BAC Information

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BAC

Clone NameB6Ng01-102F06
Chromosome10 (Build37)
Map Location 91,866,204 - 92,008,996
singlet/doubletdoublet
Overlap geneLOC216229
Upstream geneLOC100041799, LOC667203
Downstream geneLOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F06.bB6Ng01-102F06.g
ACCDH911252DH911253
length1,1581,102
definitionDH911252|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F06, 5' end.DH911253|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,866,204 - 91,867,393)(92,007,981 - 92,008,996)
sequence
gaattcagctggcatagaagccacacaacaagccaaagttaaatttcctc
ttcttcactaaaccaaaaatctacgtaaatgtagacaggttagctcagtt
cacctaggtttcacctgggcgtcacacctagtgtaccaactggctatgtg
gttgttttgtttctttctgctcgagaaaacagtgttctgctgtgtagctc
agcccagcctgaaactattcatgtagtccaaacccacgaagctcctgcct
gtaaggaggcacgagtcaccatacctgcctttggtctaagtactgcaacc
ccaggcctgacatcccttaacgatagagatggcgttaactatcagagctt
ggctcttgtgtcagtgatcagagcggactgcaatatggttctcagttttc
cacttctcccttttctaaactccctttcaccgtgtgacttcttactttgt
cctcagaaaggcctttagatgtagccaagggatctgctcagatcaacaga
ctaaggcagaaatgatataccagtaatgacttcaagaaatccgtgagcag
catctcttccctcgggtgcctctacctcgcgtgttggtcccgaggggatg
agagctatgtagaaggggaactgcgttgggtaagctgtttccgctaagct
ctgaggcatgtccagctcagaagaataaacaggtttgtacactttgtata
tgacatgtagcaaaggagagatggtctttatccctgcactctgaacgaag
agttctgagactgtcccggacctgaaatccccgtgtgtccatgaagcaga
cgggaaccaagaggaaacgctctagttctcagactcgaagagcggaaggc
aaacccaccgaattctctgaacctttttcaagcatcaagactggagggaa
gaggtgggaaaccaagtacagaagcgcacccagaatccccaagtttgtcc
atttctatgtagcacgccacactttttctcacatggccccagacactcga
agcttagttctaccctgccaaatagttctcattaacacccacaatgctac
ttatgtgaatatcagtatcacttaggctatcagtttttttggtttgtttc
agataataaagtgcagagacagaaacaacgggagcatggatgccaccgta
tcccgcca
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccttcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactacgcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcattctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattaatttactttt
taacttgcttctttccttctctgtctgctcttgctaacttattatcttct
ctaacctctttacatgttccttttcattcctctgactttcttccttcctt
cctccccaccccctctcttaccaattttgatgggattcatcagggttcat
tctgggcttccttgctccctctacattgcatctctaggtgattatgtgat
ctgtgtgctggtcagtcacatggttttccttgacatttcaaactaggact
ccaaccacttacttgacaagcccttttgcacttctacagagatttctcac
tcaaggtatcagaggattctgttctattctttaccttcctacactccttc
aacagcactgccacccacttagctactcaacagagaagcctaggaaaatc
tctaacctccctcttaggcttcatagcacttgcagaagagcatccatttc
tactaaaaatattatatatattatatattattataattatataatttact
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_91866204_91867393
seq2: B6Ng01-102F06.b_45_1202

seq1  GAATTCAGCTGGCATAGAAGCCACACAACAAGCCAAAGTTAAATTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGGCATAGAAGCCACACAACAAGCCAAAGTTAAATTTCCTC  50

seq1  TTCTTCACTAAACCAAAAATCTACGTAAATGTAGACAGGTTAGCTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACTAAACCAAAAATCTACGTAAATGTAGACAGGTTAGCTCAGTT  100

seq1  CACCTAGGTTTCACCTGGGCGTCACACCTAGTGTACCAACTGGCTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGGTTTCACCTGGGCGTCACACCTAGTGTACCAACTGGCTATGTG  150

seq1  GTTGTTTTGTTTCTTTCTGCTCGAGAAAACAGTGTTCTGCTGTGTAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGTTTCTTTCTGCTCGAGAAAACAGTGTTCTGCTGTGTAGCTC  200

seq1  AGCCCAGCCTGAAACTATTCATGTAGTCCAAACCCACGAAGCTCCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCCTGAAACTATTCATGTAGTCCAAACCCACGAAGCTCCTGCCT  250

seq1  GTAAGGAGGCACGAGTCACCATACCTGCCTTTGGTCTAAGTACTGCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGGCACGAGTCACCATACCTGCCTTTGGTCTAAGTACTGCAACC  300

seq1  CCAGGCCTGACATCCCTTAACGATAGAGATGGCGTTAACTATCAGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTGACATCCCTTAACGATAGAGATGGCGTTAACTATCAGAGCTT  350

seq1  GGCTCTTGTGTCAGTGATCAGAGCGGACTGCAATATGGTTCTCAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGTGTCAGTGATCAGAGCGGACTGCAATATGGTTCTCAGTTTTC  400

seq1  CACTTCTCCCTTTTCTAAACTCCCTTTCACCGTGTGACTTCTTACTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCCCTTTTCTAAACTCCCTTTCACCGTGTGACTTCTTACTTTGT  450

seq1  CCTCAGAAAGGCCTTTAGATGTAGCCAAGGGATCTGCTCAGATCAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAGGCCTTTAGATGTAGCCAAGGGATCTGCTCAGATCAACAGA  500

seq1  CTAAGGCAGAAATGATATACCAGTAATGACTTCAAGAAATCCGTGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCAGAAATGATATACCAGTAATGACTTCAAGAAATCCGTGAGCAG  550

seq1  CATCTCTTCCCTCGGGTGCCTCTACCTCGCGTGTTGGTCCCGAGGGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCCCTCGGGTGCCTCTACCTCGCGTGTTGGTCCCGAGGGGATG  600

seq1  AGAGCTATGTAGAAGGGGAACTGCGTTGGGTAAGCTGTTTCCGCTAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATGTAGAAGGGGAACTGCGTTGGGTAAGCTGTTTCCGCTAAGCT  650

seq1  CTGAGGCATGTCCAGCTCAGAAGAATAAACAGGTTTGTACACTTTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATGTCCAGCTCAGAAGAATAAACAGGTTTGTACACTTTGTATA  700

seq1  TGACATGTAGCAAAGGAGAGATGGTCTTTATCCCTGCACTCTGAACGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTAGCAAAGGAGAGATGGTCTTTATCCCTGCACTCTGAACGAAG  750

seq1  AGTTCTGAGACTGTCCCGGACCTGAAATCCCCGTGTGTCCATGAAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGACTGTCCCGGACCTGAAATCCCCGTGTGTCCATGAAGCAGA  800

seq1  CGGGAACCAAGAGGAAACGCTCTAGTTCTCAGACTCGAAGAGCGGAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAACCAAGAGGAAACGCTCTAGTTCTCAGACTCGAAGAGCGGAAGGC  850

seq1  AAAACCCACCGAATTCTCTGAACCTTTTTCAAGCATCAAAGACTGGGAGG  900
       |||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  -AAACCCACCGAATTCTCTGAACCTTTTTCAAGCATC-AAGACT-GGAGG  897

seq1  GAAGAGGTGGGAAACCAAGTACAGAAGCGGCACCCAGAATCCCCAAGGTT  950
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  GAAGAGGTGGGAAACCAAGTACAGAAGC-GCACCCAGAATCCCCAA-GTT  945

seq1  TGTCCATTTCTATGTAGCACGCCACACCTTTTTCTCACAATGGCCCCAGA  1000
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TGTCCATTTCTATGTAGCACGCCACA-CTTTTTCTCAC-ATGGCCCCAGA  993

seq1  CACTCGAAGCCTTAGTTTCTTACCCCTGCCAAATAGTTCTCCATTAACAC  1050
      ||||||||| ||||| ||||   ||||||||||||||||| |||||||||
seq2  CACTCGAAG-CTTAG-TTCT--ACCCTGCCAAATAGTTCT-CATTAACAC  1038

seq1  CCACAAATGCTACTTATGTGAATTATCAGTATCCACTTAGGGCTATCAAG  1100
      |||| ||||||||||||||||| ||||||||| |||||| ||||||||  
seq2  CCAC-AATGCTACTTATGTGAA-TATCAGTAT-CACTTA-GGCTATCA--  1082

seq1  GTTTTTTTTGTTTTGTTTTAAAGATAAATAAAAGTGCAAAGAGACAAGAA  1150
        |||||||| |||||||   ||||||   |||||||  |||||| ||||
seq2  -GTTTTTTTGGTTTGTTT--CAGATAA--TAAAGTGC--AGAGAC-AGAA  1124

seq1  AACAAACGGGAGCATGGGATGCCACCGTTTATCCCCGCCA  1190
      |   ||||||||||| |||||||||||| |   |||||||
seq2  A--CAACGGGAGCAT-GGATGCCACCGTAT---CCCGCCA  1158

seq1: chr10_92007981_92008996
seq2: B6Ng01-102F06.g_141_1152 (reverse)

seq1  ATAATAATA-ATAATA---ATAAT-TTTTTAGTTAGAAATGGGATGCTCT  45
      ||||||||| ||||||   ||||| ||||||| ||||||| |||||||||
seq2  ATAATAATATATAATATATATAATATTTTTAG-TAGAAAT-GGATGCTCT  48

seq1  TCTGGCAGGTTGGCTATGGAGCCTAAAGAGGGAGGTTAGAGATTTTTCCT  95
      ||| ||| ||  |||||| ||||| ||||||||||||||||| |||||||
seq2  TCT-GCAAGT--GCTATGAAGCCT-AAGAGGGAGGTTAGAGA-TTTTCCT  93

seq1  AGGCTTCTCTGTTGAGTAGCTAAGTGGGTGGCAGTGCTGTTGAAGGAGGT  145
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGCTTCTCTGTTGAGTAGCTAAGTGGGTGGCAGTGCTGTTGAAGGA-GT  142

seq1  GTAGGAAGGTAAAGAATAGACCAGAATCCTCTGATACCTTGAGTGAGAAA  195
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTAGGAAGGTAAAGAATAGAACAGAATCCTCTGATACCTTGAGTGAGAAA  192

seq1  TCTCTGTTAGAAGTGCAAAAGGGCTTGTCAAGTAAGTGGTTGGAGTCCTA  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTG-TAGAAGTGCAAAAGGGCTTGTCAAGTAAGTGGTTGGAGTCCTA  241

seq1  GTTTGAAATGTCAAGGAAAACCATGTGACTGACCAGCACACAGATCACAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAATGTCAAGGAAAACCATGTGACTGACCAGCACACAGATCACAT  291

seq1  AATCACCTAGAGATGCAATGTAGAGGGAGCAAGGAAGCCCAGAATGAACC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTAGAGATGCAATGTAGAGGGAGCAAGGAAGCCCAGAATGAACC  341

seq1  CTGATGAATCCCATCAAAATTGGTAAGAGAGGGGGTGGGGAGGAAGGAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATCCCATCAAAATTGGTAAGAGAGGGGGTGGGGAGGAAGGAAG  391

seq1  GAAGAAAGTCAGAGGAATGAAAAGGAACATGTAAAGAGGTTAGAGAAGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGTCAGAGGAATGAAAAGGAACATGTAAAGAGGTTAGAGAAGAT  441

seq1  AATAAGTTAGCAAGAGCAGACAGAGAAGGAAAGAAGCAAGTTAAAAAGTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTAGCAAGAGCAGACAGAGAAGGAAAGAAGCAAGTTAAAAAGTA  491

seq1  AATTAATATCCACTTATCAGTGAATACATATTGTGTGAGTTTCTTTGTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATATCCACTTATCAGTGAATACATATTGTGTGAGTTTCTTTGTGA  541

seq1  ATGTGTTACCTCACTCAGAATGATGCCCTCCAGGTCCATCCATTTGGCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTACCTCACTCAGAATGATGCCCTCCAGGTCCATCCATTTGGCTA  591

seq1  GGAATTTCATAAATTCATTCTTTTTAATAGCTGCGTAGTACTCCATTGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCATAAATTCATTCTTTTTAATAGCTGCGTAGTACTCCATTGTG  641

seq1  TAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGGCATCTAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGGCATCTAGG  691

seq1  TTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGG  741

seq1  AGCATGTGTCCTTCTTACCTGTTGGGGCATCTTCTGGATATATGCCCAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGTCCTTCTTACCTGTTGGGGCATCTTCTGGATATATGCCCAGG  791

seq1  AGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAGTTTTCTGAGGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAGTTTTCTGAGGAA  841

seq1  CCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCACTCCCACCAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCACTCCCACCAAC  891

seq1  AATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCA  941

seq1  CCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAG  991

seq1  GGTTGTTTTGATTTGCATTTC  1016
      |||||||||||||||||||||
seq2  GGTTGTTTTGATTTGCATTTC  1012