BAC Information

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BAC

Clone NameB6Ng01-104N07
Chromosome10 (Build37)
Map Location 100,384,486 - 100,511,086
singlet/doubletdoublet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104N07.bB6Ng01-104N07.g
ACCDH913016DH913017
length1,078328
definitionDH913016|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N07, 5' end.DH913017|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,510,004 - 100,511,086)(100,384,486 - 100,384,813)
sequence
gaattccatggcagctccctgtaaaatagggtggcatctgggaccctgag
aagcaggagacacatgcctccagaggaccctccatctgaaataagggact
tcctgcagcaggccaggatggaaacatctcagtagcccaaggcggctcta
tgtaaaaaacaattgttccaatttttcctaaccttagccctgtacaatgg
ctgtatacattttatttgtgcatggctgattttcacttggtctgggtgta
catagttattctattatatctgaactttctatttctttctccttctgctc
tggtgaattctgtgaaactaggtgttccttgatgtaatgattcttaaaca
attaaaaattgaggcataggggcacaatattgtcctaatgacccaggtgt
atattgtgtgttctcttcttggaaacaatgtaataactgcacattaatct
ggaattaatgcttgacttgcaaagaaagtttaaagaagttattagaaaat
gaagtagagccaacattggaattggaagaaagaaagaaaaaactattgaa
gttataaaataagttttgcataatatttaagagtagttcacagataaaca
agaataaaatgcataaaattatatactagtaaaattaagtcaaaaacata
aaatgactcctaggagcgtcatcgtctgcactgtgtagaagcagacttaa
gggttgacttgattctttctagcaactgcttggcaggtttgctcatgtca
tttatcattagaggttcaagaaaattcaagtagctgacctcagagctctg
agctctgaagcataataagttaaaagttaagtttaaataatgataagttt
gcaattattattatttgggcaacaggactaggaatagggaaagcttgaaa
ctttgaggaacaattttaatccataattctttggggtatgtggttattct
ttttaatttgatttgccaatgatatacaatttctttccatctgctttgga
gtatcagtaaagtctagggcaagaaaagggccagagagcaagtgaaggct
tgtggggtaaatgtggaagatgagtgaa
taaagcggttacatctttagactcctttaggcctgatgatctcaaattgc
ctcattctccaaggctataaaagtggcccaattctggtgctggaaagatg
gctgagtccttaagggtaattaactgttcttctagagaatgcaggttctt
ctagcactcacatggcagttaaaacagtctataactccaagtctagggga
tcagacacttagacagatacacatgtgggcaaaacaccaacatacagaaa
ataaagataagcaaatcataaaatatggcacaattaattttggtggtggt
ggttttgttttgtttgtttggggggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100510004_100511086
seq2: B6Ng01-104N07.b_49_1126 (reverse)

seq1  TTCACTCAATCTCCACATTTACCCCACAAGCTCTCAACTTGCTCTCTGGC  50
      ||||||||   |||||||||||||||||||| ||  ||||||||||||||
seq2  TTCACTCATCTTCCACATTTACCCCACAAGC-CTTCACTTGCTCTCTGGC  49

seq1  CCTTTTCTTGCCCTAGACTTTTACTGATACTCCAAAAGCAGATGGAAAGA  100
      |||||||||||||||||| |||||||||||||| ||||||||||||||| 
seq2  CCTTTTCTTGCCCTAGAC-TTTACTGATACTCC-AAAGCAGATGGAAAG-  96

seq1  AAATTGTATAATCATTGGCAAATCAAATTAAAAAGAATAACCACATACCC  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAT-ATCATTGGCAAATCAAATTAAAAAGAATAACCACATACCC  145

seq1  CAAAGAATTATGGATTAAAATTGTTCCTCAAAGTTTCAAGCTTTCCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATTATGGATTAAAATTGTTCCTCAAAGTTTCAAGCTTTCCCTAT  195

seq1  TCCTAGTCCTGTTGCCCAAATAATAATAATTGCAAACTTATCATTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCCTGTTGCCCAAATAATAATAATTGCAAACTTATCATTATTTA  245

seq1  AACTTAACTTTTAACTTATTATGCTTCAGAGCTCAGAGCTCTGAGGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTTTTAACTTATTATGCTTCAGAGCTCAGAGCTCTGAGGTCAG  295

seq1  CTACTTGAATTTTCTTGAACCTCTAATGATAAATGACATGAGCAAACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGAATTTTCTTGAACCTCTAATGATAAATGACATGAGCAAACCTG  345

seq1  CCAAGCAGTTGCTAGAAAGAATCAAGTCAACCCTTAAGTCTGCTTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGTTGCTAGAAAGAATCAAGTCAACCCTTAAGTCTGCTTCTACA  395

seq1  CAGTGCAGACGATGACGCTCCTAGGAGTCATTTTATGTTTTTGACTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGACGATGACGCTCCTAGGAGTCATTTTATGTTTTTGACTTAAT  445

seq1  TTTACTAGTATATAATTTTATGCATTTTATTCTTGTTTATCTGTGAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGTATATAATTTTATGCATTTTATTCTTGTTTATCTGTGAACTA  495

seq1  CTCTTAAATATTATGCAAAACTTATTTTATAACTTCAATAGTTTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAATATTATGCAAAACTTATTTTATAACTTCAATAGTTTTTTCTT  545

seq1  TCTTTCTTCCAATTCCAATGTTGGCTCTACTTCATTTTCTAATAACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCAATTCCAATGTTGGCTCTACTTCATTTTCTAATAACTTCT  595

seq1  TTAAACTTTCTTTGCAAGTCAAGCATTAATTCCAGATTAATGTGCAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTCTTTGCAAGTCAAGCATTAATTCCAGATTAATGTGCAGTTA  645

seq1  TTACATTGTTTCCAAGAAGAGAACACACAATATACACCTGGGTCATTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGTTTCCAAGAAGAGAACACACAATATACACCTGGGTCATTAGG  695

seq1  ACAATATTGTGCCCCTATGCCTCAATTTTTAATTGTTTAAGAATCATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTGTGCCCCTATGCCTCAATTTTTAATTGTTTAAGAATCATTAC  745

seq1  ATCAAGGAACACCTAGTTTCACAGAATTCACCAGAGCAGAAGGAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAACACCTAGTTTCACAGAATTCACCAGAGCAGAAGGAGAAAGA  795

seq1  AATAGAAAGTTCAGATATAATAGAATAACTATGTACACCCAGACCAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGTTCAGATATAATAGAATAACTATGTACACCCAGACCAAGTG  845

seq1  AAAATCAGCCATGCACAAATAAAATGTATACAGCCATTGTACAGGGCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGCCATGCACAAATAAAATGTATACAGCCATTGTACAGGGCTAA  895

seq1  GGTTAGGAAAAATTGGAACAATTGTTTTTTACATAGAGCCGCCTTGGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGAAAAATTGGAACAATTGTTTTTTACATAGAGCCGCCTTGGGCT  945

seq1  ACTGAGATGTTTCCATCCTGGCCTGCTGCAGGAAGTCCCTTATTTCAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATGTTTCCATCCTGGCCTGCTGCAGGAAGTCCCTTATTTCAGAT  995

seq1  GGAGGGTCCTCTGGAGGCATGTGTCTCCTGCTTCTCAGGGTCCCAGATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTCCTCTGGAGGCATGTGTCTCCTGCTTCTCAGGGTCCCAGATGC  1045

seq1  CACCCTATTTTACAGGGAGCTGCCATGGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  CACCCTATTTTACAGGGAGCTGCCATGGAATTC  1078

seq1: chr10_100384486_100384813
seq2: B6Ng01-104N07.g_76_403

seq1  TAAAGCGGTTACATCTTTAGACTCCTTTAGGCCTGATGATCTCAAATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGGTTACATCTTTAGACTCCTTTAGGCCTGATGATCTCAAATTGC  50

seq1  CTCATTCTCCAAGGCTATAAAAGTGGCCCAATTCTGGTGCTGGAAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTCCAAGGCTATAAAAGTGGCCCAATTCTGGTGCTGGAAAGATG  100

seq1  GCTGAGTCCTTAAGGGTAATTAACTGTTCTTCTAGAGAATGCAGGTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCCTTAAGGGTAATTAACTGTTCTTCTAGAGAATGCAGGTTCTT  150

seq1  CTAGCACTCACATGGCAGTTAAAACAGTCTATAACTCCAAGTCTAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTCACATGGCAGTTAAAACAGTCTATAACTCCAAGTCTAGGGGA  200

seq1  TCAGACACTTAGACAGATACACATGTGGGCAAAACACCAACATACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACTTAGACAGATACACATGTGGGCAAAACACCAACATACAGAAA  250

seq1  ATAAAGATAAGCAAATCATAAAATATGGCACAATTAATTTTGGTGGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATAAGCAAATCATAAAATATGGCACAATTAATTTTGGTGGTGGT  300

seq1  GGTTTTGTTTTGTTTGTTTGGGGGGATA  328
      ||||||||||||||||||||||||||||
seq2  GGTTTTGTTTTGTTTGTTTGGGGGGATA  328