BAC Information

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BAC

Clone NameB6Ng01-098B06
Chromosome10 (Build37)2 (Build37)
Map Location 24,137,021 - 24,137,53786,800,397 - 86,801,558
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1
Downstream geneLOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098B06.bB6Ng01-098B06.g
ACCDH908269DH908270
length1,0121,141
definitionDH908269|Mus musculus domesticus DNA, BAC clone: B6Ng01-098B06, 5' end.DH908270|Mus musculus domesticus DNA, BAC clone: B6Ng01-098B06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,137,021 - 24,137,537)(86,800,397 - 86,801,558)
sequence
gaattctattgagtaattttggctgaatattcaaaagggaaattggtgtg
aagttccctttctttgttgggtctttgtgtggtttaggtatcagagtaaa
aatggccaccttcctgaaagcaatctacagatttaatgcaagccccatca
aaattccaactcaattcttcacagagttagaaagagcaatttgcaaattc
atctgaataacaaaaaaacctaggatagggaaaactattctcaacaataa
aaggaattctgggggaatcactatccctgaactcaagctctactacagag
caattgtgataaaaactgcatggtattggtagagtgacagggaggtagat
caatggaatagaactaaagactaagaaatgaacccagacacctatggtca
cttgatctttgagataggaactaaaaatcatgcagtggaataaagacagc
attttcaataaatggtgctggtggtgattagcatgtagaagaatgcaaat
gatccattcttacccccttatacaaagctcaagtccaagttgatcaagat
cctgcacataaaacaagatacactcaaactaatagaaaagttaagtgggg
aagagcctcaagcacatgaacacaggggcaatttccctaaacagaacacc
aatagcttatgctctaagatcaagaattgacaaatgggacctcataaaat
tgaaaagcttctgtaagacaaagggcatagtaagtaggataaaacgacaa
ccaacggattgggaaaagatctttaccaaccctacatataatagagggct
aataaccaatatatacaaagaactcaagaaattagactccaacaaaacag
ataacactattaaaaatggggtccagagctaaacaaagtattcttaactg
aggatactgaatggatgagaagcacctaaagaaatgttcacatcattagt
caccaggggaaactgaaatcaaacagccctgagattccacctcacacaag
tcagaatggcta
gaattcttttcaaaaataaaagaggacaaaggtttaaggatctgaatatt
tctgaagtatggatttccttgttatttccaaatatctgtgtattcatttt
cttaaaatggaaagacaaagcaagtcagccaaaaggtattattcagatct
tgttggagtacaaagtcccacagtagctattagtcaaatgagttctagta
atgtctataagtccaagtagagtagtgtatgccttttttaacctaataat
tctagacaaacttgcataagggtgctgagcataatcaaacctgtggtcat
ccttagagactaatttctaagaaagattggcatgctattgagaaccaaag
ttccaggaataattgagccagagatttccttttctaagccccacagcgaa
tagaatgaccaaatctttccaatgatataattacattgtagagttgtatg
tacactcatttttattggttcagaagagtgggtattttaacaggtatttg
tgtttatcagttatattctcaaaattgcaaaatattataaagttttcagt
gagatataatttaacttgagaagaatgattctataataataagatgcatg
cattataaacaataaactatacaaaaaaatctcagcttagttatgtttta
cactttatctttaatttgttttgttttattttatattttatttttcagtt
ccttaaacatgacagatgagacacaaaatttaaaattagtaaccactaca
aaacatacagtggatagcccagggcaaaggcagagctccagacccctccc
acatcaagacagcttgacttccaggtgctctgacacaaccaggctcatag
aagagacacagaaacctgccccagtacttgatgagacccccatgggatcc
accagaggtggacactatctgccctgcccagcagagacacatcttccctc
tagcccacagtttggccctgggcagagccagtgtgcacacccccctccca
cagcagagacagcttgtcagagagagctcttcacaacagctccagaagaa
aagaatttagtcacagacaaagccagtaaccttgagataaacgatagcaa
gcagctaacactaagcaaaagaaaacatgctatgtgacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_24137021_24137537
seq2: B6Ng01-098B06.b_71_140 (reverse)

seq1  TATGATACCTAAACCACAGAAAGATCCAACAAAGAAAGAGAACTTCAGAC  50
      | |||||||||||||||| ||||| ||||||||||||| |||||||| ||
seq2  TCTGATACCTAAACCACACAAAGACCCAACAAAGAAAGGGAACTTCACAC  50

seq1  CAATTTCCCTTATGAATA-TCGATGCCAAAATACTCAATAAAATCCTCGC  99
      ||||||||||| |||||| |                              
seq2  CAATTTCCCTTTTGAATATT------------------------------  70

seq1  AAAACGAATCCAAGAACTCATCAAAACGATCATCCATCGTGACCAAGTAG  149
                                                        
seq2  --------------------------------------------------  70

seq1  GCTTCATCCCAGGGATGCAGGGATGGTTTAATATACAGAAATCCATCAAT  199
                                                        
seq2  --------------------------------------------------  70

seq1  GTAATCCAGTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTA  249
                                                        
seq2  --------------------------------------------------  70

seq1  GTTAGATGCTGAGAAAGCATTTGACAAAATCCAACATCCCTTCATGATAA  299
                                                        
seq2  --------------------------------------------------  70

seq1  AAGTTTTGGAAAGTACTATTCACAGAAGATAGTTCCCTTCCTCCAATTGT  349
                                                        
seq2  --------------------------------------------------  70

seq1  GTTTTTAAATTATTAGTCATCTTTATGTATAAAAAGAAATGGAAGAACTT  399
                                                        
seq2  --------------------------------------------------  70

seq1  TGCAGCTTCTCTTAGATGAAAAATCCTTCATGGTTTGTGCTGACCTAGAA  449
                                                        
seq2  --------------------------------------------------  70

seq1  GTAGCAGTTGAAATGCCTGCAGGGGGTGTCCAGGATGAATATTCTGGAAA  499
                                                        
seq2  --------------------------------------------------  70

seq1  ATTTCCCTTTTGAATATT  517
                        
seq2  ------------------  70

seq1: chr2_86800397_86801558
seq2: B6Ng01-098B06.g_67_1207

seq1  GAATTCTTTTCAAAAATAAAAGAGGACAAAGGTTTAAGGATCTGAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAAAAATAAAAGAGGACAAAGGTTTAAGGATCTGAATATT  50

seq1  TCTGAAGTATGGATTTCCTTGTTATTTCCAAATATCTGTGTATTCATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTATGGATTTCCTTGTTATTTCCAAATATCTGTGTATTCATTTT  100

seq1  CTTAAAATGGAAAGACAAAGCAAGTCAGCCAAAAGGTATTATTCAGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGGAAAGACAAAGCAAGTCAGCCAAAAGGTATTATTCAGATCT  150

seq1  TGTTGGAGTACAAAGTCCCACAGTAGCTATTAGTCAAATGAGTTCTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGTACAAAGTCCCACAGTAGCTATTAGTCAAATGAGTTCTAGTA  200

seq1  ATGTCTATAAGTCCAAGTAGAGTAGTGTATGCCTTTTTTAACCTAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATAAGTCCAAGTAGAGTAGTGTATGCCTTTTTTAACCTAATAAT  250

seq1  TCTAGACAAACTTGCATAAGGGTGCTGAGCATAATCAAACCTGTGGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACAAACTTGCATAAGGGTGCTGAGCATAATCAAACCTGTGGTCAT  300

seq1  CCTTAGAGACTAATTTCTAAGAAAGATTGGCATGCTATTGAGAACCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGACTAATTTCTAAGAAAGATTGGCATGCTATTGAGAACCAAAG  350

seq1  TTCCAGGAATAATTGAGCCAGAGATTTCCTTTTCTAAGCCCCACAGCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAATAATTGAGCCAGAGATTTCCTTTTCTAAGCCCCACAGCGAA  400

seq1  TAGAATGACCAAATCTTTCCAATGATATAATTACATTGTAGAGTTGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGACCAAATCTTTCCAATGATATAATTACATTGTAGAGTTGTATG  450

seq1  TACACTCATTTTTATTGGTTCAGAAGAGTGGGTATTTTAACAGGTATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCATTTTTATTGGTTCAGAAGAGTGGGTATTTTAACAGGTATTTG  500

seq1  TGTTTATCAGTTATATTCTCAAAATTGCAAAATATTATAAAGTTTTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCAGTTATATTCTCAAAATTGCAAAATATTATAAAGTTTTCAGT  550

seq1  GAGATATAATTTAACTTGAGAAGAATGATTCTATAATAATAAGATGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATAATTTAACTTGAGAAGAATGATTCTATAATAATAAGATGCATG  600

seq1  CATTATAAACAATAAACTATACAAAAAAATCTCAGCTTAGTTATGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAAACAATAAACTATACAAAAAAATCTCAGCTTAGTTATGTTTTA  650

seq1  CACTTTATCTTTAATTTGTTTTGTTTTATTTTATATTTTATTTTTCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATCTTTAATTTGTTTTGTTTTATTTTATATTTTATTTTTCAGTT  700

seq1  CCTTAAACATGACAGATGAGACACAAAATTTAAAATTAGTAACCACTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACATGACAGATGAGACACAAAATTTAAAATTAGTAACCACTACA  750

seq1  AAACATACAGTGGATAGCCCAGGGCAAAGGCAGAGCTCCAGACCCCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACAGTGGATAGCCCAGGGCAAAGGCAGAGCTCCAGACCCCTCCC  800

seq1  ACATCAAGACAGCTTGACTTCCAGGTGCTCTGACACAACCAGGCTCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGACAGCTTGACTTCCAGGTGCTCTGACACAACCAGGCTCATAG  850

seq1  AAGAGACACAGAAACCTGCCCCAGTACTTGATGAGACCCCCATGGGATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACAGAAACCTGCCCCAGTACTTGATGAGACCCCCATGGGATCC  900

seq1  ACCAGAGGTGGACACTATCTGCCCTGCCCAGCAGAGACACATCTTCCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGTGGACACTATCTGCCCTGCCCAGCAGAGACACATCTTCCCTC  950

seq1  TAGCCCACAGTTTGGCCCTGGGCAGAGCCAGTGGTGCACA-CCCCCTCCC  999
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TAGCCCACAGTTTGGCCCTGGGCAGAGCCAGT-GTGCACACCCCCCTCCC  999

seq1  ACAGGCAGAGACAGCTTGTCAGAGAGAAGCTCCTTCACAACCAGGCTCAC  1049
      ||| |||||||||||||||||||||| |||| |||||||||   |||| |
seq2  ACA-GCAGAGACAGCTTGTCAGAGAG-AGCT-CTTCACAAC--AGCTC-C  1043

seq1  AGGAAGAAAAGAATTTAGTCACAGACCAAAAGGCCAGTTAACACTTGAGA  1099
      | ||||||||||||||||||||||||   || ||||| |||| |||||||
seq2  A-GAAGAAAAGAATTTAGTCACAGAC---AAAGCCAG-TAAC-CTTGAGA  1087

seq1  TAAACAGATAGCAATAGGCAAGCATAAACACATAAGCAAGAGAAAACAAT  1149
      ||||| ||||||||   || |||   ||||| ||||||| ||||||| ||
seq2  TAAAC-GATAGCAA---GC-AGC--TAACAC-TAAGCAAAAGAAAAC-AT  1128

seq1  GCTATGTGACTTC  1162
      |||||||||||||
seq2  GCTATGTGACTTC  1141