BAC Information

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BAC

Clone NameB6Ng01-106L03
Chromosome10 (Build37)
Map Location 68,431,014 - 68,573,322
singlet/doubletdoublet
Overlap genenone
Upstream genePlekhk1, Arid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26
Downstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734, 5730416O20Rik, Ccdc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L03.bB6Ng01-106L03.g
ACCDH914359DH914360
length3351,080
definitionDH914359|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L03, 5' end.DH914360|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,572,988 - 68,573,322)(68,431,014 - 68,432,102)
sequence
ctcaaatggagatttcagtttggtttctttacctgttttgagtgttgaga
tagcacatcagagtgatctgcgaatgaaactgaagagcaagtgctcaaag
gcagacaactcgggccttccagaaagcagtgggctcagcagcagtctcag
gcaagacctggtggcgagggatgagttcatctgggctccgttcccagaac
cctcagctttccctgggagaatggcgtgaagttattttacctgtcaaagg
cttgatttttttttctaaaaatatatttactttcatttattttaaatttg
tgaatgtagtgtgtgtgtgtgtgtgtgtgtctgtg
gaattcagtgctactttatcttgtcacttgtaattgtctgattaaatgaa
caccacggagatgtattaatgtaatgaagtcaaacactcaattaggtttt
attttctctcccatttttgcattgtttggcattcccgcaggatcagaagt
acaatggcgctctccctattgagttgagctccttcgtagttggcaaatat
ttattcttttatctatgtttcagctggcactgcaatgaatgggcccccat
tttccccctgtcttgactcctgttgtcacacaatatattgtgatgttgtt
gagcataacagtattttagagatgacataaatcactaatgcaagacagcc
tgtgctgaattcaaagagcgaatctctttgaaggaacagaaaacgtgtaa
agaaagggtgatgcccagaaggggctgggatgcctgcaagttggcacgga
gcttgaatacactccactgaatgctgtgacgaatcgtaaacttcctgaag
ggttaaaaataaagatccagagaaagagcgtcagcctttggggccagtac
ccttacagtggtacacagtgaagctcctaaggaactgcagggcttccaga
ttggagatctccctccagctactgcatggctgtctaacttcctgtgagtc
actaagtcactatgttttctcatagtttgtcacagagaagtaaagctagc
acaggccacttaagaaaaggagcgtctactctgactcccagctccagggg
agataggtcatcacgcaagcaccgccttaggagtgagaagtcagctgttc
acattgtctggacagtgaagaagctcagagagcaaggggagaggggcttg
cttataaaacttcaaggcccacttctactgttgtatttcatccagaaagg
atccgcctccaaaatgttcacaattttccaaacgtgccaccatcttgagt
acctaagccagtgggaaagatttcacattcagactgcaacattccctgtg
gtgttgaataggaatgtcctgccaactcgccctctcaaacacaaacacac
ccaccctgctatagactcattgtttgaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_68572988_68573322
seq2: B6Ng01-106L03.b_54_388 (reverse)

seq1  CACAGACACACACACACACACACACACTACATTCACAAATTTAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACACACACACACACACACTACATTCACAAATTTAAAATAAA  50

seq1  TGAAAGTAAATATATTTTTAGAAAAAAAAATCAAGCCTTTGACAGGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTAAATATATTTTTAGAAAAAAAAATCAAGCCTTTGACAGGTAAA  100

seq1  ATAACTTCACGCCATTCTCCCAGGGAAAGCTGAGGGTTCTGGGAACGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCACGCCATTCTCCCAGGGAAAGCTGAGGGTTCTGGGAACGGAG  150

seq1  CCCAGATGAACTCATCCCTCGCCACCAGGTCTTGCCTGAGACTGCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGAACTCATCCCTCGCCACCAGGTCTTGCCTGAGACTGCTGCTG  200

seq1  AGCCCACTGCTTTCTGGAAGGCCCGAGTTGTCTGCCTTTGAGCACTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTGCTTTCTGGAAGGCCCGAGTTGTCTGCCTTTGAGCACTTGCT  250

seq1  CTTCAGTTTCATTCGCAGATCACTCTGATGTGCTATCTCAACACTCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTCATTCGCAGATCACTCTGATGTGCTATCTCAACACTCAAAA  300

seq1  CAGGTAAAGAGACCAAACTGAAATCTCCATTTGAG  335
      |||||||||| ||||||||||||||||||||||||
seq2  CAGGTAAAGAAACCAAACTGAAATCTCCATTTGAG  335

seq1: chr10_68431014_68432102
seq2: B6Ng01-106L03.g_70_1149

seq1  GAATTCAGTGCTACTTTATCTTGTCACTTGTAATTGTCTGATTAAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTACTTTATCTTGTCACTTGTAATTGTCTGATTAAATGAA  50

seq1  CACCACGGAGATGTATTAATGTAATGAAGTCAAACACTCAATTAGGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGGAGATGTATTAATGTAATGAAGTCAAACACTCAATTAGGTTTT  100

seq1  ATTTTCTCTCCCATTTTTGCATTGTTTGGCATTCCCGCAGGATCAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTCCCATTTTTGCATTGTTTGGCATTCCCGCAGGATCAGAAGT  150

seq1  ACAATGGCGCTCTCCCTATTGAGTTGAGCTCCTTCGTAGTTGGCAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCGCTCTCCCTATTGAGTTGAGCTCCTTCGTAGTTGGCAAATAT  200

seq1  TTATTCTTTTATCTATGTTTCAGCTGGCACTGCAATGAATGGGCCCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTTATCTATGTTTCAGCTGGCACTGCAATGAATGGGCCCCCAT  250

seq1  TTTCCCCCTGTCTTGACTCCTGTTGTCACACAATATATTGTGATGTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTGTCTTGACTCCTGTTGTCACACAATATATTGTGATGTTGTT  300

seq1  GAGCATAACAGTATTTTAGAGATGACATAAATCACTAATGCAAGACAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAACAGTATTTTAGAGATGACATAAATCACTAATGCAAGACAGCC  350

seq1  TGTGCTGAATTCAAAGAGCGAATCTCTTTGAAGGAACAGAAAACGTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAATTCAAAGAGCGAATCTCTTTGAAGGAACAGAAAACGTGTAA  400

seq1  AGAAAGGGTGATGCCCAGAAGGGGCTGGGATGCCTGCAAGTTGGCACGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGTGATGCCCAGAAGGGGCTGGGATGCCTGCAAGTTGGCACGGA  450

seq1  GCTTGAATACACTCCACTGAATGCTGTGACGAATCGTAAACTTCCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATACACTCCACTGAATGCTGTGACGAATCGTAAACTTCCTGAAG  500

seq1  GGTTAAAAATAAAGATCCAGAGAAAGAGCGTCAGCCTTTGGGGCCAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAATAAAGATCCAGAGAAAGAGCGTCAGCCTTTGGGGCCAGTAC  550

seq1  CCTTACAGTGGTACACAGTGAAGCTCCTAAGGAACTGCAGGGCTTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGTGGTACACAGTGAAGCTCCTAAGGAACTGCAGGGCTTCCAGA  600

seq1  TTGGAGATCTCCCTCCAGCTACTGCATGGCTGTCTAACTTCCTGTGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATCTCCCTCCAGCTACTGCATGGCTGTCTAACTTCCTGTGAGTC  650

seq1  ACTAAGTCACTATGTTTTCTCATAG-TTGTCACAGAGAAGTAAAGCTAGC  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTAAGTCACTATGTTTTCTCATAGTTTGTCACAGAGAAGTAAAGCTAGC  700

seq1  ACAGGCCACTTAAGAAAAGGAGCGTCTACTCTGACTCCCAGCTCCAGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCACTTAAGAAAAGGAGCGTCTACTCTGACTCCCAGCTCCAGGGG  750

seq1  AGATAGGTCATCACGCAAGCACCGCCTTAGGAGTGAGAAGTCAGCTGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGTCATCACGCAAGCACCGCCTTAGGAGTGAGAAGTCAGCTGTTC  800

seq1  ACATTGTCTGGACAGTGAAGAAGCTCAGAGAGCAAGGGGAGAGGGGCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCTGGACAGTGAAGAAGCTCAGAGAGCAAGGGGAGAGGGGCTTG  850

seq1  CTTATAAAACTTCAAGGCCCACTTCTACTGTTGTATTTCATCCAGAAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAACTTCAAGGCCCACTTCTACTGTTGTATTTCATCCAGAAAGG  900

seq1  ATCCGCCTCCAAAATGTTCCACAATTTTCCAAACGGTGCCACCATCTTGA  949
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  ATCCGCCTCCAAAATGTT-CACAATTTTCCAAAC-GTGCCACCATCTTGA  948

seq1  GTACCTAAGCCAGTGGGAAAGATTTCACATTCAGACTGCAACATTCCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTAAGCCAGTGGGAAAGATTTCACATTCAGACTGCAACATTCCCTG  998

seq1  TGGTGGTTTGAATAGGAATGTCCTGCCAACCTCCGCCCCCCCCACACACA  1049
      |||||  |||||||||||||||||||||| |||   ||| | || |||||
seq2  TGGTG--TTGAATAGGAATGTCCTGCCAA-CTC--GCCCTCTCAAACACA  1043

seq1  CACACACCCCACCCCTGCTATAGACTCATGTGTTTGAATG  1089
       ||||||||   ||||||||||||||||| ||||||||||
seq2  AACACACCC--ACCCTGCTATAGACTCAT-TGTTTGAATG  1080