BAC Information

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BAC

Clone NameB6Ng01-101C02
Chromosome10 (Build37)
Map Location 126,838,407 - 126,982,030
singlet/doubletdoublet
Overlap geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc
Downstream geneLOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101C02.bB6Ng01-101C02.g
ACCDH910416DH910417
length679615
definitionDH910416|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C02, 5' end.DH910417|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,838,407 - 126,839,082)(126,981,418 - 126,982,030)
sequence
gaattctcttattcttttaaatttttatcgcatgtatttgtgtgtgtgta
ggtacatacatgtgtgaaagtgcatgagtgtggaggtcagagaccagctt
gcaggcgtgcataagttgcctgtggtttctgtggcaggagctcaggtggt
caggacagtgggtaccgtagacttggatgtgccagcatcccagcagtctg
ctgggtttccctctaaggagtttcctcgcttaggtcccccatgctgtgcg
tggaaggaacagagagagggtcttgcagtgttggtctagggtgttgttcc
ttagcactacttggggaagacatggttccatgttgagtgactttactgtc
cttgtcaaaaacacattgccatagatgtttgggtttttgtttctttgctt
tcattttttgattcttgtttctattggtcttttttaacaaaagcagatcg
gtttttttcaagacagggtttctctgtgtagccctggctgtcctggaact
cactctgtagaccaggctggtccaaaactcagaaatccgcctgcctctgc
ctcccaagtgctgggattaaaggcgtgcaccaatcaccacccagtcaaaa
acagatattaatatttcaaaaatttttgtatatatatgttttttgtctct
gtgtggttatgtgtacatgagtgctgatt
gaattcttggaactatcaggaagcaggtaagagaagaacagatttctgaa
gggtctggtcagtctggatcagcttggggcacaggttagagcccttggat
ctgccattggctccacccacaccggaaacatccccttctgtctaaaacaa
atggtctggttagatcggaggctactgtagtgtgacagggtcttggtcaa
atgtgtcccagggatggaactcgggccctgggttctcacctctacctttc
aagcccatctgataggtggtctctctcactccggcaggctccgagtacca
ggtgctatacatcgcggatgacaacgagatccgcagcttgttcccgggcc
acccccactcagcctacgagcagacattccagggcgatgagagtgtccgc
atagatgccatggatgtccatgtcaaggccggccgtgtctactggactaa
ctggcacacgggcacaatctcctacaggagcctgccccctgccgcccctc
ctaccacttccaaccgccaccggaggcagatcgaccggggtgtcacccac
ctcaatgtaagcatcctgcctgttcagagtttggggtggaagagctccgc
aggacatattgtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126838407_126839082
seq2: B6Ng01-101C02.b_46_724

seq1  GAATTCTCTTATTCTTTTAAATTTTTAT-GCATGTATTTGTGTGTGTGTA  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTCTTATTCTTTTAAATTTTTATCGCATGTATTTGTGTGTGTGTA  50

seq1  GGTACATACATGTGTGAAAGTGCATGAGTGTGGAGGTCAGAGACCAGCTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATACATGTGTGAAAGTGCATGAGTGTGGAGGTCAGAGACCAGCTT  100

seq1  GCAGGCGTGCATAAGTTGCCTGTGGTTTCTGTGGCAGGAGCTCAGGTGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGTGCATAAGTTGCCTGTGGTTTCTGTGGCAGGAGCTCAGGTGGT  150

seq1  CAGGACAGTGGGTACCGTAGACTTGGATGTGCCAGCATCCCAGCAGTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGTGGGTACCGTAGACTTGGATGTGCCAGCATCCCAGCAGTCTG  200

seq1  CTGGGTTTCCCTCTAAGGAGTTTCCTCGCTTAGGTCCCCCATGCTGTGCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTCCCTCTAAGGAGTTTCCTCGCTTAGGTCCCCCATGCTGTGCG  250

seq1  TGGAAGGAACAGAGAGAGGGTCTTGCAGTGTTGGTCTAGGGTGTTGTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAACAGAGAGAGGGTCTTGCAGTGTTGGTCTAGGGTGTTGTTCC  300

seq1  TTAGCACTACTTGGGGAAGACATGGTTCCATGTTGAGTGACTTTACTGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTACTTGGGGAAGACATGGTTCCATGTTGAGTGACTTTACTGTC  350

seq1  CTTGTCAAAAACACATTGCCATAGATGTTTGGGTTTTTGTTTCTTTGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAAAAACACATTGCCATAGATGTTTGGGTTTTTGTTTCTTTGCTT  400

seq1  TCATTTTTTGATTCTTGTTTCTATTGGTCTTTTTTAACAAAAGCAGATCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTGATTCTTGTTTCTATTGGTCTTTTTTAACAAAAGCAGATCG  450

seq1  GTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  500

seq1  CACTCTGTAGACCAGGCTGGTCCAAAACTCAGAAATCCGCCTGCCTCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAGACCAGGCTGGTCCAAAACTCAGAAATCCGCCTGCCTCTGC  550

seq1  CTCCCAAGTGCTGGGATTAAAGGCGTGCACC-ATCACCACCCAGTCAAAA  598
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCCCAAGTGCTGGGATTAAAGGCGTGCACCAATCACCACCCAGTCAAAA  600

seq1  ACAGATATTAATATTTCAAAAATTTTTGTATATATATG-TTTGTGTCTCT  647
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  ACAGATATTAATATTTCAAAAATTTTTGTATATATATGTTTTTTGTCTCT  650

seq1  GTGTGGTTATGTGTACATGAGTGCAGATT  676
      |||||||||||||||||||||||| ||||
seq2  GTGTGGTTATGTGTACATGAGTGCTGATT  679

seq1: chr10_126981418_126982030
seq2: B6Ng01-101C02.g_70_684 (reverse)

seq1  CCTACACTCTGTCCTGCGGAGCTCTTCCACCCC-ATCTCTG-ACAGGCTG  48
      |||||| | |||||||||||||||||||||||| | ||||| |||||| |
seq2  CCTACAATATGTCCTGCGGAGCTCTTCCACCCCAAACTCTGAACAGGCAG  50

seq1  GATGCTTACATTGAGGTGGGTGACACCCCGGTCGATCTGCCTCCGGTGGC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTACATTGAGGTGGGTGACACCCCGGTCGATCTGCCTCCGGTGGC  100

seq1  GGTTGGAAGTGGTAGGAGGGGCGGCAGGGGGCAGGCTCCTGTAGGAGATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAAGTGGTAGGAGGGGCGGCAGGGGGCAGGCTCCTGTAGGAGATT  150

seq1  GTGCCCGTGTGCCAGTTAGTCCAGTAGACACGGCCGGCCTTGACATGGAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGTGTGCCAGTTAGTCCAGTAGACACGGCCGGCCTTGACATGGAC  200

seq1  ATCCATGGCATCTATGCGGACACTCTCATCGCCCTGGAATGTCTGCTCGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGCATCTATGCGGACACTCTCATCGCCCTGGAATGTCTGCTCGT  250

seq1  AGGCTGAGTGGGGGTGGCCCGGGAACAAGCTGCGGATCTCGTTGTCATCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGTGGGGGTGGCCCGGGAACAAGCTGCGGATCTCGTTGTCATCC  300

seq1  GCGATGTATAGCACCTGGTACTCGGAGCCTGCCGGAGTGAGAGAGACCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGTATAGCACCTGGTACTCGGAGCCTGCCGGAGTGAGAGAGACCAC  350

seq1  CTATCAGATGGGCTTGAAAGGTAGAGGTGAGAACCCAGGGCCCGAGTTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATGGGCTTGAAAGGTAGAGGTGAGAACCCAGGGCCCGAGTTCC  400

seq1  ATCCCTGGGACACATTTGACCAAGACCCTGTCACACTACAGTAGCCTCCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGGACACATTTGACCAAGACCCTGTCACACTACAGTAGCCTCCG  450

seq1  ATCTAACCAGACCATTTGTTTTAGACAGAAGGGGATGTTTCCGGTGTGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACCAGACCATTTGTTTTAGACAGAAGGGGATGTTTCCGGTGTGGG  500

seq1  TGGAGCCAATGGCAGATCCAAGGGCTCTAACCTGTGCCCCAAGCTGATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCAATGGCAGATCCAAGGGCTCTAACCTGTGCCCCAAGCTGATCC  550

seq1  AGACTGACCAGACCCTTCAGAAATCTGTTCTTCTCTTACCTGCTTCCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACCAGACCCTTCAGAAATCTGTTCTTCTCTTACCTGCTTCCTGA  600

seq1  TAGTTCCAAGAATTC  613
      |||||||||||||||
seq2  TAGTTCCAAGAATTC  615