BAC Information

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BAC

Clone NameB6Ng01-099N01
Chromosome10 (Build37)
Map Location 38,597,582 - 38,712,959
singlet/doubletdoublet
Overlap geneLOC100040915, Lama4
Upstream genenone
Downstream gene1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099N01.bB6Ng01-099N01.g
ACCDH909504DH909505
length5141,004
definitionDH909504|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N01, 5' end.DH909505|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,712,440 - 38,712,959)(38,597,582 - 38,598,587)
sequence
ctccttatgcaaatgaggcatccccaacatgccccgccctggccagtgag
gtatacacactctaatagccactactcaaccctcaaaggtttaaatagcc
tttgttcccttgttaaaataagctgtctccctgaaaccaatctcctgaga
gtctgttctagtgtgctcactcactgcctgagtgagcccccagctgtttc
ctgccttgcctccttactcaggatttatcaatccactggttgtgactggg
gaaggaaactcctccctcttcttccccatccctttttccttcccttctct
ccctcctacactatctctcttaatcagctttctattactctaacaaaaca
tctgagtaacttaaggtaacttaaggacgaaaggctcatggttttagagc
tttcagttcaaggttgcttggtctgcggtcagagtctgaggcagaaggag
gtctgtaactttatagcaaccagagaggcgaggagagggagaggagagga
gaggagaggagagg
gaattccaagaacctggagggcaggttcttatccgaagagaggaagttga
agggagagaggaagttgaatttgtaatctggccactgactacttcagagg
tgaagatggtagaggtagaagtagaggtcgaggtcgtgtgctggagcgag
cacacaggctaagagcagggagagagctctcccaaatcctaccaatccta
ggatgagattttggggtttgggtcacctctgaatctcacatttgcttcag
gccagctcctggaatgaacatctccacagccccacaaccccaaactctcc
aaactcctgccaagttcttcagtccagccactccaggaccatcctaacag
ctagtttcaagccagcccatcacagagctggccccttttactttctgaat
gaaatctccttcttgtctgttttctcctctccaacagcatagtgattgaa
aagcggtcttaagcctagcaggttttaatgagaggtgcggcctggaacaa
attcctgagtcaatgtgctcatctatgccttcaataataagcctgctttt
aaatgtttagctcttagaaattttaaagatcacatgagcttttcttacta
cttgcttagattgacaccacctgggcccttgttaggtatttagaatctca
aggcccttctgggccttagaaccagcatctacatcttactggcttcccaa
gatggtgtatacacatacatgcattacattttaagcagagcactggaagc
gttgaaattcactagacacggggctgtctcttctttaaggctggctttta
tgcacaaactggtttgcttacagtttttaaatccatctatctactatgaa
accagatgaggctgtggcaggatttggaggtgataagacaaataaagtca
ccttcatgcctccctctgatagtcatgatctagaggtgcatagctagtga
attaaaagagctcttgtaagcttacacacatacatgcacatatatacaca
taca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_38712440_38712959
seq2: B6Ng01-099N01.b_45_564 (reverse)

seq1  CCTCTCCTCTCCTCTCCTCTCCTCTCCCTCTCCTCGCCTCTCTGGTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCTCCTCTCCTCTCCTCTCCCTCTCCTCGCCTCTCTGGTTGCT  50

seq1  ATAAAGTTACAGACCTCCTTCTGCCTCAGACTCTGACCGCAGACCAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTACAGACCTCCTTCTGCCTCAGACTCTGACCGCAGACCAAGCA  100

seq1  ACCTTGAACTGAAAGCTCTAAAACCATGAGCCTTTCGTCCTTAAGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAACTGAAAGCTCTAAAACCATGAGCCTTTCGTCCTTAAGTTACC  150

seq1  TTAAGTTACTCAGATGTTTTGTTAGAGTAATAGAAAGCTGATTAAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTACTCAGATGTTTTGTTAGAGTAATAGAAAGCTGATTAAGAGAG  200

seq1  ATAGTGTAGGAGGGAGAGAAGGGAAGGAAAAAGGGATGGGGAAGAAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTAGGAGGGAGAGAAGGGAAGGAAAAAGGGATGGGGAAGAAGAGG  250

seq1  GAGGAGTTTCCTTCCCCAGTCACAACCAGTGGATTGATAAATCCTGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTTCCTTCCCCAGTCACAACCAGTGGATTGATAAATCCTGAGTA  300

seq1  AGGAGGCAAGGCAGGAAACAGCTGGGGGCTCACTCAGGCAGTGAGTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAAGGCAGGAAACAGCTGGGGGCTCACTCAGGCAGTGAGTGAGC  350

seq1  ACACTAGAACAGACTCTCAGGAGATTGGTTTCAGGGAGACAGCTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAACAGACTCTCAGGAGATTGGTTTCAGGGAGACAGCTTATTTT  400

seq1  AACAAGGGAACAAAGGCTATTTAAACCTTTGAGGGTTGAGTAGTGGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGAACAAAGGCTATTTAAACCTTTGAGGGTTGAGTAGTGGCTAT  450

seq1  TAGAGTGTGTATACCTCACTGGCCAGGGCGGGGCATGTTGGGGATGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTGTATACCTCACTGGCCAGGGCGGGGCATGTTGGGGATGCCTC  500

seq1  ATTTGCATAAGGAGGAATTC  520
      ||||||||||||||||||||
seq2  ATTTGCATAAGGAGGAATTC  520

seq1: chr10_38597582_38598587
seq2: B6Ng01-099N01.g_68_1071

seq1  GAATTCCAAGAACCTGGAGGGCAGGTTCTTATCCGAAGAGAGGAAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAACCTGGAGGGCAGGTTCTTATCCGAAGAGAGGAAGTTGA  50

seq1  AGGGAGAGAGGAAGTTGAATTTGTAATCTGGCCACTGACTACTTCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGGAAGTTGAATTTGTAATCTGGCCACTGACTACTTCAGAGG  100

seq1  TGAAGATGGTAGAGGTAGAAGTAGAGGTCGAGGTCGTGTGCTGGAGCGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGGTAGAGGTAGAAGTAGAGGTCGAGGTCGTGTGCTGGAGCGAG  150

seq1  CACACAGGCTAAGAGCAGGGAGAGAGCTCTCCCAAATCCTACCAATCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGCTAAGAGCAGGGAGAGAGCTCTCCCAAATCCTACCAATCCTA  200

seq1  GGATGAGATTTTGGGGTTTGGGTCACCTCTGAATCTCACATTTGCTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGATTTTGGGGTTTGGGTCACCTCTGAATCTCACATTTGCTTCAG  250

seq1  GCCAGCTCCTGGAATGAACATCTCCACAGCCCCACAACCCCAAACTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCCTGGAATGAACATCTCCACAGCCCCACAACCCCAAACTCTCC  300

seq1  AAACTCCTGCCAAGTTCTTCAGTCCAGCCACTCCAGGACCATCCTAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTGCCAAGTTCTTCAGTCCAGCCACTCCAGGACCATCCTAACAG  350

seq1  CTAGTTTCAAGCCAGCCCATCACAGAGCTGGCCCCTTTTACTTTCTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCAAGCCAGCCCATCACAGAGCTGGCCCCTTTTACTTTCTGAAT  400

seq1  GAAATCTCCTTCTTGTCTGTTTTCTCCTCTCCAACAGCATAGTGATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCCTTCTTGTCTGTTTTCTCCTCTCCAACAGCATAGTGATTGAA  450

seq1  AAGCGGTCTTAAGCCTAGCAGGTTTTAATGAGAGGTGCGGCCTGGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGTCTTAAGCCTAGCAGGTTTTAATGAGAGGTGCGGCCTGGAACAA  500

seq1  ATTCCTGAGTCAATGTGCTCATCTATGCCTTCAATAATAAGCCTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAGTCAATGTGCTCATCTATGCCTTCAATAATAAGCCTGCTTTT  550

seq1  AAATGTTTAGCTCTTAGAAATTTTAAAGATCACATGAGCTTTTCTTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTAGCTCTTAGAAATTTTAAAGATCACATGAGCTTTTCTTACTA  600

seq1  CTTGCTTAGATTGACACCACCTGGGCCCTTGTTAGGTATTTAGAATCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTAGATTGACACCACCTGGGCCCTTGTTAGGTATTTAGAATCTCA  650

seq1  AGGCCCTTCTGGGCCTTAGAACCAGCATCTACATCTTACTGGCTTCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTCTGGGCCTTAGAACCAGCATCTACATCTTACTGGCTTCCCAA  700

seq1  GATGGTGTATACACATACATGCATTACATTTTAAGCAGAGCACTGGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGTATACACATACATGCATTACATTTTAAGCAGAGCACTGGAAGC  750

seq1  GTTGAAATTCACTAGACACGGGGCTGTCTCTTCTTTAAGGCTGGCTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATTCACTAGACACGGGGCTGTCTCTTCTTTAAGGCTGGCTTTTA  800

seq1  TGCACAAACTGGTTTGCTTACAGTTTTTAAATCCATCTATCTACTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAACTGGTTTGCTTACAGTTTTTAAATCCATCTATCTACTATGAA  850

seq1  ACCAGATGAGGCTGTGGCAGGA-TTGGAGGTGATTAAGACAAATAAAGTC  899
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  ACCAGATGAGGCTGTGGCAGGATTTGGAGGTGA-TAAGACAAATAAAGTC  899

seq1  ACCTTCATGCCTCCCTCTGATAGTCATGATCCTAGAGGTGCATAGCTAGT  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCTTCATGCCTCCCTCTGATAGTCATGAT-CTAGAGGTGCATAGCTAGT  948

seq1  GAATTAAAAGAGCTCTTGTAAAGCTTACACACATACATGCACATATATAC  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTAAAAGAGCTCTTGT-AAGCTTACACACATACATGCACATATATAC  997

seq1  ACATACA  1006
      |||||||
seq2  ACATACA  1004