BAC Information

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BAC

Clone NameB6Ng01-096P08
Chromosome10 (Build37)
Map Location 48,473,605 - 48,593,897
singlet/doubletdoublet
Overlap geneLOC100041689
Upstream geneLOC100041663, LOC100042398, LOC546562
Downstream geneGrik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P08.bB6Ng01-096P08.g
ACCDH907458DH907459
length1,0461,189
definitionDH907458|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P08, 5' end.DH907459|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,473,605 - 48,474,466)(48,592,701 - 48,593,897)
sequence
gaattctccaccctgccttaaccacttgataacatgtgaaaaggaacaaa
aaggctcctaacactggagaaagttcaaggccagacataccttgtaaagc
tgttccccgctttacttctgatagactgtcctgaatttcgttagaaagtt
caaggccagacataccttgtaaagctgttccccactttacttctgataga
ctgtcttgaatttcattagaaagttcaaggctagacataccttataaagc
tgtaacgtgaccgtgactcccagttctggttccggaatgagggatcttcc
ttgtgccagtctgatggtagttcctgggtgtcagcaccacttattctgag
cttttgtgtccgccggcaagaaagacgcaacaaaccggaatcttctgcgg
caaaagctttattgcttacatcttcaggagcaagagagagaatggcaaaa
ccccgtcccttttaaggagaattatccttcgcctagacgtgtcgctccct
gattggctgcagcccattggcctagttgtcatcatggggaaggcagagca
catggagtggagaactacccttggcacatgcgcagattatttgtttacca
tttagaacacaggatgtcagcaccatcttgtaaaggcgaatgtgagggtg
gctccccacactttgtcctcttagatttaatttgacagtgtcctttgttt
ctgttatatgaaatcattggggcattgttgtttttttagcacttctttca
aagtctagtaggattctgcaataaaaacatgaggcccttggctttagggg
ggcagggtgtttgttatgggtttatttaaatcattgacatgatcttgatt
taacttagataagtgatatatgtcaatttcatttagattttccaatttta
tgtagtacaggttgctgacataagacctaatgatactttgaattccgtca
atgtaacattttgtttatttctacctctctcttttagtgattgtgactat
gtgtttgtctagtgtatgttttctccaaagaaccttgtattttttc
gaattcaaaggctccttgaaatagacttgtgcaaaagcctattatctggt
tcatatatatccacactctgaagtagatcatggtggtaggctgtttgtag
aatatctaaataacctcagataatctctatgcttttcctgtcttattata
cacaatcatccattgtagattaaccctttaggaaaaggctggtgatgtgc
aatatttttaataattattttgttgacttttatcttgaatccatttctat
tatttcaatagaaatgatatatttcttttttcaacgttgaatctaaaagt
tagtttctatcttggaactgacggaaacatttatggcattttactgggat
gacttggtcctagccacttttttccttttatgcttatgatattctttcta
atatgcattaggggtagaacactatataaatcacatctggaaattcattc
atgctaatttcatttggtcttttcaatttgtcatttagtaagttagctgt
aggcttctgagaatgaggataaaatactggtatgtagtttttgtcatatc
aggacattgccttctaccttgacattaagaaagtagttgagtgactactt
cacttgacattataaaagaaatgaatggcatttttaactaattttgattg
aatatactccaacgcatcagtgacgttctctgagtgacatgtcctctttg
aacttatagagaagacaccacttcctatatctttgggatcataaaaatgg
ttatgtagcatcgtcacttacttatattttatcttgtaccatctgccagg
aagctgctgcatttctattttgtgcagcattgatcatcaatctttttgag
cttctaagatagaagcatcctactgaacaccttgcatcatccctagaggt
tcttgccaaaatctttcatctcacatggtgagaaactgctcccaagtaga
ttcctatgtattcatttgtattctctaccacccacaaaagccaatctgat
actcccttggttctactgcaaatacttgcagcaaattctaagactctaat
tagtgcatctatgctctttacagcagaaatatctagtagtaacatttata
tttcacatttggcagtcttcaaaaatacattcctaaaatcatcgaaagtc
atgctataaaggtcaattgagctgctaagatacatttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_48473605_48474466
seq2: B6Ng01-096P08.b_49_910

seq1  GAATTCTCCACCCTGCCTTAACCACTTGATAACATGTGAAAAGGAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACCCTGCCTTAACCACTTGATAACATGTGAAAAGGAACAAA  50

seq1  AAGGCTCCTAACACTGGAGAAAGTTCAAGGCCAGACATACCTTGTAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCTAACACTGGAGAAAGTTCAAGGCCAGACATACCTTGTAAAGC  100

seq1  TGTTCCCCGCTTTACTTCTGATAGACTGTCCTGAATTTCGTTAGAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCGCTTTACTTCTGATAGACTGTCCTGAATTTCGTTAGAAAGTT  150

seq1  CAAGGCCAGACATACCTTGTAAAGCTGTTCCCCACTTTACTTCTGATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGACATACCTTGTAAAGCTGTTCCCCACTTTACTTCTGATAGA  200

seq1  CTGTCTTGAATTTCATTAGAAAGTTCAAGGCTAGACATACCTTATAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGAATTTCATTAGAAAGTTCAAGGCTAGACATACCTTATAAAGC  250

seq1  TGTAACGTGACCGTGACTCCCAGTTCTGGTTCCGGAATGAGGGATCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACGTGACCGTGACTCCCAGTTCTGGTTCCGGAATGAGGGATCTTCC  300

seq1  TTGTGCCAGTCTGATGGTAGTTCCTGGGTGTCAGCACCACTTATTCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCAGTCTGATGGTAGTTCCTGGGTGTCAGCACCACTTATTCTGAG  350

seq1  CTTTTGTGTCCGCCGGCAAGAAAGACGCAACAAACCGGAATCTTCTGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGTCCGCCGGCAAGAAAGACGCAACAAACCGGAATCTTCTGCGG  400

seq1  CAAAAGCTTTATTGCTTACATCTTCAGGAGCAAGAGAGAGAATGGCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTTTATTGCTTACATCTTCAGGAGCAAGAGAGAGAATGGCAAAA  450

seq1  CCCCGTCCCTTTTAAGGAGAATTATCCTTCGCCTAGACGTGTCGCTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTCCCTTTTAAGGAGAATTATCCTTCGCCTAGACGTGTCGCTCCCT  500

seq1  GATTGGCTGCAGCCCATTGGCCTAGTTGTCATCATGGGGAAGGCAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTGCAGCCCATTGGCCTAGTTGTCATCATGGGGAAGGCAGAGCA  550

seq1  CATGGAGTGGAGAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTGGAGAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCA  600

seq1  TTTAGAACACAGGATGTCAGCACCATCTTGTAAAGGCGAATGTGAGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACACAGGATGTCAGCACCATCTTGTAAAGGCGAATGTGAGGGTG  650

seq1  GCTCCCCACACTTTGTCCTCTTAGATTTAATTTGACAGTGTCCTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCACACTTTGTCCTCTTAGATTTAATTTGACAGTGTCCTTTGTTT  700

seq1  CTGTTATATGAAATCATTGGGGCATTGTTGTTTTTTTAGCACTTCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATATGAAATCATTGGGGCATTGTTGTTTTTTTAGCACTTCTTTCA  750

seq1  AAGTCTAGTAGGATTCTGCAATAAAAACATGAGGCCCTTGGCTTTAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGTAGGATTCTGCAATAAAAACATGAGGCCCTTGGCTTTAGGGG  800

seq1  GGCAGGGTGTTTGTTATGGGTTTATTTAAATCATTGACATGATCTTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTGTTTGTTATGGGTTTATTTAAATCATTGACATGATCTTGATT  850

seq1  TAACTTAGATAA  862
      ||||||||||||
seq2  TAACTTAGATAA  862

seq1: chr10_48592701_48593897
seq2: B6Ng01-096P08.g_66_1254 (reverse)

seq1  CCAATATGTATCTTAGCAAGGGCTTCAAAATGAACTTTATAGCATGACAT  50
      |||| |||||||||||||   |||   || ||| |||||||||||||| |
seq2  CCAA-ATGTATCTTAGCA---GCT--CAATTGACCTTTATAGCATGAC-T  43

seq1  CTGAATGA-TCTAGG-ATGTATTTATTGAAGACTG-CAAATGTGAATATA  97
       |  |||| | |||| |||||||| |||||||||| |||||||||| |||
seq2  TTCGATGATTTTAGGAATGTATTT-TTGAAGACTGCCAAATGTGAA-ATA  91

seq1  TAAATG-TACTACTTAGATA-TTCTGCTGTAAAGAGCATAGATGGCACTA  145
      |||||| |||||| |||||| |||||||||||||||||||||| ||||||
seq2  TAAATGTTACTAC-TAGATATTTCTGCTGTAAAGAGCATAGAT-GCACTA  139

seq1  AATATGAGTCTTAAGAATTGGCTGCAAGTATTTGCAGTAGAACCAAGGGA  195
      | || ||||||| |||||| ||||||||||||||||||||||||||||||
seq2  ATTA-GAGTCTT-AGAATTTGCTGCAAGTATTTGCAGTAGAACCAAGGGA  187

seq1  GTATCAGATTGGCTTTTGTGGGTGGTAGAGAATACAAATGAATACATAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGATTGGCTTTTGTGGGTGGTAGAGAATACAAATGAATACATAGG  237

seq1  AATCTACTTGGGAGCAGTTTCTCACCATGTGAGATGAAAGATTTTGGCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTTGGGAGCAGTTTCTCACCATGTGAGATGAAAGATTTTGGCAA  287

seq1  GAACCTCTAGGGATGATGCAAGGTGTTCAGTAGGATGCTTCTATCTTAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCTAGGGATGATGCAAGGTGTTCAGTAGGATGCTTCTATCTTAGA  337

seq1  AGCTCAAAAAGATTGATGATCAATGCTGCACAAAATAGAAATGCAGCAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAAAGATTGATGATCAATGCTGCACAAAATAGAAATGCAGCAGC  387

seq1  TTCCTGGCAGATGGTACAAGATAAAATATAAGTAAGTGACGATGCTACAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCAGATGGTACAAGATAAAATATAAGTAAGTGACGATGCTACAT  437

seq1  AACCATTTTTATGATCCCAAAGATATAGGAAGTGGTGTCTTCTCTATAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTTTATGATCCCAAAGATATAGGAAGTGGTGTCTTCTCTATAAG  487

seq1  TTCAAAGAGGACATGTCACTCAGAGAACGTCACTGATGCGTTGGAGTATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAGGACATGTCACTCAGAGAACGTCACTGATGCGTTGGAGTATA  537

seq1  TTCAATCAAAATTAGTTAAAAATGCCATTCATTTCTTTTATAATGTCAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAAAATTAGTTAAAAATGCCATTCATTTCTTTTATAATGTCAAG  587

seq1  TGAAGTAGTCACTCAACTACTTTCTTAATGTCAAGGTAGAAGGCAATGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGTCACTCAACTACTTTCTTAATGTCAAGGTAGAAGGCAATGTC  637

seq1  CTGATATGACAAAAACTACATACCAGTATTTTATCCTCATTCTCAGAAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGACAAAAACTACATACCAGTATTTTATCCTCATTCTCAGAAGC  687

seq1  CTACAGCTAACTTACTAAATGACAAATTGAAAAGACCAAATGAAATTAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTAACTTACTAAATGACAAATTGAAAAGACCAAATGAAATTAGC  737

seq1  ATGAATGAATTTCCAGATGTGATTTATATAGTGTTCTACCCCTAATGCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAATTTCCAGATGTGATTTATATAGTGTTCTACCCCTAATGCAT  787

seq1  ATTAGAAAGAATATCATAAGCATAAAAGGAAAAAAGTGGCTAGGACCAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAGAATATCATAAGCATAAAAGGAAAAAAGTGGCTAGGACCAAG  837

seq1  TCATCCCAGTAAAATGCCATAAATGTTTCCGTCAGTTCCAAGATAGAAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCAGTAAAATGCCATAAATGTTTCCGTCAGTTCCAAGATAGAAAC  887

seq1  TAACTTTTAGATTCAACGTTGAAAAAAGAAATATATCATTTCTATTGAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTAGATTCAACGTTGAAAAAAGAAATATATCATTTCTATTGAAA  937

seq1  TAATAGAAATGGATTCAAGATAAAAGTCAACAAAATAATTATTAAAAATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAATGGATTCAAGATAAAAGTCAACAAAATAATTATTAAAAATA  987

seq1  TTGCACATCACCAGCCTTTTCCTAAAGGGTTAATCTACAATGGATGATTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACATCACCAGCCTTTTCCTAAAGGGTTAATCTACAATGGATGATTG  1037

seq1  TGTATAATAAGACAGGAAAAGCATAGAGATTATCTGAGGTTATTTAGATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATAAGACAGGAAAAGCATAGAGATTATCTGAGGTTATTTAGATA  1087

seq1  TTCTACAAACAGCCTACCACCATGATCTACTTCAGAGTGTGGATATATAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAAACAGCCTACCACCATGATCTACTTCAGAGTGTGGATATATAT  1137

seq1  GAACCAGATAATAGGCTTTTGCACAAGTCTATTTCAAGGAGCCTTTGAAT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGATAATAGGCTTTTGCACAAGTCTATTTCAAGGAGCCTTTGAAT  1187

seq1  TC  1197
      ||
seq2  TC  1189