BAC Information

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BAC

Clone NameB6Ng01-097C11
Chromosome10 (Build37)
Map Location 39,672,220 - 39,822,586
singlet/doubletdoublet
Overlap geneLOC100041085, BC021785, AI317395, EG666342, Slc16a10
Upstream geneLama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994
Downstream geneBxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097C11.bB6Ng01-097C11.g
ACCDH907601DH907602
length605703
definitionDH907601|Mus musculus domesticus DNA, BAC clone: B6Ng01-097C11, 5' end.DH907602|Mus musculus domesticus DNA, BAC clone: B6Ng01-097C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,821,983 - 39,822,586)(39,672,220 - 39,672,919)
sequence
gaattctttttaaatccctcaatcattcttttactaggagataaattaat
acatttgatgtatttggtgaatgagtctccagagaactgtatgcttgttt
tactactaactagctccatggccatttggagaattatttagtcgttgtga
ccatctcctatcctcccagttaataattgttttgcaggattaccacaaag
agttaatgacatctgtatatgcaaaggcactggctgtgtgcttggccctt
tggggtgtttgggggatatcttttctgttcattttctttatgatctaaca
ttggaatgaaattcattcttctccgctccctctccagttgcttcagggaa
gaaatccaggaacattacagggcttgcctcaaatctctgaaaagccacat
gtaagcaatatgagtgttcctgccagaattagtcgcaggttcatgcctcg
aaagcctcagcccatgggagttgaggcaggaggatttttcagaaacaaaa
caaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaagg
aaaggaaaggaaaggaaaggggaaaggataaaggaaagggtagggaaggg
aaggg
gaattcttacttaaatagacctcttggcttcaggtggatgattgggacta
gacttctatggatcatgacagcaccaaacactcgaacagatgttctggcc
agagttccctgatccctaaaatctcacatgacagccagggtcacgagcag
gtttcccctttgattaggatgatatagatgtgtgtactggactcttgatt
gcacttgagcatttcatactggattaagtccaggatgcttttcaatctga
taattaagtggactgtatccaaccaggggcctcaggcagatcctttcaaa
aagtctaaggaggaattgggagtctgctaacttccttaacttcattaaca
tctgttaacttcattaacaaaggttatggacccagaacctgtgtacttga
tggaaaatgagttaaccctattaagggtaccatagacttgtagcagacaa
aatgtgggtgtttgcttagattgttcacttagaaggagcatttgaaaagc
agagctttcaggctgcagagatgtctcagcgattaagggcactgactgct
cttccagaggtcctgagttcaattcccaacaaccacatggtggctcacaa
ccatctgcaataagattggatgccctctttctggtatatgtctgaagata
tctacggtgcactcatataaacaagaaataaagaaataaaagaaaagaaa
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39821983_39822586
seq2: B6Ng01-097C11.b_32_636 (reverse)

seq1  CCCTTCCCTTCCCTTCCCTTTCCTTTTTCCTTTCCCCTTTCCTTTCCTTT  50
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  CCCTTCCCTTCCCTACCCTTTCCTTTATCCTTTCCCCTTTCCTTTCCTTT  50

seq1  CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT  100

seq1  CCTTGTTTTGTTTCTGAAAAATCCTCCTGCCTCAACTCCCATGGGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTTGTTTCTGAAAAATCCTCCTGCCTCAACTCCCATGGGCTGAG  150

seq1  GCTTTCGAGGCATGAACCTGCGACTAATTCTGGCAGGAACACTCATTTTG  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTTTCGAGGCATGAACCTGCGACTAATTCTGGCAGGAACACTCATATTG  200

seq1  CTTACATGTGGCTTTTCAGAGATTTGAGGCAAGCCCTGTAATGTTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGTGGCTTTTCAGAGATTTGAGGCAAGCCCTGTAATGTTCCTGG  250

seq1  ATTTCTTCCCTGAAGCAACTGGAGAGGGAGCGGAGAAGAATGAATTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCCTGAAGCAACTGGAGAGGGAGCGGAGAAGAATGAATTTCAT  300

seq1  TCCAATGTTAGATCATAAAGAAAATGAACAGAAAAGATATCCCCCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGTTAGATCATAAAGAAAATGAACAGAAAAGATATCCCCCAAACA  350

seq1  CCCCAAAGGGCCAAGCACACAGCCAGTGCCTTTGCATATACAGATGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGGGCCAAGCACACAGCCAGTGCCTTTGCATATACAGATGTCAT  400

seq1  TAACTCTTTGTGGTAATCCTGCAAAACAATTATTAACTGGGAGGATAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTGTGGTAATCCTGCAAAACAATTATTAACTGGGAGGATAGGA  450

seq1  GATGGTCACAACGACTAAATAATTCTCCAAATGGCCATGGAGCTAGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCACAACGACTAAATAATTCTCCAAATGGCCATGGAGCTAGTTAG  500

seq1  TAGTAAAACAAGCATACAGTTCTCTGGAGACTCATTCACCAAATACATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAACAAGCATACAGTTCTCTGGAGACTCATTCACCAAATACATCA  550

seq1  AATGTATTAATTTATC-AGTGGTAAAAGAATGATTGAGGGATTTAAAAAG  599
      ||||||||||||||||   | |||||||||||||||||||||||||||||
seq2  AATGTATTAATTTATCTCCTAGTAAAAGAATGATTGAGGGATTTAAAAAG  600

seq1  AATTC  604
      |||||
seq2  AATTC  605

seq1: chr10_39672220_39672919
seq2: B6Ng01-097C11.g_61_763

seq1  GAATTCTTACTAAATTAGACCTCTTGGCTTCAGGTGGATGATTGGGACTA  50
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTAAATAGACCTCTTGGCTTCAGGTGGATGATTGGGACTA  50

seq1  GACCTCTATGGATCATGACAGCACCAAACACTCGAACAGATGTTCTGGCC  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTATGGATCATGACAGCACCAAACACTCGAACAGATGTTCTGGCC  100

seq1  AGAGTTCCCTGATCCCTAAAATCTCACATGACAGCCAGGGTCACGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCCTGATCCCTAAAATCTCACATGACAGCCAGGGTCACGAGCAG  150

seq1  GTTTCCCCTTTGATTAGGATGATATAGATGTGTGTACTGGACTCTTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCTTTGATTAGGATGATATAGATGTGTGTACTGGACTCTTGATT  200

seq1  GCACTTGAGCATTTCATACTGGATTAAGTCCAGGATGCTTTTCAATCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGAGCATTTCATACTGGATTAAGTCCAGGATGCTTTTCAATCTGA  250

seq1  TAATTAAGTGGACTGTATCCAACCAGGGGCCTCAGGCAGATCCTTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGTGGACTGTATCCAACCAGGGGCCTCAGGCAGATCCTTTCAAA  300

seq1  AAGTCTAAGGAGGAATTGGGAGTCTGCTAACTTCCTTAACTTCATTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAGGAGGAATTGGGAGTCTGCTAACTTCCTTAACTTCATTAACA  350

seq1  TCTGTTAACTTCATTAACAAAGGTTATGGACCCAGAACCTGTGTACTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAACTTCATTAACAAAGGTTATGGACCCAGAACCTGTGTACTTGA  400

seq1  TGGAAAATGAGTTAACCCTATTAAGGGTACCATAGACTTGTAGCAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGAGTTAACCCTATTAAGGGTACCATAGACTTGTAGCAGACAA  450

seq1  AATGTGGGTGTTTGCTTAGATTGTTCACTTAGAAGGAGCATTTGAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGTGTTTGCTTAGATTGTTCACTTAGAAGGAGCATTTGAAAAGC  500

seq1  AGAGCTTTCAGGCTGCAGAGATGTCTCAGCGATTAAGGGCACTGACTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTCAGGCTGCAGAGATGTCTCAGCGATTAAGGGCACTGACTGCT  550

seq1  CTTCCAGAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAA  600

seq1  CCATCTGCAATAAGATTGGATGCCCTC-TTCTGGTATATGTCTGAAGATA  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATCTGCAATAAGATTGGATGCCCTCTTTCTGGTATATGTCTGAAGATA  650

seq1  GCTACGGTGCACTCACATAAACAAGAAAGAAAGAAAGAAA--GAAAGAAA  697
       |||||||||||||| |||||||||||| ||||||| |||   |||||||
seq2  TCTACGGTGCACTCATATAAACAAGAAATAAAGAAATAAAAGAAAAGAAA  700

seq1  GAA  700
      |||
seq2  GAA  703