BAC Information

Click to search

BAC

Clone NameB6Ng01-102F12
Chromosome8 (Build37)10 (Build37)
Map Location 86,640,369 - 86,640,4175,625,606 - 5,626,736
singlet/doubletsingletsinglet
Overlap geneLOC100039920
Upstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552
Downstream genePodnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F12.bB6Ng01-102F12.g
ACCDH911264DH911265
length3381,120
definitionDH911264|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F12, 5' end.DH911265|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,640,369 - 86,640,417)(5,625,606 - 5,626,736)
sequence
acattttagttttacagatatttacagtgaagaggatagctttgggtcac
agaggagactttggacttttaaacagtgtggagactttgaaaaactattg
aagcttttgatgctggacgggaggcactttgcattatgatgtggccataa
gcctgttgggggtcagggagtagaatgtgatggcttggatatggatgaac
cccacacgctcttatattcgaaggtctgtttcccaggactgtttaggaag
ggccaggaagagtggctttgttggaggaggagtgtcggagtgcgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcaaggacagccttggttatttagtaagagcttgttgaaaagataa
aagaaagaaagaaaaatggagtctcggagagagaaagagtggaagaaaaa
gggaacaaaataaacaaatggctggtacaaaaccattggcatattacaag
ttcatgtcctgagtactagatacctacaaattcacttaatcctcacaaga
cctaaaatatgtatttcttattctgattggcatcttacacatgaatatac
cttgtcacacaattaagtgacttgccaaaaatcccagtgagacaagagtc
aaggcagactagagacacgggctgcttggctcccaaacacgtgttttcac
catgcccttaattattcctggtagttactttctatgaggccactgtggat
atatagttaatgggtgctaaatccttgctcctggagaggtaaacagagtg
ggtccctgggaaactctggtcacagtttactaacccatcaatacaaaacc
ttattttatgtgtgtttctgttcaaagcacttcatttactgtaaactgtt
gactccttaacattgaactcactcaaccagattatagtttatccctaaat
acagctcatctctggcagccttttgtactgagaaacactagattgcattt
cagcactgtgcctaggggcattgcacacagtaaaaaaaataaaataaaat
aaaataataataataataataataaacaaaaacggataaaaatgccaact
ctctgccaccaagagacccccaaaaagactcatttacagcacaaagcaag
aagaaagtatgtcatgttcaaccttagaaaagaaaatacttatcaaatga
cttcaaatttttgtcactctgtacatatcagcaaatagcagaaagcatca
tccccgattggctttggatcaatttcagtgagtgagtgagtaaattttca
gtcgagaatctgtgatggatgacgagggctgactgtgtgtggatgggctg
actatgcatggaatgcctctggagtactcatcttcagagagagagccaca
gactttccacgttcttccaaacatcaaaaacccttctgcatggaatttcc
cagaagagcatgcagcttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86640369_86640417
seq2: B6Ng01-102F12.b_338_386 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACGCAC  49
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACGCAC  49

seq1: chr10_5625606_5626736
seq2: B6Ng01-102F12.g_68_1187

seq1  GAATTCAAGGACAGCCTTGGTTATTTAGTAAGAGCTTGTTGAAAAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAGCCTTGGTTATTTAGTAAGAGCTTGTTGAAAAGATAA  50

seq1  AAGAAAGAAAGAAAAATGGAGTCTCGGAGAGAGAAAGAGTGGAAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAAATGGAGTCTCGGAGAGAGAAAGAGTGGAAGAAAAA  100

seq1  GGGAACAAAATAAACAAATGGCTGGTACAAAACCATTGGCATATTACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAAATAAACAAATGGCTGGTACAAAACCATTGGCATATTACAAG  150

seq1  TTCATGTCCTGAGTACTAGATACCTACAAATTCACTTAATCCTCACAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCCTGAGTACTAGATACCTACAAATTCACTTAATCCTCACAAGA  200

seq1  CCTAAAATATGTATTTCTTATTCTGATTGGCATCTTACACATGAATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATATGTATTTCTTATTCTGATTGGCATCTTACACATGAATATAC  250

seq1  CTTGTCACACAATTAAGTGACTTGCCAAAAATCCCAGTGAGACAAGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCACACAATTAAGTGACTTGCCAAAAATCCCAGTGAGACAAGAGTC  300

seq1  AAGGCAGACTAGAGACACGGGCTGCTTGGCTCCCAAACACGTGTTTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGACTAGAGACACGGGCTGCTTGGCTCCCAAACACGTGTTTTCAC  350

seq1  CATGCCCTTAATTATTCCTGGTAGTTACTTTCTATGAGGCCACTGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTTAATTATTCCTGGTAGTTACTTTCTATGAGGCCACTGTGGAT  400

seq1  ATATAGTTAATGGGTGCTAAATCCTTGCTCCTGGAGAGGTAAACAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTAATGGGTGCTAAATCCTTGCTCCTGGAGAGGTAAACAGAGTG  450

seq1  GGTCCCTGGGAAACTCTGGTCACAGTTTACTAACCCATCAATACAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGGGAAACTCTGGTCACAGTTTACTAACCCATCAATACAAAACC  500

seq1  TTATTTTATGTGTGTTTCTGTTCAAAGCACTTCATTTACTGTAAACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTGTGTTTCTGTTCAAAGCACTTCATTTACTGTAAACTGTT  550

seq1  GACTCCTTAACATTGAACTCACTCAACCAGATTATAGTTTATCCCTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTAACATTGAACTCACTCAACCAGATTATAGTTTATCCCTAAAT  600

seq1  ACAGCTCATCTCTGGCAGCCTTTTGTACTGAGAAACACTAGATTGCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCATCTCTGGCAGCCTTTTGTACTGAGAAACACTAGATTGCATTT  650

seq1  CAGCACTGTGCCTAGGGGCATTGCACACAGTAAAAAAAATAAAATAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGTGCCTAGGGGCATTGCACACAGTAAAAAAAATAAAATAAAAT  700

seq1  AAAATAATAATAATAATAATAATAAACAAAAACGGATAAAAATGCCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAATAATAATAATAATAAACAAAAACGGATAAAAATGCCAACT  750

seq1  CTCTGCCACCAAGAGACCCCCAAAAAGACTCATTTACAGCACAAAGCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACCAAGAGACCCCCAAAAAGACTCATTTACAGCACAAAGCAAG  800

seq1  AAGAAAGTATGTCATGTTCAACCTTAGAAAAGAAAATACTTATCAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTATGTCATGTTCAACCTTAGAAAAGAAAATACTTATCAAATGA  850

seq1  CTTCAAATTTTTGTCACTCTGTACATATCAGCAAAATAGCAGGAAAGCAT  900
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  CTTCAAATTTTTGTCACTCTGTACATATCAGC-AAATAGCA-GAAAGCAT  898

seq1  CATCCCCGATTGGCTTTGGATCAATTTCAGTGAGTGAGTGAGTAAATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCGATTGGCTTTGGATCAATTTCAGTGAGTGAGTGAGTAAATTTT  948

seq1  CAAGTCGAGAATCTGTGATGGATGACGAGGGCTGACTGTGTGTGGAATGG  1000
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  C-AGTCGAGAATCTGTGATGGATGACGAGGGCTGACTGTGTGTGG-ATGG  996

seq1  GCTGACTATGCATGGAATGCCTCTGGAAGTACTCATCTTCCAGAGAGAGA  1050
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GCTGACTATGCATGGAATGCCTCTGG-AGTACTCATCTT-CAGAGAGAGA  1044

seq1  GCCACAGACTTTCCACGTTCTTCCAAAGACATCACAAAAACCCTTCCTGC  1100
      ||||||||||||||||||||||||||  ||||  ||||||||||| ||||
seq2  GCCACAGACTTTCCACGTTCTTCCAA--ACAT--CAAAAACCCTT-CTGC  1089

seq1  ATGGAATTTCCCAG-AGAGCATTGCAGCTTAG  1131
      |||||||||||||| |||||| ||||||||||
seq2  ATGGAATTTCCCAGAAGAGCA-TGCAGCTTAG  1120