BAC Information

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BAC

Clone NameB6Ng01-101C03
Chromosome10 (Build37)
Map Location 24,168,180 - 24,311,618
singlet/doubletdoublet
Overlap geneLOC628537
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1
Downstream geneCtgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101C03.bB6Ng01-101C03.g
ACCDH910418DH910419
length885614
definitionDH910418|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C03, 5' end.DH910419|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,310,735 - 24,311,618)(24,168,180 - 24,168,792)
sequence
gaattccacccctctccctcccagaaaagcttgggcagggggcgtatgcc
agagtctttttgaaaaatagtaataaatatttttctaaaaccctcaggga
ccgtggcttggtttcctggacctatttgcttctgatgaagttttaaggag
tgtgccctctcacagggagttagaagttggaaggaagcatggatgtttgc
tatggaaattacattcattgctttcctgcttttttcttcttttataatga
attctctaattttcttaggatattttcagacgcaaaggtattggtcagaa
ggcaattactctgtgtggtttgtttaacatttgcctgctcatttccttgc
ttgaacctgtagtctggggtagaggaggagagggaggacactctgtctta
atgaggtactccctacacattctctcaagttaaactgggctagtcctctc
cgctgactctaggcttgtgctaacagcaggtggcgatagagagcacaagt
gttgctaaggccccagccttctcttacaggtggcaagtcaaaagtattgc
gaatgagggagaatctggccctgtttttccaattgaattaagtgcaatat
gaaatgtgataggttatgtaaatctagaagggagatactcatttattaaa
atgtgtactttggagggactaatcaacaggtttaggaggaacaaattggg
atggagtgtttattccaaggaacggaagtaaatgaaagtagtgggagaca
gctgataactatacatgaacacaccccagaattttggtgaggtgtgggat
aaatttaggcagagtcccatctgttcacccttggaaacgtgcctgtggtc
tgagccctgtaattgcaatgctaggggtcttggat
gaattcattccaagttggagggatattttttcccttgacattttgcagct
gaggcggccccaaggaggaagctgaagagcgtaacattaccaaatatgtc
ctttctcctgcttgtatattttatttccacaggaaaagaaggcagattca
ggccaagaagggctggccaagaagaaccgggccatcgcaggcagcttctg
gcagatgaagacattgatcagtcgccatagttctcaagaaaggaagctgt
tggtgcccaccagtagaaatctgctttgcttcaagacaaattctgacaat
ttttttttacatgttatccctctgtttcagaaaaattacctgtccttgtg
ttggtctcctgttcttaaaagcacttgagtgggatttaaagccagtgtgt
attcctttaactaagcctgtgtattctccaactgggagggtcagtctaca
gtgaggtttcagaagcctcatctatgaaatgaagatgcaggttgcccaag
tcacgttaaattcccaagactggtaactctagcctttatttgatcacgtg
ctttaatcccttaaatttcagcactcttccctatatttatgtatgcatga
ttcagaattactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_24310735_24311618
seq2: B6Ng01-101C03.b_42_926 (reverse)

seq1  ATCCAGAGACCCCTAGCATTGCAAGTCCAGGGCTCAGACCACAGGCACGT  50
      ||||| |||||||||||||||||| | |||||||||||||||||||||||
seq2  ATCCA-AGACCCCTAGCATTGCAATTACAGGGCTCAGACCACAGGCACGT  49

seq1  TTCCAAGGGTGAACAGATGGGACTCTGCCTAAATTTATCCCACACCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGGTGAACAGATGGGACTCTGCCTAAATTTATCCCACACCTCAC  99

seq1  CAAAATTCTGGGGTGTGTTCATGTATAGTTATCAGCTGTCTCCCACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCTGGGGTGTGTTCATGTATAGTTATCAGCTGTCTCCCACTACT  149

seq1  TTCATTTACTTCCGTTCCTTGGAATAAACACTCCATCCCAATTTGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTACTTCCGTTCCTTGGAATAAACACTCCATCCCAATTTGTTCCT  199

seq1  CCTAAACCTGTTGATTAGTCCCTCCAAAGTACACATTTTAATAAATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCTGTTGATTAGTCCCTCCAAAGTACACATTTTAATAAATGAGT  249

seq1  ATCTCCCTTCTAGATTTACATAACCTATCACATTTCATATTGCACTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTTCTAGATTTACATAACCTATCACATTTCATATTGCACTTAAT  299

seq1  TCAATTGG-AAAACAGGGCCAGATTCTCCCTCATTCGCAATACTTTTGAC  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGAAAAACAGGGCCAGATTCTCCCTCATTCGCAATACTTTTGAC  349

seq1  TTGCCACCTGTAAGAGAAGGCTGGGGCCTTAGCAACACTTGTGCTCTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCTGTAAGAGAAGGCTGGGGCCTTAGCAACACTTGTGCTCTCTA  399

seq1  TCGCCACCTGCTGTTAGCACAAGCCTAGAGTCAGCGGAGAGGACTAGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCACCTGCTGTTAGCACAAGCCTAGAGTCAGCGGAGAGGACTAGCCC  449

seq1  AGTTTAACTTGAGAGAATGTGTAGGGAGTACCTCATTAAGACAGAGTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACTTGAGAGAATGTGTAGGGAGTACCTCATTAAGACAGAGTGTC  499

seq1  CTCCCTCTCCTCCTCTACCCCAGACTACAGGTTCAAGCAAGGAAATGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCCTCCTCTACCCCAGACTACAGGTTCAAGCAAGGAAATGAGC  549

seq1  AGGCAAATGTTAAACAAACCACACAGAGTAATTGCCTTCTGACCAATACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATGTTAAACAAACCACACAGAGTAATTGCCTTCTGACCAATACC  599

seq1  TTTGCGTCTGAAAATATCCTAAGAAAATTAGAGAATTCATTATAAAAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTCTGAAAATATCCTAAGAAAATTAGAGAATTCATTATAAAAGAA  649

seq1  GAAAAAAGCAGGAAAGCAATGAATGTAATTTCCATAGCAAACATCCATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGCAGGAAAGCAATGAATGTAATTTCCATAGCAAACATCCATGC  699

seq1  TTCCTTCCAACTTCTAACTCCCTGTGAGAGGGCACACTCCTTAAAACTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCAACTTCTAACTCCCTGTGAGAGGGCACACTCCTTAAAACTTC  749

seq1  ATCAGAAGCAAATAGGTCCAGGAAACCAAGCCACGGTCCCTGAGGGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGCAAATAGGTCCAGGAAACCAAGCCACGGTCCCTGAGGGTTTT  799

seq1  AGAAAAATATTTATTACTATTTTTCAAAAAGACTCTGGCATACGCCCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATATTTATTACTATTTTTCAAAAAGACTCTGGCATACGCCCCCT  849

seq1  GCCC-CGCTTTTCTGGGAGGGAGAGGGGTGGAATTC  884
      ||||  ||||||||||||||||||||||||||||||
seq2  GCCCAAGCTTTTCTGGGAGGGAGAGGGGTGGAATTC  885

seq1: chr10_24168180_24168792
seq2: B6Ng01-101C03.g_68_681

seq1  GAATTCATTCCAAGTTGGAGGGATATTTTTTCCCTTGACATTTTGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAAGTTGGAGGGATATTTTTTCCCTTGACATTTTGCAGCT  50

seq1  GAGGCGGCCCCAAGGAGGAAGCTGAAGAGCGTAACATTACCAAATATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGCCCCAAGGAGGAAGCTGAAGAGCGTAACATTACCAAATATGTC  100

seq1  CTTTCTCCTGCTTGTATATTTTATTTCCACAGGAAAAGAAGGCAGATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTGCTTGTATATTTTATTTCCACAGGAAAAGAAGGCAGATTCA  150

seq1  GGCCAAGAAGGGCTGGCCAAGAAGAACCGGGCCATCGCAGGCAGCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAAGGGCTGGCCAAGAAGAACCGGGCCATCGCAGGCAGCTTCTG  200

seq1  GCAGATGAAGACATTGATCAGTCGCCATAGTTCTCAAGAAAGGAAGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAAGACATTGATCAGTCGCCATAGTTCTCAAGAAAGGAAGCTGT  250

seq1  TGGTGCCCACCAGTAGAAATCTGCTTTGCTTCAAGACAAATTCTGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCACCAGTAGAAATCTGCTTTGCTTCAAGACAAATTCTGACAAT  300

seq1  TTTTTTTTACATGTTATCCCTCTGTTTCAGAAAAATTACCTGTCCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTACATGTTATCCCTCTGTTTCAGAAAAATTACCTGTCCTTGTG  350

seq1  TTGGTCTCCTGTTCTTAAAAGCACTTGAGTGGGATTTAAAGCCAGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCCTGTTCTTAAAAGCACTTGAGTGGGATTTAAAGCCAGTGTGT  400

seq1  ATTCCTTTAACTAAGCCTGTGTATTCTCCAACTGGGAGGGTCAGTCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTAACTAAGCCTGTGTATTCTCCAACTGGGAGGGTCAGTCTACA  450

seq1  GTGAGGTTTCAGAAGCCTCATCTATGAAATGAAGATGCAGGTTGCCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTTCAGAAGCCTCATCTATGAAATGAAGATGCAGGTTGCCCAAG  500

seq1  TCACGTTAAATTCCCAAGACTGGTAACTCTAGCC-TTATTTGATCACGTG  549
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCACGTTAAATTCCCAAGACTGGTAACTCTAGCCTTTATTTGATCACGTG  550

seq1  CTTTAATCCCTTAAATTTCAGCACTCTTCCCAATATTTATGTATGCATGA  599
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTTAATCCCTTAAATTTCAGCACTCTTCCCTATATTTATGTATGCATGA  600

seq1  TTCAGAATTACTAC  613
      ||||||||||||||
seq2  TTCAGAATTACTAC  614