BAC Information

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BAC

Clone NameB6Ng01-097E10
Chromosome10 (Build37)
Map Location 116,697,156 - 116,854,766
singlet/doubletdoublet
Overlap geneLyzs, Lyz, Cpsf6
Upstream genePtprr, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik
Downstream geneLOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097E10.bB6Ng01-097E10.g
ACCDH907694DH907695
length1,1181,097
definitionDH907694|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E10, 5' end.DH907695|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,697,156 - 116,697,915)(116,853,659 - 116,854,766)
sequence
gaattccagccagagggattaaaggtgtgtactaagggcttgtctgcatt
ccagccccatagtccctaggcaattttctgcaaaatccatctaagctgtg
gccagcccctccttcctgccctgcctatgtgggcagtaaaatgctctgca
ggacctgtcaaaaatagtggctcttgtcaaaatggcagcaccaggacatc
tcttcaacctggagctgtcccacaggagctgtccactgtggcaggcctcc
tctccagcctccctcctgtccctgagcagtctcactgagatggcacctca
gcaaaagcctgctgtagctgggtggtggtgaaaaaagccaccaatccttg
aacaggaaaacccaccaacccctgacaatcctcaatctgaaaagctccac
cccctcagaaatcctctttgttcagttccctgctgtctgctcccaggagc
agaggcagccactcctgggtttatccctccatgccctggaccctacaata
aatctttttcatgagatttgttgcctgatgtgactctctcatcagaagaa
gaaaacaagctatatacagagaagaagctaagggaaggagctgggcggag
gcactggggatacactcccctgggagctgcaatacctctgctggggaggc
atctcctcagagctgcgtggttcctgggcccccatgtctcaggattcctt
tcttctgttccacctcagagctgtgtggttcctgggattctgagtctcag
ggtacccgaccctctcacccgagcagagaaatacaagtcagatcacacag
acgtaggaggtctttggatgtgatcggagcagtcatgttgcgggataaaa
ttcctctataggaaaagtatggcaaatttaactaggtgttataattctct
tggccatggtacaaatgcattgatagaaacacaactagtagaagcagagg
attcctatgttagtcaggtcattatcatagtgtcccttcctgatcactct
ggcggcatcattggattctgtttgcatatactgttctgtgcctccgggta
cgtccctttgttttggtaatcccgaccgagctatgttcgcattctggcaa
ctataggttactgcataa
gaattcagaggaatgcatttgccatggcttgacagaaagtccccaagcac
cactccctccccaggtgccacgcttcacccctgcaagcgtgaggacatca
cattgcacggatgaaggagtagaaatggagtagaaggcaggaagctgacg
cctatggtcagggtaggggcacgtgacctcctggactgggcgggtgagct
cagtatgctgtacaccgacgagctgagcgctgaggtcacagactgggcaa
aatggagaaagacagtaagccaaccatcccgaccgggatacatacaagga
gaatggagatacaggggaatggagatgccctggctgtcccagaactcatt
ctgtagagcagactatcctggaactcagagatctgtctgactccacccct
tgagtgctgagattaaaggccacagtatgtgtcagggattggagttctct
gaatagacaagcagaagttctaaaatacctccgccgcagtattctgtccc
cttctgggctggagcctggccctgcacagccccttcagataagccttgct
cattttttccccccaaagatttatttattatatgtaagtgcactgtagca
ctgtagctgccctcagataccccagaagagggcatcagatttcgttatgg
atggttgtgagccaccatgtggttgctgggatttgaactcgggaccttta
gaagagcattcggcgctcttaaccactgagccatctcgccagcccgcctt
gctccttgaatcccagcttagaggcttagggtctcacctcaatgctaact
aggctcattcctgtctttcagagtatctctttggagattttacttctttg
agaacaagaaatgagcacccgcttagtactacaattccggtctgtatctt
gcatctctccttggcaaccttaggttcagagagaacctctgaatgttcag
ggatgccaagtaggaaaacctgtgaaacgcaagccaacgaggctagcatc
catcacgtgactcggccagtgagggctcctacatcctagcacttatccac
tgtagaggggcagtttcagcatcaggcatccccagtaccgaattcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_116697156_116697915
seq2: B6Ng01-097E10.b_423_1165

seq1  CAATCCTCAATCTGAAAAGCTCCACCCCCTCAGAAATCCTCTTTGTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCAATCTGAAAAGCTCCACCCCCTCAGAAATCCTCTTTGTTCAG  50

seq1  TTCCCTGCTGTCTGCTCCCAGGAGCAGAGGCAGCCACTCCTGGGTTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCTGTCTGCTCCCAGGAGCAGAGGCAGCCACTCCTGGGTTTATC  100

seq1  CCTCCATGCCCTGGACCCTACAATAAATCTTTTTCATGAGATTTGTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGCCCTGGACCCTACAATAAATCTTTTTCATGAGATTTGTTGCC  150

seq1  TGATGTGACTCTCTCATCAGAAGAAGAAAACAAGCTATATACAGAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGACTCTCTCATCAGAAGAAGAAAACAAGCTATATACAGAGAAGA  200

seq1  AGCTAAGGGAAGGAGCTGGGCGGAGGCACTGGGGATACACTCCCCTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGGGAAGGAGCTGGGCGGAGGCACTGGGGATACACTCCCCTGGGA  250

seq1  GCTGCAATACCTCTGCTGGGGAGGCATCTCCTCAGAGCTGCGTGGTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAATACCTCTGCTGGGGAGGCATCTCCTCAGAGCTGCGTGGTTCCT  300

seq1  GGGCCCCCATGTCTCAGGATTCCTTTCTTCTGTTCCACCTCAGAGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCCATGTCTCAGGATTCCTTTCTTCTGTTCCACCTCAGAGCTGTG  350

seq1  TGGTTCCTGGGATTCTGAGTCCCAGGGTACCCGACCCTCTCACCCGAGCA  400
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGTTCCTGGGATTCTGAGTCTCAGGGTACCCGACCCTCTCACCCGAGCA  400

seq1  GAGAAATACAAGTCAGATCACACAGACGTAGGAGGTCTTTGGATGTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATACAAGTCAGATCACACAGACGTAGGAGGTCTTTGGATGTGATC  450

seq1  GGAGCAGTCATGTTGCGGGATTAAAATTCCTCTATAGGAAAAGTAGGGCA  500
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  GGAGCAGTCATGTTGCGGGA-TAAAATTCCTCTATAGGAAAAGTATGGCA  499

seq1  AATTTAACTAGGTTTTATAAGTTCTCTTGGCCATGGTACAAATGCATTGA  550
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  AATTTAACTAGGTGTTATAA-TTCTCTTGGCCATGGTACAAATGCATTGA  548

seq1  TAGAAACACAACTAGTAGAAGCAGGAGGGATTCCTTTGTCTGGTCTGGTC  600
      ||||||||||||||||||||||||   |||||||| ||| | ||| ||||
seq2  TAGAAACACAACTAGTAGAAGCAG--AGGATTCCTATGT-TAGTCAGGTC  595

seq1  ATTTATCATAGTGTCCCCTTCCCTGATCTCTCTGGGGGCATCCATTGTAA  650
      | |||||||||||||||  | ||||||| |||||| ||||| |||||  |
seq2  A-TTATCATAGTGTCCC--TTCCTGATCACTCTGGCGGCAT-CATTG-GA  640

seq1  TTCTGTTTTGCTTATACTGTTCTGTTCCCTCTGGGTCCCTTCTCTTCTGT  700
      ||||| ||||| |||||||||||| | |||| ||||  | || ||| |||
seq2  TTCTG-TTTGCATATACTGTTCTG-TGCCTCCGGGT-ACGTCCCTT-TGT  686

seq1  TTTGTTATTTCAGACAGTAGCTTCTGTTCAGTATCTGGCAATCTTAGGTT  750
      |||| || | | ||| | ||| | |||||    ||||||||   |||| |
seq2  TTTGGTAATCCCGACCG-AGC-TATGTTCGCATTCTGGCAACTATAGG-T  733

seq1  TACTGCATAA  760
      ||||||||||
seq2  TACTGCATAA  743

seq1: chr10_116853659_116854766
seq2: B6Ng01-097E10.g_68_1164 (reverse)

seq1  GTGAATCAGGTACTGGGGATGCCTGGATGCTGGAAACTGCCCCTCTCCAA  50
      ||||||  |||||||||||||||| |||||| |||||||||||||| | |
seq2  GTGAATTCGGTACTGGGGATGCCT-GATGCT-GAAACTGCCCCTCTAC-A  47

seq1  GTGGATTAGGTGCTAGGATGTTGGGAGCCCTCACTGGGCGAGTCACGTGA  100
      ||||| || ||||||||||| | |||||||||||||| ||||||||||||
seq2  GTGGA-TAAGTGCTAGGATG-TAGGAGCCCTCACTGGCCGAGTCACGTGA  95

seq1  TGGGATGCTAGCCTCGTTGGGCCTGCCGTTTTCACAGGTTTTCCTACTTG  150
      | |||||||||||||||| ||| |||   |||||||||||||||||||||
seq2  T-GGATGCTAGCCTCGTT-GGCTTGC--GTTTCACAGGTTTTCCTACTTG  141

seq1  GCATCCCTGAACATTCAGAGGTTCTTCTCTGAACCTAAGGTTGCCAAGGA  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCATCCCTGAACATTCAGAGGTTC-TCTCTGAACCTAAGGTTGCCAAGGA  190

seq1  GAGATGCAAGATACAGACCGGAATTGTAGAACTAAGCGGGTGCCCATTTC  250
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  GAGATGCAAGATACAGACCGGAATTGTAGTACTAAGCGGGTGCTCATTTC  240

seq1  TTGTTCTCAAAGAAGTAAAATCTCCAAAGAGATACTCTGAAAGACAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCAAAGAAGTAAAATCTCCAAAGAGATACTCTGAAAGACAGGAA  290

seq1  TGAGCCTAGTTAGCATTGAGGTGAGAACCCTAAGCCTCTAAGCTGGGATT  350
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGCCTAGTTAGCATTGAGGTGAG-ACCCTAAGCCTCTAAGCTGGGATT  339

seq1  CAAGGAGCAAGGCGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCGCCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCAAGGCGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCGCCGAA  389

seq1  TGCTCTTCTAAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTAAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTC  439

seq1  ACAACCATCCATAACGAAATCTGATGCCCTCTTCTGGGGTATCTGAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCCATAACGAAATCTGATGCCCTCTTCTGGGGTATCTGAGGGC  489

seq1  AGCTACAGTGCTACAGTGCACTTACATATAATAAATAAATCTTTGGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGTGCTACAGTGCACTTACATATAATAAATAAATCTTTGGGGGG  539

seq1  AAAAAATGAGCAAGGCTTATCTGAAGGGGCTGTGCAGGGCCAGGCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAGCAAGGCTTATCTGAAGGGGCTGTGCAGGGCCAGGCTCCAG  589

seq1  CCCAGAAGGGGACAGAATACTGCGGCGGAGGTATTTTAGAACTTCTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGGGGACAGAATACTGCGGCGGAGGTATTTTAGAACTTCTGCTT  639

seq1  GTCTATTCAGAGAACTCCAATCCCTGACACATACTGTGGCCTTTAATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCAGAGAACTCCAATCCCTGACACATACTGTGGCCTTTAATCTC  689

seq1  AGCACTCAAGGGGTGGAGTCAGACAGATCTCTGAGTTCCAGGATAGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAAGGGGTGGAGTCAGACAGATCTCTGAGTTCCAGGATAGTCTG  739

seq1  CTCTACAGAATGAGTTCTGGGACAGCCAGGGCATCTCCATTCCCCTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGAATGAGTTCTGGGACAGCCAGGGCATCTCCATTCCCCTGTAT  789

seq1  CTCCATTCTCCTTGTATGTATCCCGGTCGGGATGGTTGGCTTACTGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTCCTTGTATGTATCCCGGTCGGGATGGTTGGCTTACTGTCTT  839

seq1  TCTCCATTTTGCCCAGTCTGTGACCTCAGCGCTCAGCTCGTCGGTGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTTGCCCAGTCTGTGACCTCAGCGCTCAGCTCGTCGGTGTACA  889

seq1  GCATACTGAGCTCACCCGCCCAGTCCAGGAGGTCACGTGCCCCTACCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTGAGCTCACCCGCCCAGTCCAGGAGGTCACGTGCCCCTACCCTG  939

seq1  ACCATAGGCGTCAGCTTCCTGCCTTCTACTCCATTTCTACTCCTTCATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGGCGTCAGCTTCCTGCCTTCTACTCCATTTCTACTCCTTCATCC  989

seq1  GTGCAATGTGATGTCCTCACGCTTGCAGGGGTGAAGCGTGGCACCTGGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATGTGATGTCCTCACGCTTGCAGGGGTGAAGCGTGGCACCTGGGG  1039

seq1  AGGGAGTGGTGCTTGGGGACTTTCTGTCAAGCCATGGCAAATGCATTCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGGTGCTTGGGGACTTTCTGTCAAGCCATGGCAAATGCATTCCT  1089

seq1  CTGAATTC  1108
      ||||||||
seq2  CTGAATTC  1097