BAC Information

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BAC

Clone NameB6Ng01-097H14
Chromosome10 (Build37)
Map Location 40,447,382 - 40,616,864
singlet/doubletdoublet
Overlap gene9030224M15Rik, Cdc40, Wasf1
Upstream geneE130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo
Downstream geneGpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097H14.bB6Ng01-097H14.g
ACCDH907843DH907844
length1,198223
definitionDH907843|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H14, 5' end.DH907844|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,615,660 - 40,616,864)(40,447,382 - 40,447,604)
sequence
gaattccaggacagttgcctaagctactgaagcagtagggctttcttcag
caccatttccctgtactgaatctctgccatcggcaaaatgctgctataag
ctcatccatcttagagagagagagagagagagagaacaaggtttcctttg
ccacccctcccctctgttctccttaaacaggtcacgtgtgacttctctgg
ctctctcttaaatctgctccattcatactttcaatcatgccaccagggtc
agctgtgaccaagtggattcagtttcttctcactcaggatacgagcagtg
gctcactacctcagaacatgtagtctgacttttaggccactgccggtcac
agctgtcctcctaccccagtctccatttcccatacataatcaaggtcgtc
tatcttgagctatagtcacttccttggctttcttacaattcgatacactt
taccctagcattaaaaaaccgtcaggcttcattctcaaaatgcacttaaa
ggtaatttgagtagtatttgtgaggtagatgaaaatgaaaatcaggtaca
aaaaaaaaatcaaattaaagtgtcttgattttcaatgaaccattcgtctt
tctttaaagtttaacatgagtagtgtggagaaaaacagacgtaaaacagc
taagctaatgaaaagcaaagcaaatactctttactgggtatttcataaaa
atataaatgtgtcttgcccgtggacttactgggtgataccctttatttca
aatgcctttctataataactttcttcttaccaccacagaattctaatgat
agtaaagtaagtagtttttaaactgacagtttctggacctgacaatttct
cacaggctacttactggtcttgttgtttcaaacagccccctctcacactg
cagcccaagctggccctgaactttaagtgatacacctgactgagcctcct
cagtgctggggatacagtttcctgggtatgagagcgcacccagctggtag
cgactttcagttgagtgaatgaatttaccgagtggggcataggtggtgca
tacataatgcgtcgggctcaggggcttgagccgagaggactcatgggtgg
catgtcttgtctaccacacatcagacttgaaaatcaagtatagaacgggt
gaacggctaatgttagactctgtgatcaagcacaaggtctggtgggac
catcagagaccctaaataatttcttgcatttgttgcatgacaccgctgtg
ccttgcattaaatggaaagaaacataccctgtaggcatgaagcacaaatg
cctacagaataaataaatgaatgaatgaactttgtttcaaaccttgcttc
catttcacctccactactctaccatctgggaccctgggggtggatgtgat
gggcagggggcggggaagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40615660_40616864
seq2: B6Ng01-097H14.b_47_1244 (reverse)

seq1  GTCCCATCAGACCTTGTGCTTGTACACCAAGT---ACTTTACCCACTACG  47
      |||||| |||||||||||||||  |||  |||   || |||        |
seq2  GTCCCACCAGACCTTGTGCTTGATCACAGAGTCTAACATTA--------G  42

seq1  CCGTCTCGCCAGTCCTCTAACTTGGCTTTTCAAGTCTTGCTGTGTGGCTA  97
      |||| || || || || | |||| | |||||||||| || ||||||| ||
seq2  CCGT-TCACCCGTTCTAT-ACTT-GATTTTCAAGTC-TGATGTGTGG-TA  87

seq1  GACCAGCACTGCACCCCTTGAGTCCTCTCGCCTCAGCCCCCTGAG-CCGG  146
      ||| ||   |||  ||| |||||||||||| ||||  |||||||| ||| 
seq2  GACAAGACATGCCACCCATGAGTCCTCTCGGCTCAAGCCCCTGAGCCCGA  137

seq1  CGCA-TATGTATGCACCA-CTATG-CCCACTCGGTAAATTCATTCACTC-  192
      |||| ||||||||||||| ||||| |||||||||||||||||||||||| 
seq2  CGCATTATGTATGCACCACCTATGCCCCACTCGGTAAATTCATTCACTCA  187

seq1  ACTGAAAGTCGCTACAGGCTGGGTGCGCCTCCTCATACCC-GGAAACTTG  241
      |||||||||||||||  |||||||||||   ||||||||| |||||| ||
seq2  ACTGAAAGTCGCTACCAGCTGGGTGCGC--TCTCATACCCAGGAAAC-TG  234

seq1  TAATCCCAGCACTGAGGAGGCTCAGTCAGGTGTATCACCTTAAGTTCAGG  291
      ||  |||||||||||||||||||||||||||||||||| | |||||||||
seq2  TATCCCCAGCACTGAGGAGGCTCAGTCAGGTGTATCACTTAAAGTTCAGG  284

seq1  GCCAGCTTGGGCTGCAGTGTGAGAGGGGGCTGTTTGAAAACAACAAGACC  341
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCAGCTTGGGCTGCAGTGTGAGAGGGGGCTGTTTG-AAACAACAAGACC  333

seq1  AGTAAGTAGCCTGTGAGAAATTGTCAGGTCCAGAAACTGTCAGTTTAAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTAGCCTGTGAGAAATTGTCAGGTCCAGAAACTGTCAGTTTAAAA  383

seq1  ACTACTTACTTTACTATCATTAGAATTCTGTGGTGGTAAGAAGAAAGTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTACTTTACTATCATTAGAATTCTGTGGTGGTAAGAAGAAAGTTA  433

seq1  TTATAGAAAGGCATTTGAAAT-AAGGGTATCACCCAGTAAGTCCACGGGC  490
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTATAGAAAGGCATTTGAAATAAAGGGTATCACCCAGTAAGTCCACGGGC  483

seq1  AAGACACATTTATATTTTTATGAAATACCCAGTAAAGAGTATTTGCTTTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACATTTATATTTTTATGAAATACCCAGTAAAGAGTATTTGCTTTG  533

seq1  CTTTTCATTAGCTTAGCTGTTTTACGTCTGTTTTTCTCCACACTACTCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTAGCTTAGCTGTTTTACGTCTGTTTTTCTCCACACTACTCAT  583

seq1  GTTAAACTTTAAAGAAAGACGAATGGTTCATTGAAAATCAAGACACTTTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTTTAAAGAAAGACGAATGGTTCATTGAAAATCAAGACACTTTA  633

seq1  ATTTGATTTTTTTTTTGTACCTGATTTTCATTTTCATCTACCTCACAAAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTTTTTTTTGTACCTGATTTTCATTTTCATCTACCTCACAAAT  683

seq1  ACTACTCAAATTACCTTTAAGTGCATTTTGAGAATGAAGCCTGACGGTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCAAATTACCTTTAAGTGCATTTTGAGAATGAAGCCTGACGGTTT  733

seq1  TTTAATGCTAGGGTAAAGTGTATCGAATTGTAAGAAAGCCAAGGAAGTGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTAGGGTAAAGTGTATCGAATTGTAAGAAAGCCAAGGAAGTGA  783

seq1  CTATAGCTCAAGATAGACGACCTTGATTATGTATGGGAAATGGAGACTGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTCAAGATAGACGACCTTGATTATGTATGGGAAATGGAGACTGG  833

seq1  GGTAGGAGGACAGCTGTGACCGGCAGTGGCCTAAAAGTCAGACTACATGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGGACAGCTGTGACCGGCAGTGGCCTAAAAGTCAGACTACATGT  883

seq1  TCTGAGGTAGTGAGCCACTGCTCGTATCCTGAGTGAGAAGAAACTGAATC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTAGTGAGCCACTGCTCGTATCCTGAGTGAGAAGAAACTGAATC  933

seq1  CACTTGGTCACAGCTGACCCTGGTGGCATGATTGAAAGTATGAATGGAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTCACAGCTGACCCTGGTGGCATGATTGAAAGTATGAATGGAGC  983

seq1  AGATTTAAGAGAGAGCCAGAGAAGTCACACGTGACCTGTTTAAGGAGAAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAGAGAGAGCCAGAGAAGTCACACGTGACCTGTTTAAGGAGAAC  1033

seq1  AGAGGGGAGGGGTGGCAAAGGAAACCTTGTTCTCTCTCTCTCTCTCTCTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAGGGGTGGCAAAGGAAACCTTGTTCTCTCTCTCTCTCTCTCTC  1083

seq1  TCTAAGATGGATGAGCTTATAGCAGCATTTTGCCGATGGCAGAGATTCAG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATGGATGAGCTTATAGCAGCATTTTGCCGATGGCAGAGATTCAG  1133

seq1  TACAGGGAAATGGTGCTGAAGAAAGCCCTACTGCTTCAGTAGCTTAGGCA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAAATGGTGCTGAAGAAAGCCCTACTGCTTCAGTAGCTTAGGCA  1183

seq1  ACTGTCCTGGAATTC  1205
      |||||||||||||||
seq2  ACTGTCCTGGAATTC  1198

seq1: chr10_40447382_40447604
seq2: B6Ng01-097H14.g_76_298

seq1  CATCAGAGACCCTAAATAATTTCTTGCATTTGTTGCATGACACCGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGACCCTAAATAATTTCTTGCATTTGTTGCATGACACCGCTGTG  50

seq1  CCTTGCATTAAATGGAAAGAAACATACCCTGTAGGCATGAAGCACAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCATTAAATGGAAAGAAACATACCCTGTAGGCATGAAGCACAAATG  100

seq1  CCTACAGAATAAATAAATGAATGAATGAACTTTGTTTCAAACCTTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGAATAAATAAATGAATGAATGAACTTTGTTTCAAACCTTGCTTC  150

seq1  CATTTCACCTCCACTACTCTACCATCTGGGACCCTGGGGGTGGATGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACCTCCACTACTCTACCATCTGGGACCCTGGGGGTGGATGTGAT  200

seq1  GGGCAGGGGGCGGGGAAGGGGGG  223
      |||||||||||||||||||||||
seq2  GGGCAGGGGGCGGGGAAGGGGGG  223