BAC Information

Click to search

BAC

Clone NameB6Ng01-106L17
Chromosome10 (Build37)
Map Location 119,500,504 - 119,645,232
singlet/doubletdoublet
Overlap geneGrip1, Helb, Irak3
Upstream geneLOC100042861, LOC674417, Cand1
Downstream geneTmbim4, 1190005P17Rik, Hmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L17.bB6Ng01-106L17.g
ACCDH914387DH914388
length1,039896
definitionDH914387|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L17, 5' end.DH914388|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,500,504 - 119,501,516)(119,644,344 - 119,645,232)
sequence
gaattctctgcttttctgtgaaataaatcgcattattcaggggcttgggg
ggtgaatggggaaagcagttgttaatacaccacagttcttcagaagggcc
gctctccctcagctgggactaagttctccaagaccaagtaagtcagccta
gagccaacccatggagccagcatcctgggtcctgatctcacagcctcttg
gtcctcagcctcggtgccacaggatgccagggagcagcaggaggcgatat
cagaagcagctggcctttgtcttcctctgccaagggtgctcccctgacgg
aagcagcagcagctgcctttctgacccaatttgtttggaaacctgggact
ttctagggatataaacaagatctgcttcttctggggctaaagagctggct
gggaagatggagtctttctattctattctattctattctattctattcta
ttctattcttttctctaagatctacaggtaaggtaggcctatcctcaaag
ctgacactgcttgaaatgccttgcttaaaggagcacagctgccccagtag
tgcctgccaggagcactcccagagggcctggtggcttctaaggaaatcag
catcattgttgggactgaggtgttgctttgaggctgagctctaaagaggc
tgtcggggattaggaactgcttccatggtggctgtcatttactgtgactt
tcccaaggtgctgtgctcagttggtctggaaagggggtgaattggctctg
gttaaagcgtcaattggatttctgatctctacctgtggatagggttcaga
caagcatgtagttctagctttaaaaggtaaaacagatctgaacttgaatc
tcagtggcctcgtataccggctgctcatagctcccccccttcaggcttta
gacttttgaagcaactgtgtgcagtcacagaactgggccgatatccattg
aaactgtatatatccttgttcaccggtttgtttcaggggtcactggctcc
ttaaaaagaaagtctggaacttggttattgctcatttcc
tgaccgaaaccaaaaccaaaggaagaaggacagagaaagtggcgataaca
aaatgcatctgtcatgacactattgcaagcatgaggtgtagactcgccaa
agaaatattccaggacaccactaactttatttatctttattgttttaagg
gtctcaatatgcatctagctgccgtgagactcattatgtagaccagactg
gtcttgaactcagagatccacctgcctctgtctcatgagtgctgggatta
aaggcgtaccaaccggcccacttgtaattatttctatgagtttactttga
ctcatcccaaagacagcaagtgggattcaaaatattgaagaactgtctat
tctaaaactaaaaatgtaatattttcaggaaacttttttcagatatgttc
cacaataacaagaatgaaacatgcttagctttttattattttttaaacat
gttgttactcacttcaataaaggtaagaatagtatttattatagaaggca
aactggagaagaattggcaaccatctttttattatctaaagacaacacca
atatctcattcagaaaaaaataattctagctagattgtgccccctatgtg
aaaagacaaaatattagaacttaaagttatataaaataatctctttataa
tttgaagaaagcaaagattattttaatctacaaagattgacacactatat
aaaaattgagaacacctaggagtaaattttcattataaaagagtaaaagc
caaactatgggactggggaaatattttttaatatacacatctatataaag
gtcccatcccataccataaaaagaatgaccacaaatccagacttactctc
taaagcaactgcttataaaatacggggctaagaaatggatcaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_119500504_119501516
seq2: B6Ng01-106L17.b_27_1041

seq1  GAATTCTCTGCTTTTCTGTGAAATAAAT-GCATTATTCAGGGGCTTGGGG  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTCTGCTTTTCTGTGAAATAAATCGCATTATTCAGGGGCTTGGGG  50

seq1  GGTGAATGGGGAAAGCAGTTGTTAATACACCACAGTTCTTCAGAAGGGCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGGGGAAAGCAGTTGTTAATACACCACAGTTCTTCAGAAGGGCC  100

seq1  GCTCTCCCTCAGCTGGGACTAAGTTCTCCAAGACCAAGTAAGTCAGCCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTCAGCTGGGACTAAGTTCTCCAAGACCAAGTAAGTCAGCCTA  150

seq1  GAGCCAACCCATGGAGCCAGCATCCTGGGTCCTGATCTCACAGCCTCTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACCCATGGAGCCAGCATCCTGGGTCCTGATCTCACAGCCTCTTG  200

seq1  GTCCTCAGCCTCGGTGCCACAGGATGCCAGGGAGCAGCAGGAGGCGATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGCCTCGGTGCCACAGGATGCCAGGGAGCAGCAGGAGGCGATAT  250

seq1  CAGAAGCAGCTGGCCTTTGTCTTCCTCTGCCAAGGGTGCTCCCCTGACGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAGCTGGCCTTTGTCTTCCTCTGCCAAGGGTGCTCCCCTGACGG  300

seq1  AAGCAGCAGCAGCTGCCTTTCTGACCCAATTTGTTTGGAAACCTGGGACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAGCAGCTGCCTTTCTGACCCAATTTGTTTGGAAACCTGGGACT  350

seq1  TTCTAGGGATATAAACAAGATCTGCTTCTTCTGGGGCTAAAGAGCTGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGGATATAAACAAGATCTGCTTCTTCTGGGGCTAAAGAGCTGGCT  400

seq1  GGGAAGATGGAGTCTTTCTATTCTATTCTATTCTATTCTATTCTATTCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATGGAGTCTTTCTATTCTATTCTATTCTATTCTATTCTATTCTA  450

seq1  TTCTATTCTTTTCTCTAAGATCTACAGGTAAGGTAGGCCTATCCTCAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCTTTTCTCTAAGATCTACAGGTAAGGTAGGCCTATCCTCAAAG  500

seq1  CTGACACTGCTTGAAATGCCTTGCTTAAAGGAGCACAGCTGCCCCAGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTGCTTGAAATGCCTTGCTTAAAGGAGCACAGCTGCCCCAGTAG  550

seq1  TGCCTGCCAGGAGCACTCCCAGAGGGCCTGGTGGCTTCTAAGGAAATCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCAGGAGCACTCCCAGAGGGCCTGGTGGCTTCTAAGGAAATCAG  600

seq1  CATCATTGTTGGGACTGAGGTGTTGCTTTGAGGCTGAGCTCTAAAGAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGTTGGGACTGAGGTGTTGCTTTGAGGCTGAGCTCTAAAGAGGC  650

seq1  TGTCGGGGATTAGGAACTGCTTCCATGGTGGCTGTCATTTACTGTGACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGGGATTAGGAACTGCTTCCATGGTGGCTGTCATTTACTGTGACTT  700

seq1  TCCCAAGGTGCTGTGCTCAGTTGGTCTGGAAAGGGGGTGAATTGGCTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGTGCTGTGCTCAGTTGGTCTGGAAAGGGGGTGAATTGGCTCTG  750

seq1  GTTAAAGCGTCAATTGGATTTCTGATCTCTACCTGTGGATAGGGTTCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCGTCAATTGGATTTCTGATCTCTACCTGTGGATAGGGTTCAGA  800

seq1  CAAGCAGGTAG-TCTAGCTTAAAAAGGTAAAACAGATCTGAACTTGAATC  848
      |||||| |||| |||||||| |||||||||||||||||||||||||||||
seq2  CAAGCATGTAGTTCTAGCTTTAAAAGGTAAAACAGATCTGAACTTGAATC  850

seq1  TCAGTGGCCTCG-ATACCGGCTGC-CATAGCTCCCCCC--TCAGGCTTTA  894
      |||||||||||| ||||||||||| |||||||||||||  ||||||||||
seq2  TCAGTGGCCTCGTATACCGGCTGCTCATAGCTCCCCCCCTTCAGGCTTTA  900

seq1  GAC-TTTGAAGCAACTGTGTGCAGTCACAGAACTGGGCCGATATCCATTG  943
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGAAGCAACTGTGTGCAGTCACAGAACTGGGCCGATATCCATTG  950

seq1  AAACTGTATATATCCTTGTTCACGGTTTTGTTTCAAGGGGTACACTGGCT  993
      ||||||||||||||||||||||| | |||||||| |||||| ||||||||
seq2  AAACTGTATATATCCTTGTTCACCGGTTTGTTTC-AGGGGT-CACTGGCT  998

seq1  CCTTTAGAAAAGAAAAGTCT  1013
      ||||   ||||  |||||||
seq2  CCTT---AAAAAGAAAGTCT  1015

seq1: chr10_119644344_119645232
seq2: B6Ng01-106L17.g_75_970 (reverse)

seq1  TACCTGATCCAGTCTCTT-GCCCCGTTTTCTATTAGCAGTTTGCTTTAGA  49
      ||||||||||| | |||| ||||||| || ||| ||||| ||||||||||
seq2  TACCTGATCCA-TTTCTTAGCCCCGTATTTTATAAGCAG-TTGCTTTAGA  48

seq1  GAGTAAGTCTGGATTTGTGGTCATTCTTTTTATGGTATGGGATGGGAACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTAAGTCTGGATTTGTGGTCATTCTTTTTATGGTATGGGATGGGACCT  98

seq1  TTATATAGATGTGTATATT-AAAAATATTT-CCCAGT-CCATAGTTT-GC  145
      ||||||||||||||||||| |||||||||| |||||| ||||||||| ||
seq2  TTATATAGATGTGTATATTAAAAAATATTTCCCCAGTCCCATAGTTTGGC  148

seq1  TTTTACTCTTTTATAATG-AAATTTACTCCTAGGTGTTCTCAA-TTTTAT  193
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TTTTACTCTTTTATAATGAAAATTTACTCCTAGGTGTTCTCAATTTTTAT  198

seq1  ATAGTGTGTCAATCTTTGTAGATT-AAATAATCTTTGCTTTCTTCAAATT  242
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAGTGTGTCAATCTTTGTAGATTAAAATAATCTTTGCTTTCTTCAAATT  248

seq1  ATAAAGAGATTATTTTATATAACTTTAAGTTCTAATATTTTGTC-TTTCA  291
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAAAGAGATTATTTTATATAACTTTAAGTTCTAATATTTTGTCTTTTCA  298

seq1  CATAGGGGGCACAATCTAGCTAGAATTATTTTTTTCTGAATGAGATATTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGGGCACAATCTAGCTAGAATTATTTTTTTCTGAATGAGATATTG  348

seq1  GTGTTGTCTTTAGATAATAAAAAGATGGTTGCCAATTCTTCTCCAGTTTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCTTTAGATAATAAAAAGATGGTTGCCAATTCTTCTCCAGTTTG  398

seq1  CCTTCTATAATAAATACTATTCTTACCTTTATTGAAGTGAGTAACAACAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATAATAAATACTATTCTTACCTTTATTGAAGTGAGTAACAACAT  448

seq1  GTTTAAAAAATAATAAAAAGCTAAGCATGTTTCATTCTTGTTATTGTGGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAATAATAAAAAGCTAAGCATGTTTCATTCTTGTTATTGTGGA  498

seq1  ACATATCTGAAAAAAGTTTCCTGAAAATATTACATTTTTAGTTTTAGAAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGAAAAAAGTTTCCTGAAAATATTACATTTTTAGTTTTAGAAT  548

seq1  AGACAGTTCTTCAATATTTTGAATCCCACTTGCTGTCTTTGGGATGAGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTCTTCAATATTTTGAATCCCACTTGCTGTCTTTGGGATGAGTC  598

seq1  AAAGTAAACTCATAGAAATAATTACAAGTGGGCCGGTTGGTACGCCTTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACTCATAGAAATAATTACAAGTGGGCCGGTTGGTACGCCTTTA  648

seq1  ATCCCAGCACTCATGAGACAGAGGCAGGTGGATCTCTGAGTTCAAGACCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCATGAGACAGAGGCAGGTGGATCTCTGAGTTCAAGACCA  698

seq1  GTCTGGTCTACATAATGAGTCTCACGGCAGCTAGATGCATATTGAGACCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCTACATAATGAGTCTCACGGCAGCTAGATGCATATTGAGACCC  748

seq1  TTAAAACAATAAAGATAAATAAAGTTAGTGGTGTCCTGGAATATTTCTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAATAAAGATAAATAAAGTTAGTGGTGTCCTGGAATATTTCTTT  798

seq1  GGCGAGTCTACACCTCATGCTTGCAATAGTGTCATGACAGATGCATTTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTCTACACCTCATGCTTGCAATAGTGTCATGACAGATGCATTTTG  848

seq1  TTATCGCCACTTTCTCTGTCCTTCTTCCTTTGGTTTTGGTTTCGGTCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGCCACTTTCTCTGTCCTTCTTCCTTTGGTTTTGGTTTCGGTCA  896