BAC Information

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BAC

Clone NameB6Ng01-100G05
Chromosome10 (Build37)
Map Location 18,358,160 - 18,485,696
singlet/doubletdoublet
Overlap geneD10Bwg1379e
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729
Downstream geneEG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100G05.bB6Ng01-100G05.g
ACCDH909904DH909905
length843940
definitionDH909904|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G05, 5' end.DH909905|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,358,160 - 18,359,008)(18,485,126 - 18,485,696)
sequence
gaattccttcctcagagatgcccctcatctgatatataaaaattttttat
aagaactggaaatgcagatctgcaactgcaacatttatccctaactgcga
agtttaatgtgctagtaagaaggtagggacccaaaagctttcgaggttgg
aaagaactggagttcaccagcttatgtaagtatgaatgccatctaggtat
atcctccttaggccacactcagtgaggaacagcctggttgcagagcactg
tcagaacactgcagcccgtccagaccatactgagagcactttgtgaccat
gcacacaagacctattattttattcctgccatgtcctctccaactcctca
ataactccctgtttgattactactgttgcacacaaacacacacactcgat
gctgaaagggaaagaggccgtggttggatctgctggcatggaaagtcatg
ccactgctagaggtgcaacaaagctcaaagacactgctgggaggtctgct
tatgactgaaataatttgttggatttgttaacaatgttttccagcagtgc
cctgctatctatgtgcaggttaatttttacaataataaataaccaacaaa
cttgagtataagacaaaatgaaaactattctgtatacataataaaggaac
cattttcctgatataccagatatattttctgctgatatcagtcaaaacca
acaacaataaacacacactgtacttcacaaaatactgtctatcatgtaca
accattttcttcctatacattattttgtttgattcttttctttctttttt
ttattttttttgtttttttttttttttcttttcaaaccaagga
gaattcctgtcttggtattttgtcatagcaaccgaaaacaaatgaagctc
cagatggggaacaaaataaaggttgatcagggaaggaagctcacgtgtgc
tacagtgtttggacccagattgatcacctaagggcctacaagtctagaat
acatggatgggaggaaaatacgtgctcagtagaagggcagatgccaaaaa
aaatagacactcagagtgttgagtctgaacagatgcttttcctaaatgta
gcaaccatttaagtcattattttgctgtgtggagaaggaagggattagag
gaaaatgtgtgggtattttaaactagcaacatggctgctctggcaaggga
tcatagccagagacctaggtctgagtgatccagctagagtaaagacatgc
cacacacctttaatccctctatctgaaatacagacatgcccttagtacat
atctttaaggtaaaagtagcttgtagaaggaagcagccatgtttgagagt
gatgtctcattgaaagacagacaaagtaagaaatcaggggaaactctgac
agaatgagtctgagataggattcacccaattctcatgagaacagcacagg
caggagaagccatgtaagctctgctccgggagagagtgggtctgctctgt
tcagccagtcgagttcagtacagttgagatgaggcagtcggtagggagtc
agtgcagtgaggacagagcagtggaactgagttcctttgtgagttcatgc
attgcagtgcaggtcagcagaggcagctgaagccagagcataattaggag
ccagaagatagaacaaatcgccagagcttgtttaagaccaagcagagcaa
tttagtgagaagctgagaagactccagattgaagcagccatcttggaaag
gactttgagccagaacaagttgagttgaaccagccagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18358160_18359008
seq2: B6Ng01-100G05.b_46_888

seq1  GAATTCCTTCCTCAGAGATGCCCCTCATCTGATATATAAAAATTTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTCAGAGATGCCCCTCATCTGATATATAAAAATTTTTTAT  50

seq1  AAGAACTGGAAATGCAGATCTGCAACTGCAACATTTATCCCTAACTGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGGAAATGCAGATCTGCAACTGCAACATTTATCCCTAACTGCGA  100

seq1  AGTTTAATGTGCTAGTAAGAAGGTAGGGACCCAAAAGCTTTCGAGGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATGTGCTAGTAAGAAGGTAGGGACCCAAAAGCTTTCGAGGTTGG  150

seq1  AAAGAACTGGAGTTCACCAGCTTATGTAAGTATGAATGCCATCTAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTGGAGTTCACCAGCTTATGTAAGTATGAATGCCATCTAGGTAT  200

seq1  ATCCTCCTTAGGCCACACTCAGTGAGGAACAGCCTGGTTGCAGAGCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTAGGCCACACTCAGTGAGGAACAGCCTGGTTGCAGAGCACTG  250

seq1  TCAGAACACTGCAGCCCGTCCAGACCATACTGAGAGCACTTTGTGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACACTGCAGCCCGTCCAGACCATACTGAGAGCACTTTGTGACCAT  300

seq1  GCACACAAGACCTATTATTTTATTCCTGCCATGTCCTCTCCAACTCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAAGACCTATTATTTTATTCCTGCCATGTCCTCTCCAACTCCTCA  350

seq1  ATAACTCCCTGTTTGATTACTACTGTTGCACACAAACACACACACTCGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCCCTGTTTGATTACTACTGTTGCACACAAACACACACACTCGAT  400

seq1  GCTGAAAGGGAAAGAGGCCGTGGTTGGATCTGCTGGCATGGAAAGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGGGAAAGAGGCCGTGGTTGGATCTGCTGGCATGGAAAGTCATG  450

seq1  CCACTGCTAGAGGTGCAACAAAGCTCAAAGACACTGCTGGGAGGTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTAGAGGTGCAACAAAGCTCAAAGACACTGCTGGGAGGTCTGCT  500

seq1  TATGACTGAAATAATTTGTTGGATTTGTTAACAATGTTTTCCAGCAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGAAATAATTTGTTGGATTTGTTAACAATGTTTTCCAGCAGTGC  550

seq1  CCTGCTATCTATGTGCAGGTTAATTTTTACAATAATAAATAACCAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATCTATGTGCAGGTTAATTTTTACAATAATAAATAACCAACAAA  600

seq1  CTTGAGTATAAGACAAAATGAAAACTATTCTGTATACATAATAAAGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTATAAGACAAAATGAAAACTATTCTGTATACATAATAAAGGAAC  650

seq1  CATTTTCCTGATATACCAGATATATTTTCTGCTGATATCAGTCAAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTGATATACCAGATATATTTTCTGCTGATATCAGTCAAAACCA  700

seq1  ACAACAATAAACACACACTGTACTTCACAAAATACTGTCTATCATGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATAAACACACACTGTACTTCACAAAATACTGTCTATCATGTACA  750

seq1  ACCATTTTCTTCCTATACATTATTTTGTTTGATTCTTTTCTTTCTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||      
seq2  ACCATTTTCTTCCTATACATTATTTTGTTTGATTCTTTTCTTTC------  794

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAGGA  849
      |||||||| |||||||| ||||||||||||||| ||||   ||||||||
seq2  TTTTTTTTATTTTTTTTGTTTTTTTTTTTTTTTCTTTTCAAACCAAGGA  843

seq1: chr10_18485126_18485696
seq2: B6Ng01-100G05.g_72_642 (reverse)

seq1  ATCCTATCTCAGACTCATTCTGTCAGAGTTTCCCCTGATTTCTTACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCTCAGACTCATTCTGTCAGAGTTTCCCCTGATTTCTTACTTTG  50

seq1  TCTGTCTTTCAATGAGACATCACTCTCAAACATGGCTGCTTCCTTCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTCAATGAGACATCACTCTCAAACATGGCTGCTTCCTTCTACA  100

seq1  AGCTACTTTTACCTTAAAGATATGTACTAAGGGCATGTCTGTATTTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTTTACCTTAAAGATATGTACTAAGGGCATGTCTGTATTTCAGA  150

seq1  TAGAGGGATTAAAGGTGTGTGGCATGTCTTTACTCTAGCTGGATCACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGATTAAAGGTGTGTGGCATGTCTTTACTCTAGCTGGATCACTCA  200

seq1  GACCTAGGTCTCTGGCTATGATCCCTTGCCAGAGCAGCCATGTTGCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGGTCTCTGGCTATGATCCCTTGCCAGAGCAGCCATGTTGCTAGT  250

seq1  TTAAAATACCCACACATTTTCCTCTAATCCCTTCCTTCTCCACACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACCCACACATTTTCCTCTAATCCCTTCCTTCTCCACACAGCAA  300

seq1  AATAATGACTTAAATGGTTGCTACATTTAGGAAAAGCATCTGTTCAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGACTTAAATGGTTGCTACATTTAGGAAAAGCATCTGTTCAGACT  350

seq1  CAACACTCTGAGTGTCTATTTTTTTTGGCATCTGCCCTTCTACTGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCTGAGTGTCTATTTTTTTTGGCATCTGCCCTTCTACTGAGCAC  400

seq1  GTATTTTCCTCCCATCCATGTATTCTAGACTTGTAGGCCCTTAGGTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCCTCCCATCCATGTATTCTAGACTTGTAGGCCCTTAGGTGATC  450

seq1  AATCTGGGTCCAAACACTGTAGCACACGTGAGCTTCCTTCCCTGATCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGTCCAAACACTGTAGCACACGTGAGCTTCCTTCCCTGATCAAC  500

seq1  CTTTATTTTGTTCCCCATCTGGAGCTTCATTTGTTTTCGGTTGCTATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTGTTCCCCATCTGGAGCTTCATTTGTTTTCGGTTGCTATGAC  550

seq1  AAAATACCAAGACAGGAATTC  571
      |||||||||||||||||||||
seq2  AAAATACCAAGACAGGAATTC  571