BAC Information

Click to search

BAC

Clone NameB6Ng01-105B01
Chromosome5 (Build37)10 (Build37)
Map Location 61,965,259 - 61,966,413104,054,471 - 104,054,954
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041498, LOC666597, EG666610
Downstream geneLOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105B01.bB6Ng01-105B01.g
ACCDH913188DH913189
length1,1201,027
definitionDH913188|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B01, 5' end.DH913189|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,965,259 - 61,966,413)(104,054,471 - 104,054,954)
sequence
gaattctattatcttcttaagataatatttaattgtcattttcttgtgct
ttcaggtgtgctaggatatctagtgattactctaacaggattcttttgtt
tctgatggtgccaaatacccaggttttggtttattgtgttcttatagtgg
cctttagccatctatttgtccctagctttggcagaactgatggcagcagt
cctctggcactgctggtagagctgatagtcctaatagttgtaggtcactg
ggatgtcaggtagagctaactgtccagggtggaagtaggcttccagaaat
gatggaagaacagtagtcctgttggctttaggcctctggttgttccagat
accagaagaactccaggcatgccagccatgcttgatggtccatgatagct
tcaggcctccaggattgttggtagagctatggactcaaagacagagcaca
gagattacagggcagacctcacatggctgctaggcttgtcagtggaacca
gaggattaggaattggggacctcatctggttgtcctgggtggcagcaggc
cttcagggatgcaggcaaagctgaggtccagtgaaaagagtgcctagggt
acagagctgacctcaccactgctgggtttccagtattcaagaattaatgt
agaactataccttttcttgaatttcatgagttatatattttcttttcctt
aatttttattttcattgttctcattgttttaattaattaactttacatct
gattttagctcctctaccctcatctcctccaagtccctctttctcatctc
tcctctcccaatccttcctctttatcctcatgaatgaggagtcctcccat
ggatataagcctgtttttgcctaccaagtcagagtacatcagttcctact
gaggctagataagacaaacagtcatctagctagtcagtcagttaggggaa
agggattcagaggcagacacagagtcagacacagctatctgctatcaggg
tctcacattaaaaaagaaaacacaaaaaacaggtgcaatttctatatcta
tgtaaggatagtctgccaggatgttctctatgagtttcagtctcagggag
ccaatgtgcctatagttgat
gaattctttgttcagctctgagccccatttttgaatggggttatttgatt
ttctggagtccaccttcttgagttctttatataaatattggatattagtc
ccctatttgtgatcaaaactgcatgctactggtatagtgacagacaagta
gaccaatggaaaagaattgaagacccagagatgaatccacacacctatgg
tcacttgatctttgaaaagggagctaaaatcatccagtggaaaaaagaca
gcattttcaacaaatcgtgctggcacaactggcggttatcatgtagaaga
atgcgaattgatccatttctatctccttgtactaaggtcaaatctaagtg
gattaagaaactccacataaaaccagagacactgaaacttatagaggaga
aagtagggaaaatcctcgaagatatgggtacaggggaaaaattcctgaat
tgaacagcaatggcttgtgctgtaagatcaagaatcgataaatgggacct
cataaaattgcaaagcttctgcaaagcaaaagacaccgtcaataagacaa
aaaggccaccaacagattgggaaaggatctttacctatcgatgaacattt
atattataccaaataatacctctcaaaaataattgtgtcagaagtcctgc
caatacatctaagaggaccttatttaatttaagatctgttagaaagaaat
actattaaacagagaaaattacaagagtcttgctttacataatattatta
atattaaaataaaaagtagagatgaaactacatggaagaagtcatgtgac
catcactgaaggcatatatactccatcgaaagcaaataattgcttttaga
gattagaaaatgtgtggagagccctgcagtgagcaatcgccattataaga
tggccctggcttccactgcgcctaactagtaaacaagccttatgcgcaag
tgcagagtgaactcatccctagtcactgctcatctggggcgtattaatgg
gggtgatgggcagcagattcaggagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61965259_61966413
seq2: B6Ng01-105B01.b_46_1165

seq1  GAATTCTATTATCTTCTTAAGATAATATTTAA-GGTCATTTTCTTGTGCT  49
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GAATTCTATTATCTTCTTAAGATAATATTTAATTGTCATTTTCTTGTGCT  50

seq1  TTCAGGTGTGCTAGGATATCTAGTGATTACTCTAACAGGATTCTTTTGTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGTGCTAGGATATCTAGTGATTACTCTAACAGGATTCTTTTGTT  100

seq1  TCTGATGGTGCCAAATACCCAGGTTTTGGTTTATTGTGTTCTTATAGTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGTGCCAAATACCCAGGTTTTGGTTTATTGTGTTCTTATAGTGG  150

seq1  CCTTTAGCCATCTATTTGTCCCTAGCTTTGGCAGAACTGATGGCAGCAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCCATCTATTTGTCCCTAGCTTTGGCAGAACTGATGGCAGCAGT  200

seq1  CCTCTGGCACTGCTGGTAGAGCTGATAGTCCTAATAGTTGTAGGTCACTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCACTGCTGGTAGAGCTGATAGTCCTAATAGTTGTAGGTCACTG  250

seq1  GGATGTCAGGTAGAGCTAACTGTCCAGGGTGGAAGTAGGCTTCCAGAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAGGTAGAGCTAACTGTCCAGGGTGGAAGTAGGCTTCCAGAAAT  300

seq1  GATGGAAGAACAGTAGTCCTGTTGGCTTTAGGCCTCTGGTTGTTCCAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGAACAGTAGTCCTGTTGGCTTTAGGCCTCTGGTTGTTCCAGAT  350

seq1  ACCAGAAGAACTCCAGGCATGCCAGCCATGCTTGATGGTCCATGATAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGAACTCCAGGCATGCCAGCCATGCTTGATGGTCCATGATAGCT  400

seq1  TCAGGCCTCCAGGATTGTTGGTAGAGCTATGGACTCAAAGACAGAGCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTCCAGGATTGTTGGTAGAGCTATGGACTCAAAGACAGAGCACA  450

seq1  GAGATTACAGGGCAGACCTCACATGGCTGCTAGGCTTGTCAGTGGAACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACAGGGCAGACCTCACATGGCTGCTAGGCTTGTCAGTGGAACCA  500

seq1  GAGGATTAGGAATTGGGGACCTCATCTGGTTGTCCTGGGTGGCAGCAGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTAGGAATTGGGGACCTCATCTGGTTGTCCTGGGTGGCAGCAGGC  550

seq1  CTTCAGGGATGCAGGCAAAGCTGAGGTCCAGTGAAAAGAGTGCCTAGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGATGCAGGCAAAGCTGAGGTCCAGTGAAAAGAGTGCCTAGGGT  600

seq1  ACAGAGCTGACCTCACCACTGCTGGGTTTCCAGTATTCAAGAATTAATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTGACCTCACCACTGCTGGGTTTCCAGTATTCAAGAATTAATGT  650

seq1  AGAACTATACCTTTTCTTGAATTTCATGAGTTATATATTTTCTTTTCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATACCTTTTCTTGAATTTCATGAGTTATATATTTTCTTTTCCTT  700

seq1  AATTTTTATTTTCATTGTTCTCATTGTTTTAATTAATTAACTTTACATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTTCATTGTTCTCATTGTTTTAATTAATTAACTTTACATCT  750

seq1  GATTTTAGCTCCTCTACCCTCATCTCCTCCAAGTCCCTCTTTCTCATCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGCTCCTCTACCCTCATCTCCTCCAAGTCCCTCTTTCTCATCTC  800

seq1  TCCTCTCCCAATCCTTCCTCTTTATCCTCATGAATGAGGAGTCCTCCCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCCAATCCTTCCTCTTTATCCTCATGAATGAGGAGTCCTCCCAT  850

seq1  GGATATAAGCCTGTTTTTGCCTACCAAGTCAGAGTACATCAGTTCCTACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAAGCCTGTTTTTGCCTACCAAGTCAGAGTACATCAGTTCCTACT  900

seq1  GAGGCTAGATAAGACAAACAGTCATCTAGCTAGTCAGTCAGTTAGGGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGATAAGACAAACAGTCATCTAGCTAGTCAGTCAGTTAGGGGAA  950

seq1  AGGGATTCAGAGGCAGACAACAGAGTCAGACACAGCTATCTGCTATCAGG  999
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  AGGGATTCAGAGGCAGAC-ACAGAGTCAGACACAGCTATCTGCTATCA-G  998

seq1  GGTCTCACATTAAAAAAAAAAAAAAAAAAAAAACAACAAAAAAAAAACAA  1049
      ||||||||||||||||| |||| | ||||||                  |
seq2  GGTCTCACATTAAAAAAGAAAACACAAAAAA-----------------CA  1031

seq1  GGTGCACATTTCTTATATCTATGTAAAGGGATTAGTTCTGCCCCAGGAAT  1099
      |||||| ||||| |||||||||||||  ||| ||| ||||  ||||| ||
seq2  GGTGCA-ATTTC-TATATCTATGTAA--GGA-TAG-TCTG--CCAGG-AT  1072

seq1  GTTCTCTAATTGGTGTTTCAGTCTCAGTGAGCCACTATGTGCCCTAATAA  1149
      ||||||||    | ||||||||||||| ||||||  ||||| ||||   |
seq2  GTTCTCTA---TGAGTTTCAGTCTCAGGGAGCCA--ATGTG-CCTA--TA  1114

seq1  GTTGAT  1155
      ||||||
seq2  GTTGAT  1120

seq1: chr10_104054471_104054954
seq2: B6Ng01-105B01.g_173_655 (reverse)

seq1  GATAGGTAAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTG  50
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTG  50

seq1  ACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTT  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTT  100

seq1  ATCAACTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATT  150
      ||| | |||  ||||||||||||||||||||||||||| |||||||||||
seq2  ATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCAATTCAGGAATT  150

seq1  TTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATA  200
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TTTCCCCTGTACCCATATCTTCGAGGATTTTCCCTACTTTCTCCTCTATA  200

seq1  AGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTT  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTTTCAGTGTCTCTGGTTTTATGTGGAGTTTCTTAATCCACTTAGATTT  250

seq1  TACCTTAGTACAAGGAGATAGTAATTGATCAATTCACAATCTTCTACATG  300
       |||||||||||||||||||| ||| ||||||||| || |||||||||||
seq2  GACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATG  300

seq1  ATAACAGCCAGTTGTGCCAGCATGATTTGTTGAAAATGCTGTCTTTTTTT  350
      ||||| |||||||||||||||| |||||||||||||||||||| ||||||
seq2  ATAACCGCCAGTTGTGCCAGCACGATTTGTTGAAAATGCTGTC-TTTTTT  349

seq1  CCACTGGATAGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGT  400
      |||||||||  ||||||||||||| |||||||||||||||||||||||||
seq2  CCACTGGATGATTTTAGCTCCCTTTTCAAAGATCAAGTGACCATAGGTGT  399

seq1  GTGGGTTCATCTCTGGATCTTCAATTCTGTTCCATTGGTCTACTTGTCTG  450
      |||| ||||||||||| ||||||||||| |||||||||||||||||||||
seq2  GTGGATTCATCTCTGGGTCTTCAATTCTTTTCCATTGGTCTACTTGTCTG  449

seq1  TCGCTATACAAGTACCATGCAGTTTTTATCACAA  484
      || |||||| |||| ||||||||||| |||||||
seq2  TCACTATACCAGTAGCATGCAGTTTTGATCACAA  483