGTAAAACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCAATCTACCTGAAAGATGCTGTCTTAGCTAAGGTAAAACACCT  100

seq1  TGATAGACAGCCTCTTGTGGAGGGAAGGGTTTATCTGGCTTACGTATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACAGCCTCTTGTGGAGGGAAGGGTTTATCTGGCTTACGTATCCT  150

seq1  GAATCATAGTTCATGGAGGGAAGCCAACATAGGGCAGGCACCTGGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATAGTTCATGGAGGGAAGCCAACATAGGGCAGGCACCTGGAGGCA  200

seq1  GGAGATGGTATAGAGGCCATGAAGGATGTTGCTCACTGGCTTTTTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTATAGAGGCCATGAAGGATGTTGCTCACTGGCTTTTTCTTTA  250

seq1  TGCCTTGCTCAACAGTGCCTTCTTATTGAACCCAGTACCACCAGCCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCTCAACAGTGCCTTCTTATTGAACCCAGTACCACCAGCCCAAG  300

seq1  GATGGCACCATCCACAATGGGTAGGACTCTCCAGCAATCACTAATTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACCATCCACAATGGGTAGGACTCTCCAGCAATCACTAATTTAAA  350

seq1  AAAAATGACCTACAGCCGGATCTTATGGGGGAGTTTTCTCAGTTAAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACCTACAGCCGGATCTTATGGGGGAGTTTTCTCAGTTAAGGTT  400

seq1  ATCTCCCTTCAGATGACTCTAGCTAGCCTGTGTGAAGAGAACATAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTTCAGATGACTCTAGCTAGCCTGTGTGAAGAGAACATAAAATT  450

seq1  AACTATAACAGATACCGACAGCTCTGCTGGGTCAGTCCTATGAGTGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAACAGATACCGACAGCTCTGCTGGGTCAGTCCTATGAGTGAGGG  500

seq1  TATTGTTTTTCATGTGGCTGTTGCAGCTCATTACGATGGTAGACGTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTTCATGTGGCTGTTGCAGCTCATTACGATGGTAGACGTGGGT  550

seq1  ACACTCTGTCTTATACTTGTAGCCGCCAGCGGCTATGGGTTATTGGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGTCTTATACTTGTAGCCGCCAGCGGCTATGGGTTATTGGGTTC  600

seq1  CTAAAAGGAAAGTTGGGGTTAGATAGGAAAGGAGGTGAGAGAAATAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGGAAAGTTGGGGTTAGATAGGAAAGGAGGTGAGAGAAATAACAA  650

seq1  ACCAAGACAAAGTTCTCTGATCAAGGCTCAATGTTTACTTATGAGTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACAAAGTTCTCTGATCAAGGCTCAATGTTTACTTATGAGTCTGA  700

seq1  ACTTATAAAGGGTGGGGGTTATGGG  725
      |||||||||||||||||||||||||
seq2  ACTTATAAAGGGTGGGGGTTATGGG  725