BAC Information

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BAC

Clone NameB6Ng01-104J20
Chromosome10 (Build37)
Map Location 91,644,677 - 91,771,494
singlet/doubletdoublet
Overlap geneLOC667203
Upstream geneLOC100041769, LOC100041799
Downstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104J20.bB6Ng01-104J20.g
ACCDH912859DH912860
length1,0741,176
definitionDH912859|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J20, 5' end.DH912860|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,770,420 - 91,771,494)(91,644,677 - 91,645,866)
sequence
gaattctgccctaccttcctcctgggtgactttggcacagagcccccact
acaatagaaagctcgaacaccactggccgagagtacctctgagtatggaa
atctatgaggaatttggtaccttgactttgactcggaactcttgtttatg
atttgagtgtctcgttatggtcaaagcaaaggatgagaacttaacacatc
agtgttgttctagttgtaaatcaagcagatgggtaacttccaaaaagtca
ggtagctgttttgtaatctgattttgaatggcatggctgcatcagaagat
aactcctctgacccagagttttaagggattgtcaattgtttactgatgga
ttgattgttagctatacaactagtgcactcttccttaggatatcgttttt
cttttctattgttttccctggaagttacaaacagaatttcagtaaaaaca
aaccttgcaagattcctaagaaagagccaatgtaggaagcaggatctgaa
aagatgcatgctgtggtagaatgaccacgggctccatagactgccaaagt
ttttcgtcttcctcctcctcttccttctcctcctcccccctcttcctccc
ttccttcttgctcttttgcatttattaaaatttaaccatggcctgaatct
gttaatagtgacctctgctgttcagaagtagtactacaaggatccagaga
tgatagcaattaggctttgttggattagggagaatggatgaactggagtt
atgtggaaaatgtaagactcactacaaaattatctgcttacaaaggagat
ggcagcgtgggaattgctagtccatccaggagaagaatttgagtgtttgt
ctcattgccaggttgtttgatgcttggtgttatccttgacaccgcccctc
tagatggcatgggatagttagaactgggaagccaactagatctcagaatg
acacaggtcattttcagtcttgacaaatgaacatcatacgtgtcactagt
ttgtctgggttacctgaaataaaaccttgttattttttgaaggaacaaca
aaatgcagtaaagtatataatgcc
gaattctttagattcagaatgttagttcttatagtctttgaaaacaaagg
acaaaatacatattttaagaagaatttggttttatttattaatcggtatt
gaaaataatcacatataatgtcctgattattaaaatttagttgaaagaaa
attgagccaaatgaatgtctaataagtgcagataccctcgcatcccacag
tgagtagttatttctgatcataatgaattagggacatttcaagatctaat
atggcaagctattgttcttcacatattattctttataatacaaatataag
gaaaagacctaagtcatccaacatgagagataaaattggtacaagacaga
ttcctggattttttacgattgtagattgacgatctcactgtgcagcttag
gttggctgccctagttttatctatgctgttgtaataaaacactttaagca
aatgcaacataagagatgataaggtttgtttcagctcacaggctacagcc
cagtactgaggggagtcagcaggatcttaaaggggaaactacagaaacat
agcttcctggctggttcttaggctcattctagtgatagcagtctctattc
ctaaaaaatatttatttcagttaaaaatgatgtgtatgttggtgacctag
agctggaggcccaggtggtttaagctggatggcaaaggtgcagggaacct
aactaatgtcctctgcaaaagccattcacactctttattattatcatcat
catcatcattaatcttacttttacagtctagttgctattcccctctcatt
ctgccctctgatattttctcattccgttcctccccaacccgtctccaaga
ggatgtcccccacccccatacacagccccacacccacacccacacccaca
ggcctcccgattccctagggtctcaagtctcttgagagtaggtacaactt
ctccattgaggccagaccaggcagtcctctgctgttgtgctgggagccta
tatcagctgatgtatgctgcctagtggtggctcagtgtctgagagatctg
ggtatcagaacatcctggaccccttcctgcagaatgccttccgggccatt
cagctaagaaatcgtgactgaagactcccttctagtggaatatgaacttg
ttaagctaccagttaaactactgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_91770420_91771494
seq2: B6Ng01-104J20.b_47_1120 (reverse)

seq1  GGCATATATA-ACTTTACTGCATTTTGTTGTTCCTTCAAAAAATAACAAG  49
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCAT-TATATACTTTACTGCATTTTGTTGTTCCTTCAAAAAATAACAAG  49

seq1  GTTTTATTTCAGGTAACCCAGACAAACTAGTGACACGTAATGATG-TCAT  98
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GTTTTATTTCAGGTAACCCAGACAAACTAGTGACACGT-ATGATGTTCAT  98

seq1  TTGTTCAAGACTGAAAATGACCTGTGTCATTCTGAGATCTAGTTGGCTTC  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-TCAAGACTGAAAATGACCTGTGTCATTCTGAGATCTAGTTGGCTTC  147

seq1  CCAGTTCTAACTATCCCATGCCATCTAGAGGGGCGGTGTCAAGGATAACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTAACTATCCCATGCCATCTAGAGGGGCGGTGTCAAGGATAACA  197

seq1  CCAAGCATCAAACAACCTGGCAATGAGACAAACACTCAAATTCTTCTCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATCAAACAACCTGGCAATGAGACAAACACTCAAATTCTTCTCCT  247

seq1  GGATGGACTAGCAATTCCCACGCTGCCATCTCCTTTGTAAGCAGATAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGACTAGCAATTCCCACGCTGCCATCTCCTTTGTAAGCAGATAATT  297

seq1  TTGTAGTGAGTCTTACATTTTCCACATAACTCCAGTTCATCCATTCTCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTGAGTCTTACATTTTCCACATAACTCCAGTTCATCCATTCTCCC  347

seq1  TAATCCAACAAAGCCTAATTGCTATCATCTCTGGATCCTTGTAGTACTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAACAAAGCCTAATTGCTATCATCTCTGGATCCTTGTAGTACTAC  397

seq1  TTCTGAACAGCAGAGGTCACTATTAACAGATTCAGGCCATGGTTAAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACAGCAGAGGTCACTATTAACAGATTCAGGCCATGGTTAAATTT  447

seq1  TAATAAATGCAAAAGAGCAAGAAGGAAGGGAGGAAGAGGGGGGAGGAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGCAAAAGAGCAAGAAGGAAGGGAGGAAGAGGGGGGAGGAGGA  497

seq1  GAAGGAAGAGGAGGAGGAAGACGAAAAACTTTGGCAGTCTATGGAGCCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAGGAGGAGGAAGACGAAAAACTTTGGCAGTCTATGGAGCCCG  547

seq1  TGGTCATTCTACCACAGCATGCATCTTTTCAGATCCTGCTTCCTACATTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTCTACCACAGCATGCATCTTTTCAGATCCTGCTTCCTACATTG  597

seq1  GCTCTTTCTTAGGAATCTTGCAAGGTTTGTTTTTACTGAAATTCTGTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCTTAGGAATCTTGCAAGGTTTGTTTTTACTGAAATTCTGTTTG  647

seq1  TAACTTCCAGGGAAAACAATAGAAAAGAAAAACGATATCCTAAGGAAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCCAGGGAAAACAATAGAAAAGAAAAACGATATCCTAAGGAAGAG  697

seq1  TGCACTAGTTGTATAGCTAACAATCAATCCATCAGTAAACAATTGACAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAGTTGTATAGCTAACAATCAATCCATCAGTAAACAATTGACAAT  747

seq1  CCCTTAAAACTCTGGGTCAGAGGAGTTATCTTCTGATGCAGCCATGCCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAAACTCTGGGTCAGAGGAGTTATCTTCTGATGCAGCCATGCCAT  797

seq1  TCAAAATCAGATTACAAAACAGCTACCTGACTTTTTGGAAGTTACCCATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATCAGATTACAAAACAGCTACCTGACTTTTTGGAAGTTACCCATC  847

seq1  TGCTTGATTTACAACTAGAACAACACTGATGTGTTAAGTTCTCATCCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGATTTACAACTAGAACAACACTGATGTGTTAAGTTCTCATCCTTT  897

seq1  GCTTTGACCATAACGAGACACTCAAATCATAAACAAGAGTTCCGAGTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGACCATAACGAGACACTCAAATCATAAACAAGAGTTCCGAGTCAA  947

seq1  AGTCAAGGTACCAAATTCCTCATAGATTTCCATACTCAGAGGTACTCTCG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGTACCAAATTCCTCATAGATTTCCATACTCAGAGGTACTCTCG  997

seq1  GCCAGTGGTGTTCGAGCTTTCTATTGTAGTGGGGGCTCTGTGCCAAAGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGTGTTCGAGCTTTCTATTGTAGTGGGGGCTCTGTGCCAAAGTC  1047

seq1  ACCCAGGAGGAAGGTAGGGCAGAATTC  1075
      |||||||||||||||||||||||||||
seq2  ACCCAGGAGGAAGGTAGGGCAGAATTC  1074

seq1: chr10_91644677_91645866
seq2: B6Ng01-104J20.g_68_1243

seq1  GAATTCTTTAGATTCAGAATGTTAGTTCTTATAGTCTTTGAAAACAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGATTCAGAATGTTAGTTCTTATAGTCTTTGAAAACAAAGG  50

seq1  ACAAAATACATATTTTAAGAAGAATTTGGTTTTATTTATTAATCGGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATACATATTTTAAGAAGAATTTGGTTTTATTTATTAATCGGTATT  100

seq1  GAAAATAATCACATATAATGTCCTGATTATTAAAATTTAGTTGAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATCACATATAATGTCCTGATTATTAAAATTTAGTTGAAAGAAA  150

seq1  ATTGAGCCAAATGAATGTCTAATAAGTGCAGATACCCTCGCATCCCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCCAAATGAATGTCTAATAAGTGCAGATACCCTCGCATCCCACAG  200

seq1  TGAGTAGTTATTTCTGATCATAATGAATTAGGGACATTTCAAGATCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTTATTTCTGATCATAATGAATTAGGGACATTTCAAGATCTAAT  250

seq1  ATGGCAAGCTATTGTTCTTCACATATTATTCTTTATAATACAAATATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGCTATTGTTCTTCACATATTATTCTTTATAATACAAATATAAG  300

seq1  GAAAAGACCTAAGTCATCCAACATGAGAGATAAAATTGGTACAAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACCTAAGTCATCCAACATGAGAGATAAAATTGGTACAAGACAGA  350

seq1  TTCCTGGATTTTTTACGATTGTAGATTGACGATCTCACTGTGCAGCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGATTTTTTACGATTGTAGATTGACGATCTCACTGTGCAGCTTAG  400

seq1  GTTGGCTGCCCTAGTTTTATCTATGCTGTTGTAATAAAACACTTTAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTGCCCTAGTTTTATCTATGCTGTTGTAATAAAACACTTTAAGCA  450

seq1  AATGCAACATAAGAGATGATAAGGTTTGTTTCAGCTCACAGGCTACAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACATAAGAGATGATAAGGTTTGTTTCAGCTCACAGGCTACAGCC  500

seq1  CAGTACTGAGGGGAGTCAGCAGGATCTTAAAGGGGAAACTACAGAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGAGGGGAGTCAGCAGGATCTTAAAGGGGAAACTACAGAAACAT  550

seq1  AGCTTCCTGGCTGGTTCTTAGGCTCATTCTAGTGATAGCAGTCTCTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTGGCTGGTTCTTAGGCTCATTCTAGTGATAGCAGTCTCTATTC  600

seq1  CTAAAAAATATTTATTTCAGTTAAAAATGATGTGTATGTTGGTGACCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAATATTTATTTCAGTTAAAAATGATGTGTATGTTGGTGACCTAG  650

seq1  AGCTGGAGGCCCAGGTGGTTTAAGCTGGATGGCAAAGGTGCAGGGAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGGCCCAGGTGGTTTAAGCTGGATGGCAAAGGTGCAGGGAACCT  700

seq1  AACTAATGTCCTCTGCAAAAGCCATTCACACTCTTTATTATTATCATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGTCCTCTGCAAAAGCCATTCACACTCTTTATTATTATCATCAT  750

seq1  CATCATCATTAATCTTACTTTTACAGTCTAGTTGCTATTCCCCTCTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCATTAATCTTACTTTTACAGTCTAGTTGCTATTCCCCTCTCATT  800

seq1  CTGCCCTCTGATATTTTCTCATTCCGTTCCTCCCCAACCCGTCTCCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCTGATATTTTCTCATTCCGTTCCTCCCCAACCCGTCTCCAAGA  850

seq1  GGATGT-CCCCACCCCCATACACAGCCCCACACCCACACCCACACCCACA  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCCCCACCCCCATACACAGCCCCACACCCACACCCACACCCACA  900

seq1  GGCCTCCCGATTCCCTAGGGTCTCAAGTCTCTTGAGAGTTAGGTACAACT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCCTCCCGATTCCCTAGGGTCTCAAGTCTCTTGAGAG-TAGGTACAACT  949

seq1  TCTCCCATTGAGGCCAGACCAGGCAGTCCTCTGCTGTATGTGCTGGGAGC  999
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCT-CCATTGAGGCCAGACCAGGCAGTCCTCTGCTGT-TGTGCTGGGAGC  997

seq1  CTCATATCAGCTGATGTATGCTGCCTAGTTGGTGGCTCAGTGTCTGAGAG  1049
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CT-ATATCAGCTGATGTATGCTGCCTAG-TGGTGGCTCAGTGTCTGAGAG  1045

seq1  ATCTTGGGTATCAAGACCATCCTGGACCCCCTTCCCTGCAGACATGCCTT  1099
      ||| |||||||| ||| |||||||||||||  | |||||||| |||||||
seq2  ATC-TGGGTATC-AGAACATCCTGGACCCC--TTCCTGCAGA-ATGCCTT  1090

seq1  CAGGCCAATCCAGTCTAAGAAATCTGTCAACTG-AGACTCCCTTCTTAGG  1148
      | || | || ||| |||||||||| ||  |||| ||||||||||| ||| 
seq2  CCGGGCCATTCAG-CTAAGAAATC-GT-GACTGAAGACTCCCTTC-TAGT  1136

seq1  TGATTTTAGACTTTGTTAAGCTTACAGTTAAATCTACTGCTG  1190
       || | | ||  ||||||||||  |||||||| |||||||||
seq2  GGAATAT-GAACTTGTTAAGCTACCAGTTAAA-CTACTGCTG  1176