BAC Information

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BAC

Clone NameB6Ng01-101C04
Chromosome6 (Build37)10 (Build37)
Map Location 18,835,452 - 18,835,968101,157,073 - 101,158,209
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101C04.bB6Ng01-101C04.g
ACCDH910420DH910421
length9841,126
definitionDH910420|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C04, 5' end.DH910421|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,452 - 18,835,968)(101,157,073 - 101,158,209)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccgtaggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtacaaccactctggaaatcagtctggtggttcctcagaaaactgga
tatagtactaccggaggatccagcaatacctctcctgggcatatatccag
aagatgccccaactggtaagaaggacacatgctccactatgttcatagca
accttatttataatagccagaagctggaaggaacccagatgcccctcaac
agaggaatggatacagaaaatgtggtatatctacacaatggagtactact
cagctattaaaaggattgaatttatgaaatttcctagccaaatggatgga
cctggagggcatcattcttgagtgaggtaacacatttcacaaggaactca
cacaatattgtactcactgatagttgatattagc
gaattcacacatttagcatgtgcttggtgaatataaagatgaatggaaac
ctggcagttttcattcaaaagtgtccctccaaatatgattgttctgttcc
attttaattctgtaaagtgagcaaaactaaaactgcattttaaaattatg
cattgaactagtttatacaccatttctccacttagaacacattattaaaa
tagtaatgtttatatacaaactaagtaaggtcagtacttctgaaattcca
tgttcatagcttactcttcattaagtattatctaatcaaactaagtttat
atgtaacattctgaggaaagaactcttcaacttttccagactttactagg
aaggaacagtaacattattaactataatactgccatgtattatatattac
tataaagcatttaaataaaagtaaacaagcaataatcctcccccactaca
ctgcatctcaatatatttaagcacaattttcactgatgtcattaatgtaa
ttgaaaataatcttgccatgctttgggtgttcttatactgcattgactaa
gtgttaaacacaagatctaactcctagctcacttatgtagaatgataggc
cactatttcatcttttaacttctcaagtcctcactctataaagtgatgaa
agcaataattaataattatcatgtaaatctgctgatcagattctcatgag
gaaaaaaatcctcaagtgatcttgtaatttttactctttggggtgtcttg
gagagaaacaagctcttttgaaaatctgtgtaacatccaaagtcatttta
accctggaatacatcactatccctctaaaaatgacttgagactatgcttt
tagataattgaacctgaggtgtgaaatttattgatttttgttgaaagaat
ggagattgaagttttgttcaggactaaaaagtagttttggcttttgtgaa
ataataaaaataaatggtaatgataataataaataatattctaaactgtt
aaatgaaaatttagaccatctttagtcatattaagggctgaaatgaagac
acattctaattccttcagttgagattcatactgaagcagactgaatgtac
agattagaatctgacaacttacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835452_18835968
seq2: B6Ng01-101C04.b_43_560 (reverse)

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTACGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100

seq1  GTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTA  150
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  GTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  250

seq1  GGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAA  299
      |||||| ||||||||||||||||||||||| |||||||| || | |||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  450

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  499
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  500

seq1  GAACTGAACAAAGAATTC  517
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr10_101157073_101158209
seq2: B6Ng01-101C04.g_69_1194 (reverse)

seq1  TTCTGTGAAGTTGGTCAGTATTCTAAATCTGTAACAATTCAGTCTGCTTC  50
      |||||| ||||| ||||| ||||| ||||||||   ||||||||||||||
seq2  TTCTGT-AAGTT-GTCAG-ATTCT-AATCTGTA--CATTCAGTCTGCTTC  44

seq1  AGTTATGAATCTCAACTGAGGAAATTAGAAATGTGTCTTTCATTTCAGGC  100
      || |||||||||||||||| | |||||| |||||||| ||||||||| ||
seq2  AG-TATGAATCTCAACTGAAGGAATTAG-AATGTGTC-TTCATTTCA-GC  90

seq1  CCTTAAATATGACCTAAAGATGGTCTTAAATTTTCATTTAACAGTTTAGA  150
      |||| ||||||| |||||||||||| ||||||||||||||||||||||||
seq2  CCTT-AATATGA-CTAAAGATGGTC-TAAATTTTCATTTAACAGTTTAGA  137

seq1  ATTATTATTTATTATTATCATTACCATTTATTTTTATTATTTCACAAAAG  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TATTATTTATTATTATCATTACCATTTATTTTTATTATTTCACAAAAG  186

seq1  CCAAAACTACTTTTTAGTCCTGAACAAAACTTCAATCT-CTTTCTTTCAA  249
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  CCAAAACTACTTTTTAGTCCTGAACAAAACTTCAATCTCCATTCTTTCAA  236

seq1  CAAAAATCAATAAATTTCACACCTCAGGTTCAATTATCTAAAAGCATAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCAATAAATTTCACACCTCAGGTTCAATTATCTAAAAGCATAGT  286

seq1  CTC-AGTCATTTTTAGAGGGATAGTGATGTATTCCAGGGTTAAAATGACT  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCATTTTTAGAGGGATAGTGATGTATTCCAGGGTTAAAATGACT  336

seq1  TTGGATGTTACACAGATTTTCAAAAGAGCTTGTTTCTCTCCAAGACACCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTTACACAGATTTTCAAAAGAGCTTGTTTCTCTCCAAGACACCC  386

seq1  CAAAGAGTAAAAATTACAAGATCACTTGAGGATTTTTTTCCTCATGAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTAAAAATTACAAGATCACTTGAGGATTTTTTTCCTCATGAGAA  436

seq1  TCTGATCAGCAGATTTACATGATAATTATTAATTATTGCTTTCATCACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCAGCAGATTTACATGATAATTATTAATTATTGCTTTCATCACTT  486

seq1  TATAGAGTGAGGACTTGAGAAGTTAAAAGATGAAATAGTGGCCTATCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTGAGGACTTGAGAAGTTAAAAGATGAAATAGTGGCCTATCATT  536

seq1  CTACATAAGTGAGCTAGGAGTTAGATCTTGTGTTTAACACTTAGTCAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAAGTGAGCTAGGAGTTAGATCTTGTGTTTAACACTTAGTCAATG  586

seq1  CAGTATAAGAACACCCAAAGCATGGCAAGATTATTTTCAATTACATTAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAAGAACACCCAAAGCATGGCAAGATTATTTTCAATTACATTAAT  636

seq1  GACATCAGTGAAAATTGTGCTTAAATATATTGAGATGCAGTGTAGTGGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGTGAAAATTGTGCTTAAATATATTGAGATGCAGTGTAGTGGGG  686

seq1  GAGGATTATTGCTTGTTTACTTTTATTTAAATGCTTTATAGTAATATATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTATTGCTTGTTTACTTTTATTTAAATGCTTTATAGTAATATATA  736

seq1  ATACATGGCAGTATTATAGTTAATAATGTTACTGTTCCTTCCTAGTAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGCAGTATTATAGTTAATAATGTTACTGTTCCTTCCTAGTAAAG  786

seq1  TCTGGAAAAGTTGAAGAGTTCTTTCCTCAGAATGTTACATATAAACTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAGTTGAAGAGTTCTTTCCTCAGAATGTTACATATAAACTTAG  836

seq1  TTTGATTAGATAATACTTAATGAAGAGTAAGCTATGAACATGGAATTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAGATAATACTTAATGAAGAGTAAGCTATGAACATGGAATTTCA  886

seq1  GAAGTACTGACCTTACTTAGTTTGTATATAAACATTACTATTTTAATAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTGACCTTACTTAGTTTGTATATAAACATTACTATTTTAATAAT  936

seq1  GTGTTCTAAGTGGAGAAATGGTGTATAAACTAGTTCAATGCATAATTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAGTGGAGAAATGGTGTATAAACTAGTTCAATGCATAATTTTA  986

seq1  AAATGCAGTTTTAGTTTTGCTCACTTTACAGAATTAAAATGGAACAGAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTTTTAGTTTTGCTCACTTTACAGAATTAAAATGGAACAGAAC  1036

seq1  AATCATATTTGGAGGGACACTTTTGAATGAAAACTGCCAGGTTTCCATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTTGGAGGGACACTTTTGAATGAAAACTGCCAGGTTTCCATTC  1086

seq1  ATCTTTATATTCACCAAGCACATGCT-ACTGTGTGAATTC  1137
      |||||||||||||||||||||||||| | |||||||||||
seq2  ATCTTTATATTCACCAAGCACATGCTAAATGTGTGAATTC  1126