BAC Information

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BAC

Clone NameB6Ng01-099M02
Chromosome10 (Build37)
Map Location 61,412,100 - 61,517,562
singlet/doubletdoublet
Overlap geneCol13a1, EG436164
Upstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284
Downstream geneEG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M02.bB6Ng01-099M02.g
ACCDH909462DH909463
length1,180284
definitionDH909462|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M02, 5' end.DH909463|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,412,100 - 61,413,293)(61,517,279 - 61,517,562)
sequence
gaattcaacaaacaaggagagtcacctgggagtctacccacagtgagctg
tccaactgtcccctgtgactctcagacgatccaagacaaaggagtttcaa
caaaaataccatcacagccatcctaacaaactgctgtcaggaacttggcc
catggcctctgtgtgcacagtggggcttcaggaagaagggtagggagatg
gcctctgagtaacatgctgtcatgttgtaactggagggtaaaggaagggg
gtgtctttcttcacaagctaggacctcaaagccctgagcctagccagtta
gcatcagtgaattccaatggaggggccaactggcgcccttactcactagc
acagatcctttcttcgtttcccatagcaacctacagtctgctttctacta
atagctgagatgtagccgagtctcctctccctgacacttcccatgtgcac
agcacagctggtcaggagctgtcagagcagattaatttgtaaaagatgga
agctcagagaggaaatagattttccaggattgagagtcctcatggaactg
agactccaacaagggctcctcacgccacggcaaatgccgtcatcctatcc
ccgagagcagcaggcatctcacatgctttagctctctgatcgtgtcatct
aaatgatctggcctccaaaggtgcagagagggagaaaggagtgagctggc
agccacctgggcagccttggccctattttcccacttaattctgtgataaa
ggtaaccttgcctcactggacaaaggccgtatgctctccttgtggctccg
tgtcaccagaagcttctctgcactcctgtcaccatcatccttaccatcac
gacggtcatcattatcaccatcatcatcatcgacactgccaccattgttg
aaaccaacaatcatttagagtccagtatgtgtcaagctccatgttgacct
cggcaaccccaaagtcctatgctgtcacgatctccctttttcatgaagtt
ctggagatattcactcatagccccaggactaagagatgaatgcagggtgt
tgagtacgagcccaccctcccattgctaccattgccactgcaagtagtac
ttctaagaacagtagtaatcctctgtatgaatggcttgcagagaaaattc
aagccagcccttgcaatctaactactgcat
ttacaacctagcaggccaaggtcagttgccaaggcatccaaaccagtacc
ttaggcttgctttgttaaggctgttctagggtacagaaccctaatgtatg
aatattggcttcttaggtttttgttgttgtttgtttgtttgtttgtttgt
ttgttaaataagaccaggtcaaggttggtagaatatttggagggtgtgca
caatattctggatttgaccccagccagaggtggtaagacatgtatgtatg
tatgtatgtatatgtgtgcaagtatgtgtgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61412100_61413293
seq2: B6Ng01-099M02.b_48_1227

seq1  GAATTCAACAAACAAGGAGAGTCACCTGGGAGTCTACCCACAGTGAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAACAAGGAGAGTCACCTGGGAGTCTACCCACAGTGAGCTG  50

seq1  TCCAACTGTCCCCTGTGACTCTCAGACGATCCAAGACAAAGGAGTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGTCCCCTGTGACTCTCAGACGATCCAAGACAAAGGAGTTTCAA  100

seq1  CAAAAATACCATCACAGCCATCCTAACAAACTGCTGTCAGGAACTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACCATCACAGCCATCCTAACAAACTGCTGTCAGGAACTTGGCC  150

seq1  CATGGCCTCTGTGTGCACAGTGGGGCTTCAGGAAGAAGGGTAGGGAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTCTGTGTGCACAGTGGGGCTTCAGGAAGAAGGGTAGGGAGATG  200

seq1  GCCTCTGAGTAACATGCTGTCATGTTGTAACTGGAGGGTAAAGGAAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGAGTAACATGCTGTCATGTTGTAACTGGAGGGTAAAGGAAGGGG  250

seq1  GTGTCTTTCTTCACAAGCTAGGACCTCAAAGCCCTGAGCCTAGCCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTCTTCACAAGCTAGGACCTCAAAGCCCTGAGCCTAGCCAGTTA  300

seq1  GCATCAGTGAATTCCAATGGAGGGGCCAACTGGCGCCCTTACTCACTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTGAATTCCAATGGAGGGGCCAACTGGCGCCCTTACTCACTAGC  350

seq1  ACAGATCCTTTCTTCGTTTCCCATAGCAACCTACAGTCTGCTTTCTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCTTTCTTCGTTTCCCATAGCAACCTACAGTCTGCTTTCTACTA  400

seq1  ATAGCTGAGATGTAGCCGAGTCTCCTCTCCCTGACACTTCCCATGTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAGATGTAGCCGAGTCTCCTCTCCCTGACACTTCCCATGTGCAC  450

seq1  AGCACAGCTGGTCAGGAGCTGTCAGAGCAGATTAATTTGTAAAAGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTGGTCAGGAGCTGTCAGAGCAGATTAATTTGTAAAAGATGGA  500

seq1  AGCTCAGAGAGGAAATAGATTTTCCAGGATTGAGAGTCCTCATGGAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAGAGGAAATAGATTTTCCAGGATTGAGAGTCCTCATGGAACTG  550

seq1  AGACTCCAACAAGGGCTCCTCACGCCACGGCAAATGCCGTCATCCTATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAACAAGGGCTCCTCACGCCACGGCAAATGCCGTCATCCTATCC  600

seq1  CCGAGAGCAGCAGGCATCTCACATGCTTTAGCTCTCTGATCGTGTCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGCAGCAGGCATCTCACATGCTTTAGCTCTCTGATCGTGTCATCT  650

seq1  AAATGATCTGGCCTCCAAAGGTGCAGAGAGGGAGAAAGGAGTGAGCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCTGGCCTCCAAAGGTGCAGAGAGGGAGAAAGGAGTGAGCTGGC  700

seq1  AGCCACCTGGGCAGCCTTGGCCCTATTTTCCCACTTAATTCTGTGATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGGGCAGCCTTGGCCCTATTTTCCCACTTAATTCTGTGATAAA  750

seq1  GGTAACCTTGCCTCACTGGACAAAGGCCGTATGCTCTCCTTGTGGCTCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCTTGCCTCACTGGACAAAGGCCGTATGCTCTCCTTGTGGCTCCG  800

seq1  TGTCACCAGAAGCTTCTCTGCACTCCTGTCACCATCATCCTTACCATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCAGAAGCTTCTCTGCACTCCTGTCACCATCATCCTTACCATCAC  850

seq1  GACGGTCATCATTATCACCATCATCATCATCGACACTGCCACCATTGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTCATCATTATCACCATCATCATCATCGACACTGCCACCATTGTTG  900

seq1  AAACCAACAATCATTTAGAGTCCAGTATGTGTCAGGCTCCATGTTGACCT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAACCAACAATCATTTAGAGTCCAGTATGTGTCAAGCTCCATGTTGACCT  950

seq1  CGGCAACCCCAAAGTCCTATGCTGTCACGATCTCCCTTTTTCATG-AGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  CGGCAACCCCAAAGTCCTATGCTGTCACGATCTCCCTTTTTCATGAAGTT  1000

seq1  CTGGAGATAATTCACTCATAGCCCCAGGACTAAGAGATTGGAATGCAGGG  1049
      |||||||| |||||||||||||||||||||||||||||  ||||||||||
seq2  CTGGAGAT-ATTCACTCATAGCCCCAGGACTAAGAGAT--GAATGCAGGG  1047

seq1  TGTTGGAGGTACGAGCCCACACTCCCCATTGCTACCCATTGCCACTGCCA  1099
      |||||   |||||||||||| || |||||||||| ||||||||||||| |
seq2  TGTTG--AGTACGAGCCCACCCT-CCCATTGCTA-CCATTGCCACTGCAA  1093

seq1  GGTAAGTAACCTTCTATAGACAGTAGTACATCCTCCTGTATGATGCGCTG  1149
      |   ||||  ||||||   ||||||||| ||||| ||||||||   ||| 
seq2  G--TAGTA--CTTCTAAGAACAGTAGTA-ATCCT-CTGTATGAATGGCTT  1137

seq1  GCCAGAG-ACATTCAAGCAGGCCCTTGCATTCACTAACTACTGCAT  1194
      | ||||| | ||||||||  ||||||||| |  |||||||||||||
seq2  G-CAGAGAAAATTCAAGCCAGCCCTTGCAAT--CTAACTACTGCAT  1180

seq1: chr10_61517279_61517562
seq2: B6Ng01-099M02.g_75_358 (reverse)

seq1  ATAACACACATACTTGCACACATATACATACATACATACATACATGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACACATACTTGCACACATATACATACATACATACATACATGTCTT  50

seq1  ACCACCTCTGGCTGGGGTCAAATCCAGAATATTGTGCACACCCTCCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCTGGCTGGGGTCAAATCCAGAATATTGTGCACACCCTCCAAAT  100

seq1  ATTCTACCAACCTTGACCTGGTCTTATTTAACAAACAAACAAACAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCAACCTTGACCTGGTCTTATTTAACAAACAAACAAACAAACAA  150

seq1  ACAAACAACAACAAAAACCTAAGAAGCCAATATTCATACATTAGGGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAACAACAAAAACCTAAGAAGCCAATATTCATACATTAGGGTTCT  200

seq1  GTACCCTAGAACAGCCTTAACAAAGCAAGCCTAAGGTACTGGTTTGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTAGAACAGCCTTAACAAAGCAAGCCTAAGGTACTGGTTTGGATG  250

seq1  CCTTGGCAACTGACCTTGGCCTGCTAGGTTGTAA  284
      ||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAACTGACCTTGGCCTGCTAGGTTGTAA  284