BAC Information

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BAC

Clone NameB6Ng01-097E05
Chromosome10 (Build37)
Map Location 88,427,288 - 88,581,598
singlet/doubletdoublet
Overlap geneTmem16d
Upstream geneTyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097E05.bB6Ng01-097E05.g
ACCDH907684DH907685
length1,0201,179
definitionDH907684|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E05, 5' end.DH907685|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,427,288 - 88,428,239)(88,580,408 - 88,581,598)
sequence
gaattcagaacttttcagctggggaacggcggtaacccgtaagtatagct
ttacgaggtaagcctggccttgaactttctaaggaaattcaagacagtct
atcagaagtaaagtggaaaatagctttataaggtatgtttggccttgaac
tttctctagtgttagaagcccttttgttccttttcacatgttatcaagtg
gttaaggcagggcggattctggatgaagttcaggacaatctatcagaagt
aaagcggggagagagaataggagcaaagagaaaatatggttcacaaaata
agtatacaggcctttccaagggtcttgaacccgaggaaaagtttaggtca
ggtaagaatacctggggagagattagaaggaaggagaagagaaaagaaaa
gaaaaaagatcaattagagaagccagttcttaatagttctgaatcagatg
aaaaggctattagggcctggaaggcgctctcccgagcaggtgaagccact
ggacaataatgacagaggcaggctcttgcagcctacaaggtcttattgtc
caccctggagttgtagatcaggattgtaaaggggaacttcaggttctctg
ttcttgtcctcaagttgtcttttctatatcacaaagagacagaatagctc
aactaataattttgccaagcctacatggctgttttttcttcctctgatat
tcctagagctgccagagagattggttctactggaaatgattctgattact
taataatgccttttagattgttgtcaaattttatctactcacgtaggggt
aaaccctcgtggcgtcaggccattacaggtctgacaaatggatgtcacgc
atatttcctcctttgagagaaatcattatttatatgttagataagaagag
atcacctccatacctttaaatgattttcaaaagcttgttgagaaacagta
agaaacccacttaaaaggggattgtgtatatactgattggatcaaaaact
ggcatagtgctatgtggcta
gaattctgataaggtaaattactaatacatacataaacatgagcaaggaa
gctaatttcagaccgtattcagttctgggaaagaaataagtagtgcgaag
aatgtgcttacagagtgggaggttctctacccggggtggccaaacaatca
ggctctgaaacgctgcatatatttcatgttcaaaatcctgagttccttca
gctcctctctttgagtatggctctgtggcaagactatgatgttttcttct
ctgtgggtctctgtggtctaaataccaatggtgattacattcatcagcgc
tggtgtgctaattgccacatgcttggtatcttcaagtcacacgtctgtga
tccggacacactagaagtcggaaccagaaatcaagatggtggtacttgca
ttcctgctggaggctgcattgttagtgtttctgtcttctagaggccacct
gcttgctgtggtccatggtcctggcttctgtctttaaaaccagcagcaaa
gcatttttttccacttcctctctctgattctgactgccatgagattccat
gtagtccaggaaagatgttccctgcttacaatccttaacataaacatatc
tggcagtctttattgatgtaaaggaacatatttgcagggctgagaaatga
ggtcagcctcataggcagataacgactgagccatgaacgttatctttatc
cctatttcctatccattttattttacaagagcatgacttgaaatgacaaa
tgcattgcgtaaagccacatgcttggctatagttttagaacctggacact
ctgactacatagattatctccttctccctgtgcccaattctgttctttct
ttttttaactacttgccatttgcatttatttaatgtttccttttcccata
aaggcaaagagtcacaccactcttagtcaccaaaatatgcccacacgccc
aaacacttgacacataatgtaagcttgtctaaaacatttatgaatgaaag
atgtatatttcaaatcatgtatatccattttatacagcaacttctggcat
gtataagctatttttaaagcctcaaaataagaaaaaattttaaaccccac
accatcatatcagcgtgtaaatggagggggttagaagagtctggcgtgcc
catccacaagggcactcggcttctcacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88427288_88428239
seq2: B6Ng01-097E05.b_43_996

seq1  GAATTCAGAACTTTTCAGCTGGGGAACGGCGGTAACCCGTAAGTATAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTTTTCAGCTGGGGAACGGCGGTAACCCGTAAGTATAGCT  50

seq1  TTACGAGGTAAGCCTGGCCTTGAACTTTCTAAGGAAATTCAAGACAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGGTAAGCCTGGCCTTGAACTTTCTAAGGAAATTCAAGACAGTCT  100

seq1  ATCAGAAGTAAAGTGGAAAATAGCTTTATAAGGTATGTTTGGCCTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGTAAAGTGGAAAATAGCTTTATAAGGTATGTTTGGCCTTGAAC  150

seq1  TTTCTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTG  200

seq1  GTTAAGGCAGGGCGGATTCTGGATGAAGTTCAGGACAATCTATCAGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGCAGGGCGGATTCTGGATGAAGTTCAGGACAATCTATCAGAAGT  250

seq1  AAAGCGGGGAGAGAGAATAGGAGCAAAGAGAAAATATGGTTCACAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGGGAGAGAGAATAGGAGCAAAGAGAAAATATGGTTCACAAAATA  300

seq1  AGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTTAGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTTAGGTCA  350

seq1  GGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAGAAGAGAAAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAGAAGAGAAAAGAAAA  400

seq1  GAAAAAAGATCAATTAGAGAAGCCAGTTCTTAATAGTTCTGAATCAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGATCAATTAGAGAAGCCAGTTCTTAATAGTTCTGAATCAGATG  450

seq1  AAAAGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAGCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAGCCACT  500

seq1  GGACAATAATGACAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATAATGACAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTC  550

seq1  CACCCTGGAGTTGTAGATCAGGATTGTAAAGGGGAACTTCAGGTTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGAGTTGTAGATCAGGATTGTAAAGGGGAACTTCAGGTTCTCTG  600

seq1  TTCTTGTCCTCAAGTTGTCTTTTCTATATCACAAAGAGACAGAATAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCCTCAAGTTGTCTTTTCTATATCACAAAGAGACAGAATAGCTC  650

seq1  AACTAATAATTTTGCCAAGCCTACATGGCTGTTTTTTCTTCCTCTGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATAATTTTGCCAAGCCTACATGGCTGTTTTTTCTTCCTCTGATAT  700

seq1  TCCTAGAGCTGCCAGAGAGATTGGTTCTACTGGAAATGATTCTGATTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGCTGCCAGAGAGATTGGTTCTACTGGAAATGATTCTGATTACT  750

seq1  TAATAATGCC-TTTAGATTGTTGTCAAATTTTATCTACTCACGTAGGGGT  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGCCTTTTAGATTGTTGTCAAATTTTATCTACTCACGTAGGGGT  800

seq1  AAACCCTCGTGGCGTCAGGCCATTACAGGTCTGACAAATGGATGTCACGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTCGTGGCGTCAGGCCATTACAGGTCTGACAAATGGATGTCACGC  850

seq1  ATATTTCCTCCTTTGAGAGAAATCAATATTTATATGTTTAGATAAGAAGA  899
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  ATATTTCCTCCTTTGAGAGAAATCATTATTTATATG-TTAGATAAGAAGA  899

seq1  GATCACCTCCATACC-TTAAATGATTTTCAAAAGC-TGTTGAGAAACAGT  947
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  GATCACCTCCATACCTTTAAATGATTTTCAAAAGCTTGTTGAGAAACAGT  949

seq1  AAGAA  952
      |||||
seq2  AAGAA  954

seq1: chr10_88580408_88581598
seq2: B6Ng01-097E05.g_68_1246 (reverse)

seq1  CCGTGAAGAAAAGCCGAGTGCCACTGGTGGAGTGGACA-GCCAGGACTCT  49
      ||||   || |||||||||||| || ||||| ||| || |||| ||||||
seq2  CCGT---GAGAAGCCGAGTGCC-CTTGTGGA-TGGGCACGCCA-GACTCT  44

seq1  TCTTTACCACCTCAAATTACAGCCTGATATGATGTGTGTGGGTTTTTAAA  99
      || | ||| |||| | |||||  ||||||||||| ||||||| |||  ||
seq2  TC-TAACCCCCTCCATTTACACGCTGATATGATG-GTGTGGGGTTT--AA  90

seq1  ATTTTTTTCTTATTTTGATGCTTTTAAAATAGCTTATAACTTGCCAGAAG  149
      | |||||||||||||||| ||||| |||||||||||| || |||||||||
seq2  AATTTTTTCTTATTTTGAGGCTTTAAAAATAGCTTAT-ACATGCCAGAAG  139

seq1  TTGCTGTATAAAATGGATATACATTGATTTG-AATATACATTCTTTCATT  198
      ||||||||||||||||||||||| ||||||| |||||||| |||||||||
seq2  TTGCTGTATAAAATGGATATACA-TGATTTGAAATATACA-TCTTTCATT  187

seq1  CATAAATGTTTTAGACAAGCTTACATTGTGTGTCAAGTGTTTGGGCGTGT  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  CATAAATGTTTTAGACAAGCTTACATTATGTGTCAAGTGTTTGGGCGTG-  236

seq1  TGGGCATATTTTGGTGACTAAGAGTGGTGTGACTCTTTGCCTTTATGGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATATTTTGGTGACTAAGAGTGGTGTGACTCTTTGCCTTTATGGGA  286

seq1  AAAGGAAACATTAAATAAATGCAAATGGCAAGTAGTTAAAAAAAGAAAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAACATTAAATAAATGCAAATGGCAAGTAGTTAAAAAAAGAAAGA  336

seq1  ACAGAATTGGGCACAGGGAGAAGGAGATAATCTATGTAGTCAGAGTGTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTGGGCACAGGGAGAAGGAGATAATCTATGTAGTCAGAGTGTCC  386

seq1  AGGTTCTAAAACTATAGCCAAGCATGTGGCTTTACGCAATGCATTTGTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAAAACTATAGCCAAGCATGTGGCTTTACGCAATGCATTTGTCA  436

seq1  TTTCAAGTCATGCTCTTGTAAAATAAAATGGATAGGAAATAGGGATAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTCATGCTCTTGTAAAATAAAATGGATAGGAAATAGGGATAAAG  486

seq1  ATAACGTTCATGGCTCAGTCGTTATCTGCCTATGAGGCTGACCTCATTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGTTCATGGCTCAGTCGTTATCTGCCTATGAGGCTGACCTCATTTC  536

seq1  TCAGCCCTGCAAATATGTTCCTTTACATCAATAAAGACTGCCAGATATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTGCAAATATGTTCCTTTACATCAATAAAGACTGCCAGATATGT  586

seq1  TTATGTTAAGGATTGTAAGCAGGGAACATCTTTCCTGGACTACATGGAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAAGGATTGTAAGCAGGGAACATCTTTCCTGGACTACATGGAAT  636

seq1  CTCATGGCAGTCAGAATCAGAGAGAGGAAGTGGAAAAAAATGCTTTGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGCAGTCAGAATCAGAGAGAGGAAGTGGAAAAAAATGCTTTGCTG  686

seq1  CTGGTTTTAAAGACAGAAGCCAGGACCATGGACCACAGCAAGCAGGTGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTAAAGACAGAAGCCAGGACCATGGACCACAGCAAGCAGGTGGC  736

seq1  CTCTAGAAGACAGAAACACTAACAATGCAGCCTCCAGCAGGAATGCAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAGACAGAAACACTAACAATGCAGCCTCCAGCAGGAATGCAAGT  786

seq1  ACCACCATCTTGATTTCTGGTTCCGACTTCTAGTGTGTCCGGATCACAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATCTTGATTTCTGGTTCCGACTTCTAGTGTGTCCGGATCACAGA  836

seq1  CGTGTGACTTGAAGATACCAAGCATGTGGCAATTAGCACACCAGCGCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGACTTGAAGATACCAAGCATGTGGCAATTAGCACACCAGCGCTGA  886

seq1  TGAATGTAATCACCATTGGTATTTAGACCACAGAGACCCACAGAGAAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAATCACCATTGGTATTTAGACCACAGAGACCCACAGAGAAGAA  936

seq1  AACATCATAGTCTTGCCACAGAGCCATACTCAAAGAGAGGAGCTGAAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATAGTCTTGCCACAGAGCCATACTCAAAGAGAGGAGCTGAAGGA  986

seq1  ACTCAGGATTTTGAACATGAAATATATGCAGCGTTTCAGAGCCTGATTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGATTTTGAACATGAAATATATGCAGCGTTTCAGAGCCTGATTGT  1036

seq1  TTGGCCACCCCGGGTAGAGAACCTCCCACTCTGTAAGCACATTCTTCGCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCACCCCGGGTAGAGAACCTCCCACTCTGTAAGCACATTCTTCGCA  1086

seq1  CTACTTATTTCTTTCCCAGAACTGAATACGGTCTGAAATTAGCTTCCTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATTTCTTTCCCAGAACTGAATACGGTCTGAAATTAGCTTCCTTG  1136

seq1  CTCATGTTTATGTATGTATTAGTAATTTACCTTATCAGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTTATGTATGTATTAGTAATTTACCTTATCAGAATTC  1179