BAC Information

Click to search

BAC

Clone NameB6Ng01-102C19
Chromosome10 (Build37)
Map Location 104,661,121 - 104,808,113
singlet/doubletdoublet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102C19.bB6Ng01-102C19.g
ACCDH911142DH911143
length1,2191,094
definitionDH911142|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C19, 5' end.DH911143|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,661,121 - 104,662,359)(104,807,011 - 104,808,113)
sequence
gaattcaataaatgatagagccgcagctcagtgcaggtcctggtttccat
tgcagtccctgacaccacatataatcaggcatgggagtgggcatgtaatc
atagctccctggaagtagaggaggaaggatttttttttttcacatatgat
gtcagcttggtcttcacagtgagttccacgactcactcactatgatttcg
ttaactaaatcaagaccttaccatcagccccctccacatagcagatgcaa
ataacactctggcccccgaaatcctactgaacagatgtactaactggcca
gccacacaatgggctaaggctagcttataacgtgcattctcacagaaggc
aagtatgattcgccagccagcaactttaatgtctatagttctttcttccc
tcctccttccatcccttctttctttcctccttccctccccctgtttttct
tttcttctgtcccttcttccctccaaacttttcccccttccttcttccct
tcctctctccctccctccttctttgatcttaaattataacctaggttggc
ttttgaactcacaaaaagccaaagttagtgtctagtgagtgatctttctg
tttcaggcccccagggctctcagacacaggtgtgaaacgcctcagagagc
tcacagtcaagttatttctcttgtagagtataggattatctctccttcca
gctctcaggaggacactgctattcagagctatcagctggatttcagtccc
tagtaaactttccttctcatgcccatgtcctatggtacctctcatgtttg
tcatttcctccttacctggaattgttcccttattgtggctacaaatttca
aaataggtcactcattgacatttacaaagggaataaactatgatttctag
attttttctctctcataaagctgactaataagtattaaaagagttggctc
attttcctatcctaatttcatatagataaagcatagatatatatacacac
atatgttataatgtaacctacacatatatactataaatatgtgtatataa
aattgctgccctagaatgtttctggattttttaagagtaaagaaatctgg
taaagtatgtctactgaaatgcagaatgctcctttttggttaattgtaaa
aaaaaaactggccaattaaggctctcatgaagaccaaatcaaccctggtc
taagagaagctattttttt
gaattcatttcgtaacggtcagaacctggatgctttggtcattgatgttt
tagaaaggaaattggagaaaggaaaagcacgtatccaaatttaggtacaa
actaggattctggtcacttcttttctttggatgaaagtttccccaagcag
attttaaaagagatgcagatgaagtcgtgatttaagctctcccttaaaag
tgtttcagccgtgaatgttaaatgttgtcacattgcagtggtgatgttgt
tgacccctctccctctcttttgctttcagaggaagaacttgtctcttttt
ctcagcattagcttgttaacattctgggggacctgccttttgggtgcccg
gctgtactggatgggcaataaaccaccaagcttctccaactccgacaacc
ccgcggctgactcggacagccttttggctcgcacgctcaccttcttgtat
ttacctaccaagaacctctggctattgctctgcccggacaccctgagctt
tgattggtccatggatgccgtgcctcttctcaaaacagtttgtgattgga
gaaatctacacactgtggccttctattctggacttctcctccttgcctac
tgtggtttgaagaacccaagtttagaaggagagtgcaacgggaaagcctt
gacaaatggcaagcagaatgcaaatggccatagctgccactcagacgtgg
agtaccggaactcagaaatgaagcccagctttgcatccaaagtagagaat
ggaattaaaaattgtgtaccacagagaactcagctcccgtccacggagaa
cattgttattctgtccttatctttgttgataataccttttattcctgcca
cgaacctgtttttctatgtcggctttgtaatcgcagagcgagtcttatat
attcccagtatgggcttctgccttctgatcacagtgggtgccagagccct
gtatgtcaaagtacaaaagaggtttctcagagcttggtttttatgctact
gccacgttaattgtcttctacggagtcaagactgcgatcagacgagaact
ggcagacgaggagatgctgtatagaatcagatcaagtgaccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104661121_104662359
seq2: B6Ng01-102C19.b_49_1267

seq1  GAATTCAATAAATGATAGAGCCGCAGCTCAGTGCAGGTCCTGGTTTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAATGATAGAGCCGCAGCTCAGTGCAGGTCCTGGTTTCCAT  50

seq1  TGCAGTCCCTGACACCACATATAATCAGGCATGGGAGTGGGCATGTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCCTGACACCACATATAATCAGGCATGGGAGTGGGCATGTAATC  100

seq1  ATAGCTCCCTGGAAGTAGAGGAGGAAGGATTTTTTTTTTTCACATATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCCCTGGAAGTAGAGGAGGAAGGATTTTTTTTTTTCACATATGAT  150

seq1  GTCAGCTTGGTCTTCACAGTGAGTTCCACGACTCACTCACTATGATTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTGGTCTTCACAGTGAGTTCCACGACTCACTCACTATGATTTCG  200

seq1  TTAACTAAATCAAGACCTTACCATCAGCCCCCTCCACATAGCAGATGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAAATCAAGACCTTACCATCAGCCCCCTCCACATAGCAGATGCAA  250

seq1  ATAACACTCTGGCCCCCGAAATCCTACTGAACAGATGTACTAACTGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTCTGGCCCCCGAAATCCTACTGAACAGATGTACTAACTGGCCA  300

seq1  GCCACACAATGGGCTAAGGCTAGCTTATAACGTGCATTCTCACAGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAATGGGCTAAGGCTAGCTTATAACGTGCATTCTCACAGAAGGC  350

seq1  AAGTATGATTCGCCAGCCAGCAACTTTAATGTCTATAGTTCTTTCTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGATTCGCCAGCCAGCAACTTTAATGTCTATAGTTCTTTCTTCCC  400

seq1  TCCTCCTTCCATCCCTTCTTTCTTTCCTCCTTCCCTCCCCCTGTTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCCATCCCTTCTTTCTTTCCTCCTTCCCTCCCCCTGTTTTTCT  450

seq1  TTTCTTCTGTCCCTTCTTCCCTCCAAACTTTTCCCCCTTCCTTCTTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGTCCCTTCTTCCCTCCAAACTTTTCCCCCTTCCTTCTTCCCT  500

seq1  TCCTCTCTCCCTCCCTCCTTCTTTGATCTTAAATTATAACCTAGGTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTCCCTCCCTCCTTCTTTGATCTTAAATTATAACCTAGGTTGGC  550

seq1  TTTTGAACTCACAAAAAGCCAAAGTTAGTGTCTAGTGAGTGATCTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACTCACAAAAAGCCAAAGTTAGTGTCTAGTGAGTGATCTTTCTG  600

seq1  TTTCAGGCCCCCAGGGCTCTCAGACACAGGTGTGAAACGCCTCAGAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCCCCCAGGGCTCTCAGACACAGGTGTGAAACGCCTCAGAGAGC  650

seq1  TCACAGTCAAGTTATTTCTCTTGTAGAGTATAGGATTATCTCTCCTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCAAGTTATTTCTCTTGTAGAGTATAGGATTATCTCTCCTTCCA  700

seq1  GCTCTCAGGAGGACACTGCTATTCAGAGCTATCAGCTGGATTTCAGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGGAGGACACTGCTATTCAGAGCTATCAGCTGGATTTCAGTCCC  750

seq1  TAGTAAACTTTCCTTCTCATGCCCATGTCCTATGGTACCTCTCATGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACTTTCCTTCTCATGCCCATGTCCTATGGTACCTCTCATGTTTG  800

seq1  TCATTTCCTCCTTACCTGGAATTGTTCCCTTATTGTGGCTACAAATTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTCCTTACCTGGAATTGTTCCCTTATTGTGGCTACAAATTTCA  850

seq1  AAATAGGTCACTCATTGACATTTACAAAGGGAAATAAACTATGATTTCTA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAATAGGTCACTCATTGACATTTACAAAGGG-AATAAACTATGATTTCTA  899

seq1  GATTTTTTCTCTCTCATAAAGCTGACTAATAAGTATTAAAAGAGTTGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTCTCTCTCATAAAGCTGACTAATAAGTATTAAAAGAGTTGGCT  949

seq1  CATTTTCCTATCCTAATTTCATATAGATAAAGCATAGATATATATACACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTATCCTAATTTCATATAGATAAAGCATAGATATATATACACA  999

seq1  CATATGTATAT-ATGTATACATACACATATATACATATAAAATATGTGTA  1049
      ||||||| ||| ||||| || ||||||||||||| ||| |||||||||||
seq2  CATATGT-TATAATGTA-ACCTACACATATATAC-TAT-AAATATGTGTA  1045

seq1  TATAAAATTGCTGCACTAGAATGTTTCTGTATTTTTTAAGAGTAAAGAAA  1099
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TATAAAATTGCTGCCCTAGAATGTTTCTGGATTTTTTAAGAGTAAAGAAA  1095

seq1  TCTTGTATAAGGTAAATTGTCTACTGAAATGCAGACATGCTCTTTTGGGT  1149
      ||| |  ||| |||   |||||||||||||||||| |||||| |||  | 
seq2  TCTGG--TAAAGTA---TGTCTACTGAAATGCAGA-ATGCTCCTTTTTGG  1139

seq1  TTAATTGTTAAAAAAAAAAAAAAACTGGCCAATTTAAAGTCATCT-ATGA  1198
      ||||||||      ||||||||||||||||||||  ||| | ||| ||||
seq2  TTAATTGT------AAAAAAAAAACTGGCCAATT--AAGGC-TCTCATGA  1180

seq1  GAGTAACAAAATCAACCTTTGTC-ATAAGAAGCTATTTTTTT  1239
       ||  || ||||||||| | ||| |  |||||||||||||||
seq2  -AG--ACCAAATCAACCCTGGTCTAAGAGAAGCTATTTTTTT  1219

seq1: chr10_104807011_104808113
seq2: B6Ng01-102C19.g_68_1161 (reverse)

seq1  GCTGGGTTCACTTTGATCCCTGA-TCTATACAGCATCTCCTCGTTCTGCC  49
      |||||  |||| |||||  |||| ||||||||||||||||||| ||||||
seq2  GCTGG--TCAC-TTGAT--CTGATTCTATACAGCATCTCCTCG-TCTGCC  44

seq1  AGTCTCCGTTCCTGATCGCAGTCTTGACTCCGTAGAAGACAATTAACGTG  99
      |||   |||  |||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCGT--CTGATCGCAGTCTTGACTCCGTAGAAGACAATTAACGTG  92

seq1  GCAGTAGCATAAAAAACCAAGCTCTTGAGAAACCTCTTTTGTACTTTGAC  149
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  GCAGTAGCAT-AAAAACCAAGCTC-TGAGAAACCTCTTTTGTACTTTGAC  140

seq1  ATACAGGGCTCTGGCACCCACTGTGATCAGAAGGCAGAAGCCCATACTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGGCTCTGGCACCCACTGTGATCAGAAGGCAGAAGCCCATACTGG  190

seq1  GAATATATAAGACTCGCTCTGCGATTACAAAGCCGACATAGAAAAACAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATAAGACTCGCTCTGCGATTACAAAGCCGACATAGAAAAACAGG  240

seq1  TTCGTGGCAGGAATAAAAGGTATTATCAACAAAGATAAGGACAGAATAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGGCAGGAATAAAAGGTATTATCAACAAAGATAAGGACAGAATAAC  290

seq1  AATGTTCTCCGTGGACGGGAGCTGAGTTCTCTGTGGTACACAATTTTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTCCGTGGACGGGAGCTGAGTTCTCTGTGGTACACAATTTTTAA  340

seq1  TTCCATTCTCTACTTTGGATGCAAAGCTGGGCTTCATTTCTGAGTTCCGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCTCTACTTTGGATGCAAAGCTGGGCTTCATTTCTGAGTTCCGG  390

seq1  TACTCCACGTCTGAGTGGCAGCTATGGCCATTTGCATTCTGCTTGCCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCACGTCTGAGTGGCAGCTATGGCCATTTGCATTCTGCTTGCCATT  440

seq1  TGTCAAGGCTTTCCCGTTGCACTCTCCTTCTAAACTTGGGTTCTTCAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGGCTTTCCCGTTGCACTCTCCTTCTAAACTTGGGTTCTTCAAAC  490

seq1  CACAGTAGGCAAGGAGGAGAAGTCCAGAATAGAAGGCCACAGTGTGTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGGCAAGGAGGAGAAGTCCAGAATAGAAGGCCACAGTGTGTAGA  540

seq1  TTTCTCCAATCACAAACTGTTTTGAGAAGAGGCACGGCATCCATGGACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAATCACAAACTGTTTTGAGAAGAGGCACGGCATCCATGGACCA  590

seq1  ATCAAAGCTCAGGGTGTCCGGGCAGAGCAATAGCCAGAGGTTCTTGGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTCAGGGTGTCCGGGCAGAGCAATAGCCAGAGGTTCTTGGTAG  640

seq1  GTAAATACAAGAAGGTGAGCGTGCGAGCCAAAAGGCTGTCCGAGTCAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACAAGAAGGTGAGCGTGCGAGCCAAAAGGCTGTCCGAGTCAGCC  690

seq1  GCGGGGTTGTCGGAGTTGGAGAAGCTTGGTGGTTTATTGCCCATCCAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGTTGTCGGAGTTGGAGAAGCTTGGTGGTTTATTGCCCATCCAGTA  740

seq1  CAGCCGGGCACCCAAAAGGCAGGTCCCCCAGAATGTTAACAAGCTAATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGGCACCCAAAAGGCAGGTCCCCCAGAATGTTAACAAGCTAATGC  790

seq1  TGAGAAAAAGAGACAAGTTCTTCCTCTGAAAGCAAAAGAGAGGGAGAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAAGAGACAAGTTCTTCCTCTGAAAGCAAAAGAGAGGGAGAGGG  840

seq1  GTCAACAACATCACCACTGCAATGTGACAACATTTAACATTCACGGCTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAACATCACCACTGCAATGTGACAACATTTAACATTCACGGCTGA  890

seq1  AACACTTTTAAGGGAGAGCTTAAATCACGACTTCATCTGCATCTCTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTAAGGGAGAGCTTAAATCACGACTTCATCTGCATCTCTTTTA  940

seq1  AAATCTGCTTGGGGAAACTTTCATCCAAAGAAAAGAAGTGACCAGAATCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCTTGGGGAAACTTTCATCCAAAGAAAAGAAGTGACCAGAATCC  990

seq1  TAGTTTGTACCTAAATTTGGATACGTGCTTTTCCTTTCTCCAATTTCCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTACCTAAATTTGGATACGTGCTTTTCCTTTCTCCAATTTCCTT  1040

seq1  TCTAAAACATCAATGACCAAAGCATCCAGGTTCTGACCGTTACGAAATGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACATCAATGACCAAAGCATCCAGGTTCTGACCGTTACGAAATGA  1090

seq1  ATTC  1103
      ||||
seq2  ATTC  1094