BAC Information

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BAC

Clone NameB6Ng01-100L16
Chromosome10 (Build37)
Map Location 114,175,390 - 114,290,880
singlet/doubletdoublet
Overlap geneTrhde, 4930473D10Rik
Upstream genenone
Downstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100L16.bB6Ng01-100L16.g
ACCDH910139DH910140
length9621,163
definitionDH910139|Mus musculus domesticus DNA, BAC clone: B6Ng01-100L16, 5' end.DH910140|Mus musculus domesticus DNA, BAC clone: B6Ng01-100L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,175,390 - 114,176,385)(114,289,706 - 114,290,880)
sequence
gaattcagccccaagagagaacatgaaggaaatgctatacggttggcaag
cttctcaagaatatgcactctaggcctcaagtgggagtggatttggaaaa
taacactgttcttgtccctgttctgtcgtgaagggtagaattgaacccta
tagctactccttaaatcatttttactgaagaaaaattctggcaagaaagg
aaaaatctacaaatgagtaaagtgtcaaagatggcaattacaatgatgaa
tgatttgctgaacaatgtgttacacggagatttggactcttgtgagcaca
gttacgttattactttatgcagtcccctttgaaatgcaatcctggtagtg
gaaaccacacctgctcttctctctccactttcaaaagatttttaaaatga
gagtaattgggaaggccattcagaagactctgagtaaagctgaaatgata
tccattctgttaggtagagaaagtcaaaaggatgactcaaaacagctgga
ccataaaacatcacttctcctcatgtaatgtcacttaaatttgaattatc
tagtgcaataatgcctttttggcgggaaaaaaacccctctgtttctttag
caacaagattttcagtgggatgtctgtctacccatagaagaaaatatagt
acaagatgatcaaggctcaaatagattatccctacattatccttagggaa
catgttttatatctgtagtgattcttaaagccacagaagtagaatcctcg
tacatataccatttttacacaatagcaatgataaagtagcttataatcag
gcacataaagagtaacaaaagtacctttcataagcctcttaatatttcat
gggattatttttcttatgaagccaggaattctcgttttattagtaatgga
ttcctacttagatacgcaggttcttaattaactctactttgcattctgga
tcatatagtaaa
gaattctgtgtcccatgaattcagacttgcaatacagcttcagataggct
tgaacttctaattttcctgtctccacctccaaagtgctgggattacaggc
agtcattaccttgcctgggttttgatgagagttctcttagacaaggaggg
tctcttgtaggtgacttattatattcccagccagatttaatggtagttca
tgaagccatttttaaaagcttcttctgtctcctatctcaccaaaccagac
agcagattttcttagagtccggacaatgtatgaaattagaacgtacaaga
aagccagactataatggtctgtaggtggttacttctgtcagtattataca
ttttcttgagctgtaagcttctggaaagtatggatttggccatgccttta
gtaaacacactgtttgcaagggagtatggctacttctgtaaaacagttgg
ttactcatgctaggccacatagggatatgaagaaaggtgtcagcatccca
gacaaagcaaagagaaagcaagggtaaacattttgtgttaatttctacaa
gagaccagacaggtataaatgtagatgagtaggctctgaatgggattttg
tgaattaagtcagcaggttgtcagatcacagaggtggatccccctagccc
attagtggctctgggataaagagagctaagaaaagcttttcaggtagaag
aactcagttttgagtgcatccagggctatggcgcttcatttgcatataaa
aagtgagtgctttgcttttctaagacctggttagacctgggagggaccag
ccctttctagtcagtgaggtctctacaacaaagtgccagaaatatagaaa
ctgggctgtgaaaaatgaagaagaactgagccttggatctgatttagatt
gacatttcaggcaggctcagatctttgggctgcatcccttcccaaactac
tatttccaaatgtgttccctggctttctcccttagtccttttgtgcttta
aatcactaatacacaaacactgcactctttgccacccaagtatcttctta
aggtgaatccttcctccagagtcctgctgaacctgcttcttttctggaac
attgctctaactcaacatatggcccatttctcgttcttgacgttttcatg
agaagtatttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114175390_114176385
seq2: B6Ng01-100L16.b_47_1008

seq1  GAATTCAGCCCCAAGAGAGAACATGAAGGAAATGCTATACGGTTGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCCAAGAGAGAACATGAAGGAAATGCTATACGGTTGGCAAG  50

seq1  CTTCTCAAGAATATGCACTCTAGGCCTCAAGTGGGAGTGGATTTGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAGAATATGCACTCTAGGCCTCAAGTGGGAGTGGATTTGGAAAA  100

seq1  TAACACTGTTCTTGTCCCTGTTCTGTCGTGAAGGGTAGAATTGAACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGTTCTTGTCCCTGTTCTGTCGTGAAGGGTAGAATTGAACCCTA  150

seq1  TAGCTACTCCTTAAATCATTTTTACTGAAGAAAAATTCTGGCAAGAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTCCTTAAATCATTTTTACTGAAGAAAAATTCTGGCAAGAAAGG  200

seq1  AAAAATCTACAAATGAGTAAAGTGTCAAAGATGGCAATTACAATGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTACAAATGAGTAAAGTGTCAAAGATGGCAATTACAATGATGAA  250

seq1  TGATTTGCTGAACAATGTGTTACACGGAGATTTGGACTCTTGTGAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCTGAACAATGTGTTACACGGAGATTTGGACTCTTGTGAGCACA  300

seq1  GTTACGTTATTACTTTATGCAGTCCCCTTTGAAATGCAATCCTGGTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGTTATTACTTTATGCAGTCCCCTTTGAAATGCAATCCTGGTAGTG  350

seq1  GAAACCACACCTGCTCTTCTCTCTCCACTTTCAAAAGATTTTTAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACACCTGCTCTTCTCTCTCCACTTTCAAAAGATTTTTAAAATGA  400

seq1  GAGTAATTGGGAAGGCCATTCAGAAGACTCTGAGTAAAGCTGAAATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTGGGAAGGCCATTCAGAAGACTCTGAGTAAAGCTGAAATGATA  450

seq1  TCCATTCTGTTAGGTAGAGAAAGTCAAAAGGATGACTCAAAACAGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTGTTAGGTAGAGAAAGTCAAAAGGATGACTCAAAACAGCTGGA  500

seq1  CCATAAAACATCACTTCTCCTCATGTAATGTCACTTAAATTTGAATTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAACATCACTTCTCCTCATGTAATGTCACTTAAATTTGAATTATC  550

seq1  TAGTGCAATAATGCCTTTTTGGCGGGAAAAAAACCCCTCTGTTTCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAATAATGCCTTTTTGGCGGGAAAAAAACCCCTCTGTTTCTTTAG  600

seq1  CAACAAGATTTTCAGTGGGATGTCTGTCTACCCATAGAAGAAAATATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGATTTTCAGTGGGATGTCTGTCTACCCATAGAAGAAAATATAGT  650

seq1  ACAAGATGATCAAGGCTCAAATAGATTATCCCTACATTATCCTTAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGATCAAGGCTCAAATAGATTATCCCTACATTATCCTTAGGGAA  700

seq1  CATGTTTTAATATCTGTAGTGATTCTTAAAGCCACAGAAGTAGAATCCTC  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTT-ATATCTGTAGTGATTCTTAAAGCCACAGAAGTAGAATCCTC  749

seq1  GTACATATACCATTTTTACACAATAGCAATGATAAAGTTAGCTTATAAAT  800
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GTACATATACCATTTTTACACAATAGCAATGATAAAG-TAGCTTAT-AAT  797

seq1  CAAGCACAATAAAGAGTAACAAAAGTAACTTTC-TATAGCTCTTAATAAT  849
      || |||| ||||||||||||||||||| ||||| ||   |||||||| ||
seq2  CAGGCAC-ATAAAGAGTAACAAAAGTACCTTTCATAAGCCTCTTAAT-AT  845

seq1  TTCAATGAGATTATTTTTCTTATGAAGCCAGGAATTTTCTTCCTTTTTTT  899
      ||| ||| |||||||||||||||||||||||||||| ||           
seq2  TTC-ATGGGATTATTTTTCTTATGAAGCCAGGAATTCTC-----------  883

seq1  ATTTTTATTTTTATTTTGGATTTCCTTAACTTTAGATAATCTGCAAGTTC  949
        |||||||  ||   |||| |||||  || |||||||    ||| ||||
seq2  -GTTTTATTAGTA--ATGGA-TTCCT--AC-TTAGATA---CGCAGGTTC  923

seq1  TCTTTAATATACTCTACTCTTGCATTCTGGAGTCATTATTAAGTAAA  996
         |||||  |||||||| |||||||||||| ||| |||  ||||||
seq2  ---TTAATTAACTCTACT-TTGCATTCTGGA-TCA-TAT--AGTAAA  962

seq1: chr10_114289706_114290880
seq2: B6Ng01-100L16.g_69_1231 (reverse)

seq1  TCCAAATATACTTCATGAAAACAGTCAAAGAAAACGAGAAATGTGACAAA  50
      ||||||||    |||||||||| ||||   | ||||||||||| | || |
seq2  TCCAAATACTTCTCATGAAAAC-GTCA---AGAACGAGAAATGGGCCATA  46

seq1  TGTTGAGTTAGGAAGCAATGTTCAAGAAAAGGAAGCAGTGTCAGCAGGAC  100
      |||||||||||  |||||||||| |||||| |||||||  ||||||||||
seq2  TGTTGAGTTAG--AGCAATGTTCCAGAAAA-GAAGCAGGTTCAGCAGGAC  93

seq1  TCTGTGGGGAGGATTCAACTTTAAGAAGGATAC-TGGGTGGCAAGGAGTG  149
      ||||  || ||||||| || ||||||| ||||| |||||||||| |||||
seq2  TCTGGAGGAAGGATTC-ACCTTAAGAA-GATACTTGGGTGGCAAAGAGTG  141

seq1  CAGTGGTTTGTTGTAATTAGTGATTTAAAGCACAAAAGGACTAAGGGAGA  199
      |||| ||||| ||| |||||||||||||||||||||||||||||||||||
seq2  CAGT-GTTTG-TGT-ATTAGTGATTTAAAGCACAAAAGGACTAAGGGAGA  188

seq1  AAGCCAGGGAACACATCTGGAAATAGTAGTTTGGGAAGGGAATGCAG-CC  248
      |||||||||||||||| ||||||||||||||||||||||| |||||| ||
seq2  AAGCCAGGGAACACATTTGGAAATAGTAGTTTGGGAAGGG-ATGCAGCCC  237

seq1  AAAGATCTGAGCCTGCCTGAAATGTCAATTCTAAATCAGATCCAAGGCTC  298
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAGATCTGAGCCTGCCTGAAATGTCAA-TCTAAATCAGATCCAAGGCTC  286

seq1  AGTTCTTCTTCATTTCTCACAGCCCAGTTTCTATATTTCTGGCACTTTGT  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCTTCATTTTTCACAGCCCAGTTTCTATATTTCTGGCACTTTGT  336

seq1  TGTAGAGACCTCACTGACTAGAAAGGGCTGGTCCCTCCCAGGTCTAACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGACCTCACTGACTAGAAAGGGCTGGTCCCTCCCAGGTCTAACCA  386

seq1  GGTCTTAGAAAAGCAAAGCACTCACTTTTTATATGCAAATGAAGCGCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAGAAAAGCAAAGCACTCACTTTTTATATGCAAATGAAGCGCCAT  436

seq1  AGCCCTGGATGCACTCAAAACTGAGTTCTTCTACCTGAAAAGCTTTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGATGCACTCAAAACTGAGTTCTTCTACCTGAAAAGCTTTTCTT  486

seq1  AGCTCTCTTTATCCCAGAGCCACTAATGGGCTAGGGGGATCCACCTCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTTTATCCCAGAGCCACTAATGGGCTAGGGGGATCCACCTCTGT  536

seq1  GATCTGACAACCTGCTGACTTAATTCACAAAATCCCATTCAGAGCCTACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACAACCTGCTGACTTAATTCACAAAATCCCATTCAGAGCCTACT  586

seq1  CATCTACATTTATACCTGTCTGGTCTCTTGTAGAAATTAACACAAAATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATTTATACCTGTCTGGTCTCTTGTAGAAATTAACACAAAATGT  636

seq1  TTACCCTTGCTTTCTCTTTGCTTTGTCTGGGATGCTGACACCTTTCTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTGCTTTCTCTTTGCTTTGTCTGGGATGCTGACACCTTTCTTCA  686

seq1  TATCCCTATGTGGCCTAGCATGAGTAACCAACTGTTTTACAGAAGTAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTATGTGGCCTAGCATGAGTAACCAACTGTTTTACAGAAGTAGCC  736

seq1  ATACTCCCTTGCAAACAGTGTGTTTACTAAAGGCATGGCCAAATCCATAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCTTGCAAACAGTGTGTTTACTAAAGGCATGGCCAAATCCATAC  786

seq1  TTTCCAGAAGCTTACAGCTCAAGAAAATGTATAATACTGACAGAAGTAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAGCTTACAGCTCAAGAAAATGTATAATACTGACAGAAGTAAC  836

seq1  CACCTACAGACCATTATAGTCTGGCTTTCTTGTACGTTCTAATTTCATAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACAGACCATTATAGTCTGGCTTTCTTGTACGTTCTAATTTCATAC  886

seq1  ATTGTCCGGACTCTAAGAAAATCTGCTGTCTGGTTTGGTGAGATAGGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCGGACTCTAAGAAAATCTGCTGTCTGGTTTGGTGAGATAGGAGA  936

seq1  CAGAAGAAGCTTTTAAAAATGGCTTCATGAACTACCATTAAATCTGGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAGCTTTTAAAAATGGCTTCATGAACTACCATTAAATCTGGCTG  986

seq1  GGAATATAATAAGTCACCTACAAGAGACCCTCCTTGTCTAAGAGAACTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATAATAAGTCACCTACAAGAGACCCTCCTTGTCTAAGAGAACTCT  1036

seq1  CATCAAAACCCAGGCAAGGTAATGACTGCCTGTAATCCCAGCACTTTGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAACCCAGGCAAGGTAATGACTGCCTGTAATCCCAGCACTTTGGA  1086

seq1  GGTGGAGACAGGAAAATTAGAAGTTCAAGCCTATCTGAAGCTGTATTGCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGACAGGAAAATTAGAAGTTCAAGCCTATCTGAAGCTGTATTGCA  1136

seq1  AGTCTGAATTCATGGGACACAGAATTC  1175
      |||||||||||||||||||||||||||
seq2  AGTCTGAATTCATGGGACACAGAATTC  1163