BAC Information

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BAC

Clone NameB6Ng01-096I12
Chromosome10 (Build37)
Map Location 83,458,111 - 83,625,636
singlet/doubletdoublet
Overlap geneC230099D08Rik
Upstream geneChst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225
Downstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096I12.bB6Ng01-096I12.g
ACCDH907157DH907158
length1,044580
definitionDH907157|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I12, 5' end.DH907158|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,624,593 - 83,625,636)(83,458,111 - 83,458,689)
sequence
gaattcacatgagacttgacttcctttttccttctcagactgggccatag
ccccagagctctgtgaccagcacagctagtaagcagactcgttttttctc
ttggcccagcaaatggttttcagtgtctctgttctaggtagctgtgcaaa
gacaatagaagccccattagggtagacagattccttggttgcaaacacag
atctccttggggcagcaccagccacctctcaggaatgcaggccctctggt
ccatgcctcagcctagcacattgaacctcaatttcttttaattaaactga
agaatttgttgtaatttaactaatcgccctgggtgtgctagcaattaact
gtgaaccaaatataatgggccagtaagtgtcctgtggtctgaagagtgct
agatccctacaaatggcttcatacttgccagctctcctctaattgggttc
ctggtactgtccccagtatgtcacccctaaagtcaaagacatgtcactct
ctgaggttaggttatatcctttgagcatctgttcttcttttcccggagtt
tccaggagaatcatttcaagcatgggttcttgccactgttattcctgatg
gatgggatgtggggagaaagccgccacctcattaagggcacaggttaact
ggaatggatttcccatcaccccgagggagctggtagaccctgtgtgcaaa
cattagcttgacaggggagaaatttccccttcttctgtggagggcagcag
acagagtaaatattaacagacgggaaactttactttctgaagaggccctg
ggttgctaatggagcagaagaacgcttttgagccctttcctccttttcaa
ccaaggaaaagccattctcctttgaacaccatgttttgatgttgggcctt
gtaggacaaagggacttcttactggaccagacagcaaagttcttgcagtc
ttgactctctcctccatggtattctgctcaagaggccaggtgagcagtca
tctgtttacatggctctgctataataaggccctgccagctactc
gaattcttttgttctgaggagaataaacgagtttcagttaaaataagatc
cagattgcccgagaatgtccaagtctaaggacccgccagtgcaaaacaac
ttctagtgtttgaatgagaacttttcccaaggctggttttggtgatggag
acactgccagacacagcatcattaactaaagatcatggaaaatggctctg
tgttttattgccgtgtgtgttaaatggcagagagcaagaaattggaaagc
tccaaacccagctatgctcagggaatggaaaacaaactgctctagccatt
gcattctgggaaggatactcagaaagagagacgcaacacatatttggacc
agactcagcaaaagctgggtaccctcatgctagcgaagacctctggccac
caagcaccagtctgtaccttctccctcagatatgcctgaagctgtgtggg
actctaaccttggaaaaagtcgggggcagggggtccatgggagtgtttgc
ttgggtcctttgggtggccattcttttctgtgtgggcttttgcagaggtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_83624593_83625636
seq2: B6Ng01-096I12.b_43_1086 (reverse)

seq1  GTGTAGCTGCCAGGGCC-TCTTATAGCAGAGCATTGTAAACAGATGGACT  49
      | ||||||| ||||||| | ||||||||||||  ||||||||||| ||||
seq2  GAGTAGCTGGCAGGGCCTTATTATAGCAGAGCCATGTAAACAGAT-GACT  49

seq1  GGCTCACCTTGGGCCTCCTGGAGCAGAATACCATGGAGGAGTAGAGTCAA  99
       ||||||||  ||||| || ||||||||||||||||||||| ||||||||
seq2  -GCTCACCT--GGCCT-CTTGAGCAGAATACCATGGAGGAG-AGAGTCAA  94

seq1  GACTGCAAGAACTTTGCTGTCTGGTCCAGGTAGAAGTCCC-TTGTCCTAC  148
      |||||||||||||||||||||||||||||  ||||||||| |||||||||
seq2  GACTGCAAGAACTTTGCTGTCTGGTCCAGTAAGAAGTCCCTTTGTCCTAC  144

seq1  AAGGCCCAACATC-AAACATGGTGTTC-AAGGAGAATGGCTTTCCCTTGG  196
      ||||||||||||| ||||||||||||| ||||||||||||||| ||||||
seq2  AAGGCCCAACATCAAAACATGGTGTTCAAAGGAGAATGGCTTTTCCTTGG  194

seq1  TTGATAAGGAGG-AAGGGCTC-AAAGCGTTCTTCTGCTCCATTAGCAACC  244
      |||| ||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TTGAAAAGGAGGAAAGGGCTCAAAAGCGTTCTTCTGCTCCATTAGCAACC  244

seq1  CAGGGCCTCTTCAGAAAGTAAAGTTTCCCGTCTGTTAATATTTACTCTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTCTTCAGAAAGTAAAGTTTCCCGTCTGTTAATATTTACTCTGT  294

seq1  CTGCTGCCCTCCACAGAAGAAGGGGAAATTTCTCCCCTGTCAAGCTAATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCCTCCACAGAAGAAGGGGAAATTTCTCCCCTGTCAAGCTAATG  344

seq1  TTTGCACACAGGGTCTACCAGCTCCCTCGGGGTGATGGGAAATCCATTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACACAGGGTCTACCAGCTCCCTCGGGGTGATGGGAAATCCATTCC  394

seq1  AGTTAACCTGTGCCCTTAATGAGGTGGCGGCTTTCTCCCCACATCCCATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACCTGTGCCCTTAATGAGGTGGCGGCTTTCTCCCCACATCCCATC  444

seq1  CATCAGGAATAACAGTGGCAAGAACCCATGCTTGAAATGATTCTCCTGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGAATAACAGTGGCAAGAACCCATGCTTGAAATGATTCTCCTGGA  494

seq1  AACTCCGGGAAAAGAAGAACAGATGCTCAAAGGATATAACCTAACCTCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCGGGAAAAGAAGAACAGATGCTCAAAGGATATAACCTAACCTCAG  544

seq1  AGAGTGACATGTCTTTGACTTTAGGGGTGACATACTGGGGACAGTACCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGACATGTCTTTGACTTTAGGGGTGACATACTGGGGACAGTACCAG  594

seq1  GAACCCAATTAGAGGAGAGCTGGCAAGTATGAAGCCATTTGTAGGGATCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAATTAGAGGAGAGCTGGCAAGTATGAAGCCATTTGTAGGGATCT  644

seq1  AGCACTCTTCAGACCACAGGACACTTACTGGCCCATTATATTTGGTTCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTTCAGACCACAGGACACTTACTGGCCCATTATATTTGGTTCAC  694

seq1  AGTTAATTGCTAGCACACCCAGGGCGATTAGTTAAATTACAACAAATTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTGCTAGCACACCCAGGGCGATTAGTTAAATTACAACAAATTCT  744

seq1  TCAGTTTAATTAAAAGAAATTGAGGTTCAATGTGCTAGGCTGAGGCATGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTAATTAAAAGAAATTGAGGTTCAATGTGCTAGGCTGAGGCATGG  794

seq1  ACCAGAGGGCCTGCATTCCTGAGAGGTGGCTGGTGCTGCCCCAAGGAGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGGCCTGCATTCCTGAGAGGTGGCTGGTGCTGCCCCAAGGAGAT  844

seq1  CTGTGTTTGCAACCAAGGAATCTGTCTACCCTAATGGGGCTTCTATTGTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGCAACCAAGGAATCTGTCTACCCTAATGGGGCTTCTATTGTC  894

seq1  TTTGCACAGCTACCTAGAACAGAGACACTGAAAACCATTTGCTGGGCCAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAGCTACCTAGAACAGAGACACTGAAAACCATTTGCTGGGCCAA  944

seq1  GAGAAAAAACGAGTCTGCTTACTAGCTGTGCTGGTCACAGAGCTCTGGGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAACGAGTCTGCTTACTAGCTGTGCTGGTCACAGAGCTCTGGGG  994

seq1  CTATGGCCCAGTCTGAGAAGGAAAAAGGAAGTCAAGTCTCATGTGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCCCAGTCTGAGAAGGAAAAAGGAAGTCAAGTCTCATGTGAATTC  1044

seq1: chr10_83458111_83458689
seq2: B6Ng01-096I12.g_68_647

seq1  GAATTCTTTTGTTCTGAGGAGAATAAACGAGTTTCAGTTAAAATAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTCTGAGGAGAATAAACGAGTTTCAGTTAAAATAAGATC  50

seq1  CAGATTGCCCGAGAATGTCCAAGTCTAAGGACCCGCCAGTGCAAAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGCCCGAGAATGTCCAAGTCTAAGGACCCGCCAGTGCAAAACAAC  100

seq1  TTCTAGTGTTTGAATGAGAACTTTTCCCAAGGCTGGTTTTGGTGATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGTTTGAATGAGAACTTTTCCCAAGGCTGGTTTTGGTGATGGAG  150

seq1  ACACTGCCAGACACAGCATCATTAACTAAAGATCATGGAAAATGGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCAGACACAGCATCATTAACTAAAGATCATGGAAAATGGCTCTG  200

seq1  TGTTTTATTGCCGTGTGTGTTAAATGGCAGAGAGCAAGAAATTGGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTGCCGTGTGTGTTAAATGGCAGAGAGCAAGAAATTGGAAAGC  250

seq1  TCCAAACCCAGCTATGCTCAGGGAATGGAAAACAAACTGCTCTAGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCCAGCTATGCTCAGGGAATGGAAAACAAACTGCTCTAGCCATT  300

seq1  GCATTCTGGGAAGGATACTCAGAAAGAGAGACGCAACACATATTTGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGGGAAGGATACTCAGAAAGAGAGACGCAACACATATTTGGACC  350

seq1  AGACTCAGCAAAAGCTGGGTACCCTCATGCTAGCGAAGACCTCTGGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGCAAAAGCTGGGTACCCTCATGCTAGCGAAGACCTCTGGCCAC  400

seq1  CAAGCACCAGTCTGTACCTTCTCCCTCAGATATGCCTGAAGCTGTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCAGTCTGTACCTTCTCCCTCAGATATGCCTGAAGCTGTGTGGG  450

seq1  ACTCTAACCTTGGAAAAAGTCGGGGGCAGGGGGTCCATGGGAGTGTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACCTTGGAAAAAGTCGGGGGCAGGGGGTCCATGGGAGTGTTTGC  500

seq1  TTGGGTCCTTTGGGTGGCCATTCTTTTCTGTGTGGGC-TTTGCAGAGGTG  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGGTCCTTTGGGTGGCCATTCTTTTCTGTGTGGGCTTTTGCAGAGGTG  550

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTA  579
      ||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTA  580