BAC Information

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BAC

Clone NameB6Ng01-096L10
Chromosome16 (Build37)10 (Build37)
Map Location 68,453,787 - 68,454,52538,613,406 - 38,613,921
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCadm2
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L10.bB6Ng01-096L10.g
ACCDH907284DH907285
length7401,000
definitionDH907284|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L10, 5' end.DH907285|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,453,787 - 68,454,525)(38,613,406 - 38,613,921)
sequence
gaattcattttagaactaaaaatcatagtatctgattcacctcacaaaat
ctactctctaagaggcaggcttttggaatccatcacacagcctacgagaa
ggtaacaaccagttccctctgtctcatgagtatttttagatctaaaatat
cctggtggaaagtaaagataaaaaaggcagcaaggaatgtcagcacaatc
aaaatgaaagacaatctgacttctcatagtcatgcatgaggcgcttccga
tgcgggaatcacagcctgagcttctgcatattgtccaaacttatacaata
accatgtgtaaataagggtaaagaccatctaatttatagaccttgtatta
ggctcctgtctcaccatggactgagagttcttgggccacattttggtcaa
cctgttatccttctgtaaagtataatctatgttttcagtatcattttttt
tcttaaactgagaaatatgaactagtattcagcgggtttgtttgttttga
tttgtttgaaattcactgttgaagacacaaagttcctgaacactgtttca
attacaaaagtataacaattagagaacaaagattttttaaaaagtaccta
ttgatgtgttagaatagcagatctgattgcatctgaacacaacacacctg
gcctgagcagtaccatgttaagaggtctattgggagaaagcagggcaagg
aagacagcagaaagtgaagcaagaagggggggggggggag
gaattctctgtttagatttgtattccatatttaaattggattggttgatt
gtagatgtctagtttctttttttcttttttctgttttggatattagccct
gaatttgatatggaattggtgaaaatctttttctgttgtgtaggccatag
ttttgtcttattcacaatgttcttttccttaccaaaacatttctttcttt
ccttctttctttctttctttctctctctctctttctctctctctctctct
cttttctattggatattctctttacatttcaaatgttatcccctttcctg
ttactccccccccaaaagcactatttcatctccctttccttgcttaaatg
aaatatatatatttcttttatgccaatatcatgcagtttttattgctata
gccctagtacagcttgagataaggaatggtgtttccccagttcttttgtt
gttcaggattgtttaagctatactatttattttgcttttcattggaaatt
taatatattgtcttttcaagttttgcaaagaattgtgttgacattttgat
gggattgcttttaatctgtatattatctttggtaggatggtcatttttat
tatgataattctactgatcaacgagtatagatttctttttaatcttctga
tatcttctttaatttctttctttaaagtcttaagtttcagtcataccagc
ccttcacttgcttggttacaattacctcatgatataatgagacatattac
ttctttgtggctattgtaatgaaggtatttacctaatttaatttttagta
agaggattaatgtttttggcttttgtttttgtttgtttgtttaccttgta
tcaagctactttgttaaagggtgtttttcagctaaagcacttccctgaag
aaacttactacagtgacatatactatgcaaataacaattcttgactgctt
tcattccattcatatccttttatctcttaagttgttttattactctagaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_68453787_68454525
seq2: B6Ng01-096L10.b_46_785 (reverse)

seq1  CT-CCCCCCCCCCCCTTCTTGCTTCACTTTCTGCTGTCTTCCTTGCCCTG  49
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCCCCCCCCTTCTTGCTTCACTTTCTGCTGTCTTCCTTGCCCTG  50

seq1  CTTTCTCCCAATAGACCTCTTAACATGGTACTGCTCAGGCCAGGTGTGTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCCAATAGACCTCTTAACATGGTACTGCTCAGGCCAGGTGTGTT  100

seq1  GTGTTCAGATGCAATCAGATCTGCTATTCTAACACATCAATAGGTACTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGATGCAATCAGATCTGCTATTCTAACACATCAATAGGTACTTT  150

seq1  TTAAAAAATCTTTGTTCTCTAATTGTTATACTTTTGTAATTGAAACAGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATCTTTGTTCTCTAATTGTTATACTTTTGTAATTGAAACAGTG  200

seq1  TTCAGGAACTTTGTGTCTTCAACAGTGAATTTCAAACAAATCAAAACAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAACTTTGTGTCTTCAACAGTGAATTTCAAACAAATCAAAACAAA  250

seq1  CAAACCCGCTGAATACTAGTTCATATTTCTCAGTTTAAGAAAAAAAATGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCGCTGAATACTAGTTCATATTTCTCAGTTTAAGAAAAAAAATGA  300

seq1  TACTGAAAACATAGATTATACTTTACAGAAGGATAACAGGTTGACCAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAACATAGATTATACTTTACAGAAGGATAACAGGTTGACCAAAA  350

seq1  TGTGGCCCAAGAACTCTCAGTCCATGGTGAGACAGGAGCCTAATACAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCAAGAACTCTCAGTCCATGGTGAGACAGGAGCCTAATACAAGG  400

seq1  TCTATAAATTAGATGGTCTTTACCCTTATTTACACATGGTTATTGTATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAATTAGATGGTCTTTACCCTTATTTACACATGGTTATTGTATAA  450

seq1  GTTTGGACAATATGCAGAAGCTCAGGCTGTGATTCCCGCATCGGAAGCGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGACAATATGCAGAAGCTCAGGCTGTGATTCCCGCATCGGAAGCGC  500

seq1  CTCATGCATGACTATGAGAAGTCAGATTGTCTTTCATTTTGATTGTGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCATGACTATGAGAAGTCAGATTGTCTTTCATTTTGATTGTGCTG  550

seq1  ACATTCCTTGCTGCCTTTTTTATCTTTACTTTCCACCAGGATATTTTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTTGCTGCCTTTTTTATCTTTACTTTCCACCAGGATATTTTAGA  600

seq1  TCTAAAAATACTCATGAGACAGAGGGAACTGGTTGTTACCTTCTCGTAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATACTCATGAGACAGAGGGAACTGGTTGTTACCTTCTCGTAGG  650

seq1  CTGTGTGATGGATTCCAAAAGCCTGCCTCTTAGAGAGTAGATTTTGTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGATGGATTCCAAAAGCCTGCCTCTTAGAGAGTAGATTTTGTGAG  700

seq1  GTGAATCAGATACTATGATTTTTAGTTCTAAAATGAATTC  739
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCAGATACTATGATTTTTAGTTCTAAAATGAATTC  740

seq1: chr10_38613406_38613921
seq2: B6Ng01-096L10.g_131_322 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      | ||||||||||||||||||||||||||||||||| ||| ||| ||| ||
seq2  AAAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAAGAAAGAAAGAAAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGACTCCCTTCTTCAATGTCCTTGTATG  100
      |  || ||| |||                       |||||  | ||| |
seq2  AAGGAAAGAAAGA-----------------------AATGTTTTGGTAAG  77

seq1  GTCTCCAGCAGAA-GGTGTAGCCCAGATTAAAGGTGTGTGCCACCACACC  149
      |     |  ||||   |||     |||  |||  | || |||  |||| |
seq2  G-----AAAAGAACATTGTGAATAAGA-CAAAACTATG-GCCTACACAAC  120

seq1  TTTAATCCCAGATGACCTTAACTCAGAGATCTCCCAGTCTAATCTTCTGG  199
         ||    ||||    ||   |||   || |||   || ||  ||| ||
seq2  AGAAA---AAGAT----TT---TCACCAAT-TCCATATCAAA--TTCAGG  157

seq1  AATCCATATGCACTATGCCTCAAGATCTCCATACCAAGATCCAGGTCAGA  249
        |  |||| ||  |       |||       |  ||||   |    |||
seq2  GCT-AATATCCAAAA------CAGA-------AAAAAGA---AAAAAAGA  190

seq1  AACTTCTATCTCCCAGCCTCCAGATTAGGGTCACTGGTGAGCCTTCCAAT  299
      ||                                                
seq2  AA------------------------------------------------  192

seq1  TCCGGATTGTAGTTCATTCCAGATATAGTCAAGTTGACAACCAAGAATAG  349
                                                        
seq2  --------------------------------------------------  192

seq1  CCATTACAATGCCGCAGTACAAGGGAATGAATGCCAGGGCCGGGAAGCGG  399
                                                        
seq2  --------------------------------------------------  192

seq1  GAGTGGGTGAGTTGAGGCGCAGGGCGGGGGGAGGGTATCATGGACTTTTG  449
                                                        
seq2  --------------------------------------------------  192

seq1  GGATAGCATTTGAAATATAAATAAAGAAAATATGTTAAAAATGTTTTGGA  499
                                                        
seq2  --------------------------------------------------  192

seq1  AAAAAGAAAAAAAGAAA  516
                       
seq2  -----------------  192