BAC Information

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BAC

Clone NameB6Ng01-106O01
Chromosome6 (Build37)10 (Build37)
Map Location 48,176,271 - 48,176,932129,457,438 - 129,458,565
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCntnap2, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106O01.bB6Ng01-106O01.g
ACCDH914495DH914496
length9811,120
definitionDH914495|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O01, 5' end.DH914496|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,176,271 - 48,176,932)(129,457,438 - 129,458,565)
sequence
gaattccacactcctaagccccttaccccataaaaacccctagctttcga
gcctcatggccgacatctgttatctcctgtgtggaatgcatgttggtcca
gagctctgtaattaaacaacctaatgtaattacatcaagacattctgtcc
tgtttatgatttttgggtgcacgctgaattgggaatggagtgggggtttc
cccgctaggtctatcatttggaggtcccaccgagatctgcgtgacaccca
ggaacccctaaagaccccttggaggtatgtttgttttgtgagtcttgcat
gttgtctgttgtctaaatgtctaagtgtggcactgctgaatttgtgtctt
ggtttttcagttctgagattgtgggtttgagtcccaccttgtgtcttggt
tttcagttctggtattctgtattctggcaactgccactgtggaccgtaag
gacctagtggctgtgggaggaagatgttttatggccccacaggctgcaac
cttggaagatgttccaagggtaaccctggaggaagtgcccagggtaaggg
acagtcagaaaagactggctgtcctctggcagagtgagagagatcaggtc
ttctctctgccagagcaggagtggatgtggaatcccaccccgtcaggaag
ggagttgatgtggaatctgaccggtcaggaagtagtgtttggctggttgt
ataagtccaggagcagatgagtgtgcctagatatactggtgtctttttct
ctggtgctatctttgttttttgtttgtgggttttcatcatgggacacaga
cacttatacattggaggtaaagtgggaatccctccctgcctgtctgtgtt
gtttgtctgtgtgtctgtctgttcttgttcacttggtgtcctccattgga
cccaccttctgattctgttttgtttttggtttgcctggtttagtcgggtt
tggtccaaggagtgactgatatttgttgggt
gaattccatacattggatatagtatgttttgattaaatcaacctcttgtt
tattcccctcaaattttttcttatatatcctcaacaaattttcacttttt
ctgtccaatttcatgtactctcttttaaactgaccaagtccattttgtgt
ggccagtacatgtattagtgcaagtccatcctctgatgcatggacttcca
gtcaggagtcacagcactgaggaaaacgacccttaaattcacatttagag
tatcacaattcagagtattatagtctgttcattttgtatctatgtatgga
gatattacactgaaatacctctacaaatataattaacaacaataataagt
aaaatgaaatatattgagctcagacttttatcttgaggaaatctactagt
taataacattttcagagatgagttagctcaatattttatcaaacagaaat
ctaggagtaagtagtattctaaagtctatacatgttatatttcagtttac
aaattaagatgaaatatcaaatacatgtttaatattaagtattttgacat
tgattttttagaaaacgcagcagtgaatatgtaaggcataatactatcca
caagatcaataaactatattacatcaagacagttttgatttaaggttaat
attactgtaagattttgaattttcctcaatttctcttaatgttgataata
ccttgtaagatatttggcaaggattttaagaaatataaactctttttgat
gtaagtatgaaacttcattgtatttcttattaaacaacatttactgaata
ttatgagcaatggacacattctattcttgattctaactttatttcatatt
tccagcaagccaactaaaaccatctgctatatctttcttcctaagatcaa
atcacgaattcaataaaatcattaattcatccaaacagcattaattcatg
aaagttcatctttaggttgatctgcagaaatctactcataggtgggttta
tgcccaggattataatactagttaataatgacaaaaaaaggcatagcact
gcagaaataattcttgaaatgaagtctctttgggactgctctcaaagaac
ctcattcttagttcatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48176271_48176932
seq2: B6Ng01-106O01.b_388_1018

seq1  ATTTGTGTCTTGGTTTTTCAGTTCTGAGATTGTGGGTTTGAGTCCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTCTTGGTTTTTCAGTTCTGAGATTGTGGGTTTGAGTCCCACCT  50

seq1  TGTGTCTGGGTTCCCATTTCTGGTATTCTGTATTCTGGCAGCTGCCGCTG  100
      ||||||| ||||  || ||||||||||||||||||||||| ||||| |||
seq2  TGTGTCTTGGTTTTCAGTTCTGGTATTCTGTATTCTGGCAACTGCCACTG  100

seq1  TGGACCGTAAGGACCTAGTGGCTGTGGGAGTAAGACGTTCTATGGCCCCA  150
      |||||||||||||||||||||||||||||| |||| ||| ||||||||||
seq2  TGGACCGTAAGGACCTAGTGGCTGTGGGAGGAAGATGTTTTATGGCCCCA  150

seq1  CAGGCTGCAACCTTGGAAGACGTTCCAAGGGTGACCCTGGAGGAAGTGCC  200
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  CAGGCTGCAACCTTGGAAGATGTTCCAAGGGTAACCCTGGAGGAAGTGCC  200

seq1  CAGGATGAGGGACAGTCAGAAAGGACTGGCTGTCTTCTGGAAGAGTGAGA  250
      |||| | ||||||||||||||| ||||||||||| ||||| |||||||||
seq2  CAGGGTAAGGGACAGTCAGAAAAGACTGGCTGTCCTCTGGCAGAGTGAGA  250

seq1  GAGATCAGGTCCTCTTTCTGCCAGAGAGGGGGTGGATGTGGAATCCCACC  300
      ||||||||||| ||| ||||||||||  || |||||||||||||||||||
seq2  GAGATCAGGTCTTCTCTCTGCCAGAGCAGGAGTGGATGTGGAATCCCACC  300

seq1  TCGTCAGGAAGGGAGTCGATGTGGAATCTGACCCCCGTCAGGAAAGAGGT  350
       ||||||||||||||| ||||||||||||                     
seq2  CCGTCAGGAAGGGAGTTGATGTGGAATCT---------------------  329

seq1  CGATGTGGAATCCGACCTGTCAGGACGTAGTGTTTGGCTGGTTGTATAAG  400
                   |||| ||||||| ||||||||||||||||||||||||
seq2  -------------GACCGGTCAGGAAGTAGTGTTTGGCTGGTTGTATAAG  366

seq1  TCCAGGCACAGATGGGTGTGCTTAGATATACTGGTGT-TTTCTCTCTGTT  449
      ||||||  |||||| |||||| ||||||||||||||| ||| |||||| |
seq2  TCCAGGAGCAGATGAGTGTGCCTAGATATACTGGTGTCTTTTTCTCTGGT  416

seq1  GCTATCTT--GTTTTTGTTTGT-GGTTTTCATCATGGGACACAGA-AATT  495
      ||||||||   ||||||||||| |||||||||||||||||||||| | ||
seq2  GCTATCTTTGTTTTTTGTTTGTGGGTTTTCATCATGGGACACAGACACTT  466

seq1  GTACATTGGAGGTAAAGT-GGAATCCCTCCCTGCCTGTCTGT-CTGTATG  543
       ||||||||||||||||| |||||||||||||||||||||||  ||| ||
seq2  ATACATTGGAGGTAAAGTGGGAATCCCTCCCTGCCTGTCTGTGTTGTTTG  516

seq1  TCTGTGTGTCTGTCTGTT-TTGTTCACTTGTGTGTCCTCCATTGGA-CCA  591
      |||||||||||||||||| ||||||||||| ||||||||||||||| |||
seq2  TCTGTGTGTCTGTCTGTTCTTGTTCACTTG-GTGTCCTCCATTGGACCCA  565

seq1  CCTTCTGATTTTGGTTTGTTTTTGGTTTGTCTGGTTTCAAGTCTGGTTTT  641
      |||||||||| || ||||||||||||||| |||||||  |||| || |||
seq2  CCTTCTGATTCTGTTTTGTTTTTGGTTTGCCTGGTTT--AGTC-GGGTTT  612

seq1  GGTCCCAAGGAGTTGACTGAT  662
      ||| |||||||| ||||||||
seq2  GGT-CCAAGGAG-TGACTGAT  631

seq1: chr10_129457438_129458565
seq2: B6Ng01-106O01.g_64_1183

seq1  GAATTCCATACATTGGATATAGTATGTTTTGATTAAATCAACCTCTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACATTGGATATAGTATGTTTTGATTAAATCAACCTCTTGTT  50

seq1  TATTCCCCTCAAATTTTTTCTTATATATCCTCAACAAATTTTCACTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCTCAAATTTTTTCTTATATATCCTCAACAAATTTTCACTTTTT  100

seq1  CTGTCCAATTTCATGTACTCTCTTTTAAACTGACCAAGTCCATTTTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAATTTCATGTACTCTCTTTTAAACTGACCAAGTCCATTTTGTGT  150

seq1  GGCCAGTACATGTATTAGTGCAAGTCCATCCTCTGATGCATGGACTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTACATGTATTAGTGCAAGTCCATCCTCTGATGCATGGACTTCCA  200

seq1  GTCAGGAGTCACAGCACTGAGGAAAACGACCCTTAAATTCACATTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGTCACAGCACTGAGGAAAACGACCCTTAAATTCACATTTAGAG  250

seq1  TATCACAATTCAGAGTATTATAGTCTGTTCATTTTGTATCTATGTATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAATTCAGAGTATTATAGTCTGTTCATTTTGTATCTATGTATGGA  300

seq1  GATATTACACTGAAATACCTCTACAAATATAATTAACAACAATAATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTACACTGAAATACCTCTACAAATATAATTAACAACAATAATAAGT  350

seq1  AAAATGAAATATATTGAGCTCAGACTTTTATCTTGAGGAAATCTACTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAATATATTGAGCTCAGACTTTTATCTTGAGGAAATCTACTAGT  400

seq1  TAATAACATTTTCAGAGATGAGTTAGCTCAATATTTTATCAAACAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACATTTTCAGAGATGAGTTAGCTCAATATTTTATCAAACAGAAAT  450

seq1  CTAGGAGTAAGTAGTATTCTAAAGTCTATACATGTTATATTTCAGTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTAAGTAGTATTCTAAAGTCTATACATGTTATATTTCAGTTTAC  500

seq1  AAATTAAGATGAAATATCAAATACATGTTTAATATTAAGTATTTTGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGATGAAATATCAAATACATGTTTAATATTAAGTATTTTGACAT  550

seq1  TGATTTTTTAGAAAACGCAGCAGTGAATATGTAAGGCATAATACTATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTAGAAAACGCAGCAGTGAATATGTAAGGCATAATACTATCCA  600

seq1  CAAGATCAATAAACTATATTACATCAAGACAGTTTTGATTTAAGGTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCAATAAACTATATTACATCAAGACAGTTTTGATTTAAGGTTAAT  650

seq1  ATTACTGTAAGATTTTGAATTTTCCTCAATTTCTCTTAATGTTGATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTAAGATTTTGAATTTTCCTCAATTTCTCTTAATGTTGATAATA  700

seq1  CCTTGTAAGATATTTGGCAAGGATTTTAAGAAATATAAACTCTTTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAGATATTTGGCAAGGATTTTAAGAAATATAAACTCTTTTTGAT  750

seq1  GTAAGTATGAAACTTCATTGTATTTCTTATTAAACAACATTTACTGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATGAAACTTCATTGTATTTCTTATTAAACAACATTTACTGAATA  800

seq1  TTATGAGCAATGGACACATTCTATTCTTGATTCTAACTTTATTTCATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCAATGGACACATTCTATTCTTGATTCTAACTTTATTTCATATT  850

seq1  TCCAGCAAGCCAACTAAAACCATCTGCTATATCTTTCTTCCTAAGATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAAGCCAACTAAAACCATCTGCTATATCTTTCTTCCTAAGATCAA  900

seq1  ATCAGGAATTCAATAAAATCATTAATTCATCCAAACAGCATTAATTCATG  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGAATTCAATAAAATCATTAATTCATCCAAACAGCATTAATTCATG  950

seq1  AAAGTTCATCTTTAGGTTGATCTGCAGGAAATCTACTCAATAGGGTGGGT  1000
      |||||||||||||||||||||||||| ||||||||||| ||| |||||||
seq2  AAAGTTCATCTTTAGGTTGATCTGCA-GAAATCTACTC-ATA-GGTGGGT  997

seq1  TTATGCCCAGGGATTATTATACTAATTTAATAATGAC-AAAAAAGGCATA  1049
      ||||||||| ||||||| ||||| | ||||||||||| ||||||||||||
seq2  TTATGCCCA-GGATTATAATACT-AGTTAATAATGACAAAAAAAGGCATA  1045

seq1  GCACCTGCAAGAAATAA-TCCTGAGATGAAGTCTCTTTGGGACCTTGCCT  1098
      ||| |||| |||||||| || ||| ||||||||||||||||||  || ||
seq2  GCA-CTGC-AGAAATAATTCTTGAAATGAAGTCTCTTTGGGAC--TG-CT  1090

seq1  CTCAAAGAACACTCA-TCTTAGTTCATGCAA  1128
      |||||||||| |||| |||||||||||||||
seq2  CTCAAAGAAC-CTCATTCTTAGTTCATGCAA  1120