BAC Information

Click to search

BAC

Clone NameB6Ng01-101N03
Chromosome10 (Build37)10 (Build37)
Map Location 56,972,731 - 56,973,793104,054,118 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
Downstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101N03.bB6Ng01-101N03.g
ACCDH910889DH910890
length1,043845
definitionDH910889|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N03, 5' end.DH910890|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,972,731 - 56,973,793)(104,054,118 - 104,054,363)
sequence
gaattcttattttcaagtgttcatagtaattcacagctttgcttataata
aaaaggttaatcttggaaaaaattaagggaaattaaattcaaaaaagcta
taactctcttctaaatacaaaatatctataaagctagaaatgatgtgtat
aaatgtacataaatattatcacaaatatatacacatatatatttatagtc
atatatattatatgtagtcacaaaagaaaaccataaactttattctctca
gttgaatccaagtaaatgacaacagatcaaaagaataacaatttaagttc
agttacataggcatcattttgttagtgtccattttataggtgttttagtg
ctcattcacatagtaaatggatcaatctgagtagtcctttctacaagtga
aagctctagggctttctacgtactcattcaggtttggagagtgagactaa
gaattattttaaatgttctataagaaaaattatattttcaaagtgtttgt
attcataaacatgcttttgcttctttagcatgcctttaatcccagcactt
gggaggcagagtcaggcagatttctcggttccaggctagcctggtctaca
aagtgagttccaggacagccagtgctatagagagaaacctggtctcgaaa
acaaacaaacaaacaaacaaacaaacaaaacaaaaaccaaaaaccaaaaa
ccaaaaaccaaaaaccaaaaaccaaaaaccaaaaaccaaaaaccaaaaaa
caaaaacaaaaaacaaaaaacaaaaaacaaaaacaaaacaaagaatatat
taaattaggtacgttattttatttttaaatgtaaagaaatctaataccac
tgaatgagcaaaagaaaattttaattatgtctccaaggattcatatttgg
gttccaccataaataattaactttgacatgtctgttgtctttgtggacta
gaacaaattgaaagtttaaatgcaaatcattaagaaagctaaatgatttg
agatagcatcagagatcaattctgtaatatgcagtgtctatga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
gtattgcaggcttgtacaaccgctctggaaatcagtctggcggttcctca
aaaatcacacatcctttatctttagtcatttgtcaatgaggcctctgtgg
tttttaaattatatatattctttaattagcaaagcatcttcagaatttta
tccagatttaatccagatttaaattttttgaatgtctatatcttaatatt
gcaaacatattaaaatttgaaatttcaaaatttggaataaaattttatga
tttaagaattttatagatacatagcatgtgttatgatcattttcagccca
tcatttcttccattctactttctctaaaccatactccaaaacttcctctt
gcaaacgtcattttcttttaaaaaatattccattatatctaattaatgat
ccctgtatgtgtgggtgtatgggatcatctactggagtttgggaaacttt
cctaaagataaataattgtcctgctagccaccatcaatttgctaataact
cttctactaggtgtggggccttatgaggtccatcccaatccatgtttagt
catgggcaggtaatcgagggtgtttggaggtcatgagtgcaactgctatg
ttatatctttttttgattattacattgtttttctttcagaaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56972731_56973793
seq2: B6Ng01-101N03.b_48_1090

seq1  GAATTCTTATTTTCAAGTGTTCATAGTAATTCACAGCTTTGCTTATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTTCAAGTGTTCATAGTAATTCACAGCTTTGCTTATAATA  50

seq1  AAAAGGTTAATCTTGGAAAAAATTAAGGGAAATTAAATTCAAAAAAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTAATCTTGGAAAAAATTAAGGGAAATTAAATTCAAAAAAGCTA  100

seq1  TAACTCTCTTCTAAATACAAAATATCTATAAAGCTAGAAATGATGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCTTCTAAATACAAAATATCTATAAAGCTAGAAATGATGTGTAT  150

seq1  AAATGTACATAAATATTATCACAAATATATACACATATATATTTATAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACATAAATATTATCACAAATATATACACATATATATTTATAGTC  200

seq1  ATATATATTATATGTAGTCACAAAAGAAAACCATAAACTTTATTCTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTATATGTAGTCACAAAAGAAAACCATAAACTTTATTCTCTCA  250

seq1  GTTGAATCCAAGTAAATGACAACAGATCAAAAGAATAACAATTTAAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATCCAAGTAAATGACAACAGATCAAAAGAATAACAATTTAAGTTC  300

seq1  AGTTACATAGGCATCATTTTGTTAGTGTCCATTTTATAGGTGTTTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATAGGCATCATTTTGTTAGTGTCCATTTTATAGGTGTTTTAGTG  350

seq1  CTCATTCACATAGTAAATGGATCAATCTGAGTAGTCCTTTCTACAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCACATAGTAAATGGATCAATCTGAGTAGTCCTTTCTACAAGTGA  400

seq1  AAGCTCTAGGGCTTTCTACGTACTCATTCAGGTTTGGAGAGTGAGACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTAGGGCTTTCTACGTACTCATTCAGGTTTGGAGAGTGAGACTAA  450

seq1  GAATTATTTTAAATGTTCTATAAGAAAAATTATATTTTCAAAGTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTTTAAATGTTCTATAAGAAAAATTATATTTTCAAAGTGTTTGT  500

seq1  ATTCATAAACATGCTTTTGCTTCTTTAGCATGCCTTTAATCCCAGCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAACATGCTTTTGCTTCTTTAGCATGCCTTTAATCCCAGCACTT  550

seq1  GGGAGGCAGAGTCAGGCAGATTTCTCGGTTCCAGGCTAGCCTGGTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGTCAGGCAGATTTCTCGGTTCCAGGCTAGCCTGGTCTACA  600

seq1  AAGTGAGTTCCAGGACAGCCAGTGCTATAGAGAGAAACCTGGTCTCGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCCAGGACAGCCAGTGCTATAGAGAGAAACCTGGTCTCGAAA  650

seq1  ACAAACAAACAAACAAACAAACAAACAAAACAAAAACCAAAAACCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAACAAAACAAAAACCAAAAACCAAAAA  700

seq1  CCAAAAACCAAAAACCAAAAACCAAAAACCAAAAACCAAAAACCAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACCAAAAACCAAAAACCAAAAACCAAAAACCAAAAACCAAAAAA  750

seq1  ACAAAAAACAAAAAACAAAAAACAAAAAACAAAAACAAAAACAAAGAATA  800
         ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  --CAAAAACAAAAAACAAAAAACAAAAAACAAAAAC-AAAACAAAGAATA  797

seq1  TATTAAATTAGGTACGTTATTTTATTTTTAAATGTAAAGAAATCTAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTAGGTACGTTATTTTATTTTTAAATGTAAAGAAATCTAATAC  847

seq1  CACTGAATGAGCAAAAGAAAAATTTTAATTATGTCTCCAAAAGGATTCAT  900
      ||||||||||||||||| ||||||||||||||||||||  ||||||||||
seq2  CACTGAATGAGCAAAAG-AAAATTTTAATTATGTCTCC--AAGGATTCAT  894

seq1  ATTTGGGTTCCACCATAAATAATTAACTTTGACATGTCTGTGTCCTTTGT  950
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  ATTTGGGTTCCACCATAAATAATTAACTTTGACATGTCTGTTGTCTTTGT  944

seq1  GACCTAGAACACATTGACAGTTTTAAAAATGCAAATCATTAAAGAAAGCT  1000
      |  |||||||| ||||| |||||   |||||||||||||| |||||||||
seq2  GGACTAGAACAAATTGAAAGTTT---AAATGCAAATCATT-AAGAAAGCT  990

seq1  AAAATGATTTGAGAATAAGCATTCCAAGAGATCAAATTTCTGTAATATGC  1050
       |||||||||||||   |||||    |||||||||  |||||||||||||
seq2  -AAATGATTTGAGA--TAGCAT---CAGAGATCAA--TTCTGTAATATGC  1032

seq1  CAAGTGTCTATGA  1063
        |||||||||||
seq2  --AGTGTCTATGA  1043

seq1: chr10_104054118_104054363
seq2: B6Ng01-101N03.g_70_315 (reverse)

seq1  GAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACC  50
      |||||||||||| ||||||||||| ||||||||||||||||||| |||||
seq2  GAACCGCCAGACTGATTTCCAGAGCGGTTGTACAAGCCTGCAATACCACC  50

seq1  AACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTG  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACAATGGAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTG  100

seq1  TCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCT  150

seq1  CAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATT  200

seq1  TTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  246