BAC Information

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BAC

Clone NameB6Ng01-098E03
Chromosome10 (Build37)
Map Location 127,279,608 - 127,485,494
singlet/doubletdoublet
Overlap geneAY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca
Upstream geneXrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16
Downstream genePtges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098E03.bB6Ng01-098E03.g
ACCDH908398DH908399
length1,137908
definitionDH908398|Mus musculus domesticus DNA, BAC clone: B6Ng01-098E03, 5' end.DH908399|Mus musculus domesticus DNA, BAC clone: B6Ng01-098E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,484,334 - 127,485,494)(127,279,608 - 127,280,518)
sequence
gaattcaggtcattatttcaggctttggcaattcaggctttggaatgaag
cctaattgatgggccactcaccataatagcatttacaatatcattactgt
tgtttttcagggctcgaacagcctttgctcttgatacgtttgcttgcgac
atgaccagttctatgtccttaacttccacacccgtctcatcaacctaaaa
gacggagaagagtctcaataaagcaaagtaagaataacttctatagtttt
ctgaagcaagagtcgctgatgcggagagattaagtaaaatcctcaagatt
ccgtggctcacctcctcttcttcactctcctcttggacggttggagtctg
agtgttttcctgaatgtttgaaacagcttcaccttgaactttgaatttct
cagcagctgctaactgtgcttgctgagacaaatcttcaatctacagggca
gaggatagaggtgcgggtagatgtttgtaagtgaaaaatgcatctcagga
aactcaacgctatataaataaaatttttggtatcacaattggggcttaac
ctctgcacagcagcagcaatgaattatctgaccccaaataacattaatac
tggtctggagcaattcacctgaaattttactaaccttggcttccccaaac
actatgtaggtgtctgaagctgggctcttgtagacatcgggttttgtgat
gacaaagaggatatttttagattttcggatagtgactctcgtaacccctg
taacctgtcgaagacccagtttggacatagcctaaagaagagaaatgaac
attaagtttctaactttaggagcagctttaaaagacaaaataaacaacaa
aaacaaacactagagaaacagtcccacattcacatccacagcagactttt
cccgtgtaagaaaagaacaggggctggtgagatggctcagtgggtaagag
cacccgactgctcttcgaaggtccggagttcaaatcccagcaccacatgg
tggctcacatccatccgtaacgagatctgacgcctcttctgggagtgcct
gagacgcttagtgtacttcctaataataaataatcttaaaaaaaaaaaga
ctggggaagtatttcacttttcgtattcattctcttt
gaattctctttggagaatggaaaggccagatatgaaaggagggtggttat
caggtggataaaggtagacttgtggggatgctatgtatttccagctgttg
gcaatgcaactcttccaagggatggaacctggactgccatttggggcagg
gaacaggtagcctgccaatgtgagggagtttgattcaggagttcactctc
tggagacacctgcttgaagaaaggggagaggcgtagtctgagagcttcct
aggacagatgtggagtagatggaggttgactatgcttgtgacgtggaggt
gatttgacaaggaatggaatcctttacgtctgcactacatggagaaaggt
gttactgttactgtgctccgaccagaatgtgtacttttagggcagtgagc
tacacacaccaacacttagtatgacatccaaaagcacagaaatccttcat
ttcctgcacattccagatccaaagggtgtggcctttccttaccacaggct
gttgttctcacgccactgtactaaagactctgaaacccttgacatccttc
tgccttgcaggagggaactctcctattttggggtgaaggtggctataaca
gagcctggcttcttcctgactgatatgactgagagtgaaagattatcatc
aaacatccaggtgctgtgggaccagaccagggagaaatcagggagatcta
tggcgagaaatacctggcatcctgtaagtgagccctgaggaccaaagcga
agtccagccctgacgcttaaccccttgctcatattagtggttctaatgaa
ttgctctttatcctcagagaacagtaatttagatccgtttccttggggtg
gtgggcagtgtgagtatgtggttcttgtctttcgaaactgctgcttgttc
cttcggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127484334_127485494
seq2: B6Ng01-098E03.b_47_1183 (reverse)

seq1  AAAGAGAATTGAAATACTGAAAAGTGAAATTACTT-CCCAGTCTTTTTTT  49
      |||||||||   ||||| ||||||||||| ||||| ||||||||||||||
seq2  AAAGAGAAT--GAATAC-GAAAAGTGAAA-TACTTCCCCAGTCTTTTTTT  46

seq1  TTTTTTTTAAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTC  99
      ||||     |||| |||||||||||  | |||||||||  ||| ||| ||
seq2  TTTT-----AAGA-TTATTTATTATTAGGAAGTACACT-AAGC-GTC-TC  87

seq1  AGACACT-CCAGAAGAGGGCGTCAGATCTCGTTACGGATGGTTGTGAGCC  148
      || |||| |||||||| |||||||||||||||||||||||| ||||||||
seq2  AGGCACTCCCAGAAGA-GGCGTCAGATCTCGTTACGGATGGATGTGAGCC  136

seq1  ACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGG  198
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  ACCATGTGG-TGCTGGGATTTGAACTCCGGACCTTC-GAAGAGCAGTCGG  184

seq1  GTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTGTTCTTTTTCTTAAC  248
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  GTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTGTTC-TTTTCTT-AC  232

seq1  ACGGGAAAAGTCTGCTGTGGATGTTGAATGTGGGACTGTTTCTTCTTATG  298
      ||||||||||||||||||||||| |||||||||||||||||| |||   |
seq2  ACGGGAAAAGTCTGCTGTGGATG-TGAATGTGGGACTGTTTC-TCT--AG  278

seq1  TGTTTGTTTTTTGTTGTTTTATTTTTGTCTTTTTAAAGCTGCTCCTAAAG  348
      |||||| ||||||||||||   ||||||| ||||||||||||||||||||
seq2  TGTTTG-TTTTTGTTGTTT--ATTTTGTC-TTTTAAAGCTGCTCCTAAAG  324

seq1  TTAGAAACTTAATGTTCATTTCTCTTCTTTAGGCTATGTCCAAACTGGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACTTAATGTTCATTTCTCTTCTTTAGGCTATGTCCAAACTGGGT  374

seq1  CTTCGACAGGTTACAGGGGTTACGAGAGTCACTATCCGAAAATCTAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAGGTTACAGGGGTTACGAGAGTCACTATCCGAAAATCTAAAAA  424

seq1  TATCCTCTTTGTCATCACAAAACCCGATGTCTACAAGAGCCCAGCTTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTTTGTCATCACAAAACCCGATGTCTACAAGAGCCCAGCTTCAG  474

seq1  ACACCTACATAGTGTTTGGGGAAGCCAAGGTTAGTAAAATTTCAGGTGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACATAGTGTTTGGGGAAGCCAAGGTTAGTAAAATTTCAGGTGAA  524

seq1  TTGCTCCAGACCAGTATTAATGTTATTTGGGGTCAGATAATTCATTGCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCAGACCAGTATTAATGTTATTTGGGGTCAGATAATTCATTGCTG  574

seq1  CTGCTGTGCAGAGGTTAAGCCCCAATTGTGATACCAAAAATTTTATTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGCAGAGGTTAAGCCCCAATTGTGATACCAAAAATTTTATTTAT  624

seq1  ATAGCGTTGAGTTTCCTGAGATGCATTTTTCACTTACAAACATCTACCCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGTTGAGTTTCCTGAGATGCATTTTTCACTTACAAACATCTACCCG  674

seq1  CACCTCTATCCTCTGCCCTGTAGATTGAAGATTTGTCTCAGCAAGCACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTATCCTCTGCCCTGTAGATTGAAGATTTGTCTCAGCAAGCACAG  724

seq1  TTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTTTCAAACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTTTCAAACAT  774

seq1  TCAGGAAAACACTCAGACTCCAACCGTCCAAGAGGAGAGTGAAGAAGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAACACTCAGACTCCAACCGTCCAAGAGGAGAGTGAAGAAGAGG  824

seq1  AGGTGAGCCACGGAATCTTGAGGATTTTACTTAATCTCTCCGCATCAGCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCCACGGAATCTTGAGGATTTTACTTAATCTCTCCGCATCAGCG  874

seq1  ACTCTTGCTTCAGAAAACTATAGAAGTTATTCTTACTTTGCTTTATTGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCTTCAGAAAACTATAGAAGTTATTCTTACTTTGCTTTATTGAG  924

seq1  ACTCTTCTCCGTCTTTTAGGTTGATGAGACGGGTGTGGAAGTTAAGGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTCCGTCTTTTAGGTTGATGAGACGGGTGTGGAAGTTAAGGACA  974

seq1  TAGAACTGGTCATGTCGCAAGCAAACGTATCAAGAGCAAAGGCTGTTCGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGGTCATGTCGCAAGCAAACGTATCAAGAGCAAAGGCTGTTCGA  1024

seq1  GCCCTGAAAAACAACAGTAATGATATTGTAAATGCTATTATGGTGAGTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAAAACAACAGTAATGATATTGTAAATGCTATTATGGTGAGTGG  1074

seq1  CCCATCAATTAGGCTTCATTCCAAAGCCTGAATTGCCAAAGCCTGAAATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAATTAGGCTTCATTCCAAAGCCTGAATTGCCAAAGCCTGAAATA  1124

seq1  ATGACCTGAATTC  1161
      |||||||||||||
seq2  ATGACCTGAATTC  1137

seq1: chr10_127279608_127280518
seq2: B6Ng01-098E03.g_68_975

seq1  GAATTCTCTTTGGAGAATGGAAAGGCCAGATATGAAAGGAGGGTGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGAGAATGGAAAGGCCAGATATGAAAGGAGGGTGGTTAT  50

seq1  CAGGTGGATAAAGGTAGACTTGTGGGGATGCTATGTATTTCCAGCTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGATAAAGGTAGACTTGTGGGGATGCTATGTATTTCCAGCTGTTG  100

seq1  GCAATGCAACTCTTCCAAGGGATGGAACCTGGACTGCCATTTGGGGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCAACTCTTCCAAGGGATGGAACCTGGACTGCCATTTGGGGCAGG  150

seq1  GAACAGGTAGCCTGCCAATGTGAGGGAGTTTGATTCAGGAGTTCACTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGTAGCCTGCCAATGTGAGGGAGTTTGATTCAGGAGTTCACTCTC  200

seq1  TGGAGACACCTGCTTGAAGAAAGGGGAGAGGCGTAGTCTGAGAGCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACACCTGCTTGAAGAAAGGGGAGAGGCGTAGTCTGAGAGCTTCCT  250

seq1  AGGACAGATGTGGAGTAGATGGAGGTTGACTATGCTTGTGACGTGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGATGTGGAGTAGATGGAGGTTGACTATGCTTGTGACGTGGAGGT  300

seq1  GATTTGACAAGGAATGGAATCCTTTACGTCTGCACTACATGGAGAAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGACAAGGAATGGAATCCTTTACGTCTGCACTACATGGAGAAAGGT  350

seq1  GTTACTGTTACTGTGCTCCGACCAGAATGTGTACTTTTAGGGCAGTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGTTACTGTGCTCCGACCAGAATGTGTACTTTTAGGGCAGTGAGC  400

seq1  TACACACACCAACACTTAGTATGACATCCAAAAGCACAGAAATCCTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACCAACACTTAGTATGACATCCAAAAGCACAGAAATCCTTCAT  450

seq1  TTCCTGCACATTCCAGATCCAAAGGGTGTGGCCTTTCCTTACCACAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCACATTCCAGATCCAAAGGGTGTGGCCTTTCCTTACCACAGGCT  500

seq1  GTTGTTCTCACGCCACTGTACTAAAGACTCTGAAACCCTTGACATCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTCACGCCACTGTACTAAAGACTCTGAAACCCTTGACATCCTTC  550

seq1  TGCCTTGCAGGAGGGAACTCTCCTATTTTGGGGTGAAGGTGGCTATAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCAGGAGGGAACTCTCCTATTTTGGGGTGAAGGTGGCTATAACA  600

seq1  GAGCCTGGCTTCTTCCTGACTGATATGACTGAGAGTGAAAGATTATCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGCTTCTTCCTGACTGATATGACTGAGAGTGAAAGATTATCATC  650

seq1  AAACATCCAGGTGCTGTGGGACCAGACCAGGGAGAAATCAGGGAGATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCAGGTGCTGTGGGACCAGACCAGGGAGAAATCAGGGAGATCTA  700

seq1  TGGCGAGAAATACCTGGCATCCTGTAAGTGAGCCCTGAGGACCAAAGCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAGAAATACCTGGCATCCTGTAAGTGAGCCCTGAGGACCAAAGCGA  750

seq1  AGTCCAGCCCTGAACGCTTAACCCCTTGCTCATATTAGTGGTTCTAATGA  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCCCTG-ACGCTTAACCCCTTGCTCATATTAGTGGTTCTAATGA  799

seq1  ATTGCTCTTTATCCTCAGAGAACAGTAATTTAGATCCGTTTCCTTGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTTATCCTCAGAGAACAGTAATTTAGATCCGTTTCCTTGGGGT  849

seq1  GGTGGGCAGTGTGAGTATGTGGTTCTTGTCTTTCAGAACATGCTGCTTTG  900
      |||||||||||||||||||||||||||||||||| |||  |||||| |||
seq2  GGTGGGCAGTGTGAGTATGTGGTTCTTGTCTTTC-GAAACTGCTGC-TTG  897

seq1  TTCCTTCTGCT  911
      ||||||| |||
seq2  TTCCTTCGGCT  908