BAC Information

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BAC

Clone NameB6Ng01-106O15
Chromosome10 (Build37)
Map Location 44,780,529 - 44,885,325
singlet/doubletdoublet
Overlap genePrep
Upstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
Downstream genePopdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106O15.bB6Ng01-106O15.g
ACCDH914523DH914524
length1,1471,116
definitionDH914523|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O15, 5' end.DH914524|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,780,529 - 44,781,685)(44,884,202 - 44,885,325)
sequence
gaattccagggagcagacctgtccagagtccatttacctggccagtattt
aacttaatgaaacttgcttcaaaagtctggctcacaatggcagaattggg
tcttctctatgaatctgaggattaatgcctgaataggcagaaaataaact
tcattgtgacagtgatctctgatttcccagttctcttctacccctacctc
cccaaactcctgcctgtccccaaagtccccaggtagccctggctggcaca
gaactcaatgcttagaccagactggtttgcctctgctccctaagtgcttg
aattaaaggcttgcaccaccgtgcctaactctccaagctcttaatatagt
tgttcatctctgagtgtttgctaactgtttccatttacacaattgcatgt
ttgtaacttatctgttttcctgttgggtttcttatccatatttcagctga
agaggaattcttctgtgtagcaaatatttttcttagcacctgccctgcct
tttcacatctccttaaaggccatgtgttcccttaaactgcagagatattt
aatagttgtctttactcttatacttcatggctccttttctttctacccct
tgcttccttgtcttgtcggtgttgtatagagcttgctgccagtttataaa
ctctttttaacttctaggtacatactaaacccatccgtaactttttgctt
taacaatttatttttgatttctaaaactttgatttttgtttcccaatcca
gctggtcaatttttgtacttccttgcagcttactggttttgttttttgtg
tttgtttattagtctttttctcccttgaaacatttattatcttgctattc
atgttctatgttttatttttccaatatgtaagttcttcagacacctttaa
atatgctttttgtcatttcttatttcttatatttatagtaaagggtgtca
aggaagacaaatttggaactatgctagatatttcaaacagaactgaatag
attacattcgttactgctgctgccttgcattctcagactctgcagagctg
gcatcttcaatccctttcattccttgaattgctcagtcagctgcagaatg
cttctggaccatcacccccccccccgtccccatcccactgaccgacc
gaattcatcagtgaagccagtgggtcctagacatttcatttataggcagt
agatttaattactgcagtgatctgctggagagatggctcggcagttagga
acactggctgctcttccagaggagccagggtcaaattcccatgtcagctc
acaactgtttttaactcctgttccaagggatctgacaccctcatacagac
atacttgcaggcaaaacaccaatgtgcataaataaataaatacataaata
aattgatatctaataagaaggccctaggggtagaggcaaagttgatgggt
ggagattaaggatcaatgtgcaaaattacactgaggcttttctaagcctg
acacagaaaaccttactcctgcaagaaaaagaatgtcaaacttgatagaa
aaaactattcacttagattttataatttgctttttaatttttatttgaaa
atattgaaatgagtataaaagaaaagccatgtgtcagtagatgatctata
tttctcttgaagccttaggagtcactctgatgcacatagccctgcctact
gctcctgctctgaggaccggagcctagcaaatagctttgcagtgattagg
gtctttaaaataagacaacaggagcccctgtcatgatctttgaaaggatt
atacctgtggcactggggaattaaatttaacaagccttaggagtgttttg
gggattggtagcatattcatgaggtaatgtgaccctcttcccttctgagt
cttaatgtacctgttagtccttttaagtttatttttcttctaatctagaa
aagcacaaaagtgtgggctgaggcagagggtgagggagaagaggatgcag
acccttatctgtgctcatgtataggaaaatatcctgttttagtttgtgat
atatctggagtaactcctctgcagctgaggacagttacccacttggggca
ttctgattagtgggtgatagacatagctgccaggatagttagctggtact
tattatctactgctcttgagaatactcacagttcctgattgatcatggca
tcttgttgggtagacacctgtgttagttttaattgatgttttctacttaa
ggcatgggccagagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_44780529_44781685
seq2: B6Ng01-106O15.b_46_1192

seq1  GAATTCCAGGGAGCAGACCTGTCCAGAGTCCATTTACCTGGCCAGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGCAGACCTGTCCAGAGTCCATTTACCTGGCCAGTATTT  50

seq1  AACTTAATGAAACTTGCTTCAAAAGTCTGGCTCACAATGGCAGAATTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATGAAACTTGCTTCAAAAGTCTGGCTCACAATGGCAGAATTGGG  100

seq1  TCTTCTCTATGAATCTGAGGATTAATGCCTGAATAGGCAGAAAATAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTATGAATCTGAGGATTAATGCCTGAATAGGCAGAAAATAAACT  150

seq1  TCATTGTGACAGTGATCTCTGATTTCCCAGTTCTCTTCTACCCCTACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGACAGTGATCTCTGATTTCCCAGTTCTCTTCTACCCCTACCTC  200

seq1  CCCAAACTCCTGCCTGTCCCCAAAGTCCCCAGGTAGCCCTGGCTGGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTCCTGCCTGTCCCCAAAGTCCCCAGGTAGCCCTGGCTGGCACA  250

seq1  GAACTCAATGCTTAGACCAGACTGGTTTGCCTCTGCTCCCTAAGTGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAATGCTTAGACCAGACTGGTTTGCCTCTGCTCCCTAAGTGCTTG  300

seq1  AATTAAAGGCTTGCACCACCGTGCCTAACTCTCCAAGCTCTTAATATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGGCTTGCACCACCGTGCCTAACTCTCCAAGCTCTTAATATAGT  350

seq1  TGTTCATCTCTGAGTGTTTGCTAACTGTTTCCATTTACACAATTGCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCTCTGAGTGTTTGCTAACTGTTTCCATTTACACAATTGCATGT  400

seq1  TTGTAACTTATCTGTTTTCCTGTTGGGTTTCTTATCCATATTTCAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTTATCTGTTTTCCTGTTGGGTTTCTTATCCATATTTCAGCTGA  450

seq1  AGAGGAATTCTTCTGTGTAGCAAATATTTTTCTTAGCACCTGCCCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATTCTTCTGTGTAGCAAATATTTTTCTTAGCACCTGCCCTGCCT  500

seq1  TTTCACATCTCCTTAAAGGCCATGTGTTCCCTTAAACTGCAGAGATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCTCCTTAAAGGCCATGTGTTCCCTTAAACTGCAGAGATATTT  550

seq1  AATAGTTGTCTTTACTCTTATACTTCATGGCTCCTTTTCTTTCTACCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTGTCTTTACTCTTATACTTCATGGCTCCTTTTCTTTCTACCCCT  600

seq1  TGCTTCCTTGTCTTGTCGGTGTTGTATAGAGCTTGCTGCCAGTTTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTGTCTTGTCGGTGTTGTATAGAGCTTGCTGCCAGTTTATAAA  650

seq1  CTCTTTTTAACTTCTAGGTACATACTAAACCCATCCGTAACTTTTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAACTTCTAGGTACATACTAAACCCATCCGTAACTTTTTGCTT  700

seq1  TAACAATTTATTTTTGATTTCTAAAACTTTGATTTTTGTTTCCCAATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTTATTTTTGATTTCTAAAACTTTGATTTTTGTTTCCCAATCCA  750

seq1  GCTGGTCAATTTTTGTACTTCCTTGCAGCTTACTGGTTTTGTTTTTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCAATTTTTGTACTTCCTTGCAGCTTACTGGTTTTGTTTTTTGTG  800

seq1  TTTGTTTATTAGTCTTTTTCTCCCTTGAAACATTTATTATCTTGCTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTAGTCTTTTTCTCCCTTGAAACATTTATTATCTTGCTATTC  850

seq1  ATGTTCTATGTTTTATTTTTCCAATATGTAAGTTCTTCAGACACC-TTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGTTCTATGTTTTATTTTTCCAATATGTAAGTTCTTCAGACACCTTTAA  900

seq1  ATATGCTTTTTGTCATTTCTTATTTCTTATATTTATAGTAAAGGGTGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTTTGTCATTTCTTATTTCTTATATTTATAGTAAAGGGTGTCA  950

seq1  AGGAAGACAAA-TTGGAACTATGCTAGATATTTCAAACAGAACTGAATAG  998
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAAATTTGGAACTATGCTAGATATTTCAAACAGAACTGAATAG  1000

seq1  AATTACATTCGTTACTGCTGCTGCC-TGCATTCTCAGACTCTGCAAGAGC  1047
       |||||||||||||||||||||||| |||||||||||||||||| |||| 
seq2  -ATTACATTCGTTACTGCTGCTGCCTTGCATTCTCAGACTCTGC-AGAG-  1047

seq1  CTGGCAATCTTCCATCCCTTCCATCCCTTTGAAATTGCTCAGTCAGCTGC  1097
      ||||| |||||| ||||||| ||| ||||   ||||||||||||||||||
seq2  CTGGC-ATCTTCAATCCCTTTCATTCCTT--GAATTGCTCAGTCAGCTGC  1094

seq1  AG-ATGCTTCTGGGACATCACCCCCCCCCCCCCCCGTCCCCCACTCCCCA  1146
      || ||||||||||  |||||    |||||||||||||||||   ||||  
seq2  AGAATGCTTCTGGACCATCA----CCCCCCCCCCCGTCCCC--ATCCC--  1136

seq1  CCTGACCGACC  1157
       ||||||||||
seq2  ACTGACCGACC  1147

seq1: chr10_44884202_44885325
seq2: B6Ng01-106O15.g_69_1184 (reverse)

seq1  AACTCTGGCCATTGCCTTTAGTAGAAAACATCAATTTAAAAACTAACACA  50
      ||||||||||  |||||| |||||||||||||||||  ||||||||||||
seq2  AACTCTGGCCCATGCCTTAAGTAGAAAACATCAATT--AAAACTAACACA  48

seq1  -GTGTCTTACCCAAC-AGATGGCCATTGATCAATCAGGAACTGTGAGTAT  98
       ||||| |||||||| |||| |||| ||||||||||||||||||||||||
seq2  GGTGTC-TACCCAACAAGAT-GCCA-TGATCAATCAGGAACTGTGAGTAT  95

seq1  TCTCAAAGAGCAGTTAGATAATAAGTAACCAGCTAAACTATCCTGGCAGC  148
      |||| |||||||| |||||||||||| ||||||| |||||||||||||||
seq2  TCTC-AAGAGCAG-TAGATAATAAGT-ACCAGCT-AACTATCCTGGCAGC  141

seq1  TATGTCTATCACCCACTAATCAGAATGCCCCAAGTGGGTAACTGTCCTCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTATCACCCACTAATCAGAATGCCCCAAGTGGGTAACTGTCCTCA  191

seq1  GCTGCAGAGGAGTTACTCCAGATATATCACAAACTAAAACAGGATATTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGAGGAGTTACTCCAGATATATCACAAACTAAAACAGGATATTTT  241

seq1  CCTATACATGAGCACAGATAAGGGTCTGCATCCTCTTCTCCCTCACCCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACATGAGCACAGATAAGGGTCTGCATCCTCTTCTCCCTCACCCTC  291

seq1  TGCCTCAGCCCACACCTTTTGTGCTTTTCTAGATTAGAAGAAAAATAAAC  348
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGCCCACA-CTTTTGTGCTTTTCTAGATTAGAAGAAAAATAAAC  340

seq1  TTAAAAGGACTAACAGGTACATTAAGACTCAGAAGGGAAGAGGGTCACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGACTAACAGGTACATTAAGACTCAGAAGGGAAGAGGGTCACAT  390

seq1  TACCTCATGAATATGCTACCAATCCCCAAAACACTCCTAAGGCTTGTTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATGAATATGCTACCAATCCCCAAAACACTCCTAAGGCTTGTTAA  440

seq1  ATTTAATTCCCCAGTGCCACAGGTATAATCCTTTCAAAGATCATGACAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCCCCAGTGCCACAGGTATAATCCTTTCAAAGATCATGACAGG  490

seq1  GGCTCCTGTTGTCTTATTTTAAAGACCCTAATCACTGCAAAGCTATTTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGTTGTCTTATTTTAAAGACCCTAATCACTGCAAAGCTATTTGC  540

seq1  TAGGCTCCGGTCCTCAGAGCAGGAGCAGTAGGCAGGGCTATGTGCATCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCCGGTCCTCAGAGCAGGAGCAGTAGGCAGGGCTATGTGCATCAG  590

seq1  AGTGACTCCTAAGGCTTCAAGAGAAATATAGATCATCTACTGACACATGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCCTAAGGCTTCAAGAGAAATATAGATCATCTACTGACACATGG  640

seq1  CTTTTCTTTTATACTCATTTCAATATTTTCAAATAAAAATTAAAAAGCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTATACTCATTTCAATATTTTCAAATAAAAATTAAAAAGCAA  690

seq1  ATTATAAAATCTAAGTGAATAGTTTTTTCTATCAAGTTTGACATTCTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAATCTAAGTGAATAGTTTTTTCTATCAAGTTTGACATTCTTTT  740

seq1  TCTTGCAGGAGTAAGGTTTTCTGTGTCAGGCTTAGAAAAGCCTCAGTGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGGAGTAAGGTTTTCTGTGTCAGGCTTAGAAAAGCCTCAGTGTA  790

seq1  ATTTTGCACATTGATCCTTAATCTCCACCCATCAACTTTGCCTCTACCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCACATTGATCCTTAATCTCCACCCATCAACTTTGCCTCTACCCC  840

seq1  TAGGGCCTTCTTATTAGATATCAATTTATTTATGTATTTATTTATTTATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCTTCTTATTAGATATCAATTTATTTATGTATTTATTTATTTATG  890

seq1  CACATTGGTGTTTTGCCTGCAAGTATGTCTGTATGAGGGTGTCAGATCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGTGTTTTGCCTGCAAGTATGTCTGTATGAGGGTGTCAGATCCC  940

seq1  TTGGAACAGGAGTTAAAAACAGTTGTGAGCTGACATGGGAATTTGACCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACAGGAGTTAAAAACAGTTGTGAGCTGACATGGGAATTTGACCCT  990

seq1  GGCTCCTCTGGAAGAGCAGCCAGTGTTCCTAACTGCCGAGCCATCTCTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCTGGAAGAGCAGCCAGTGTTCCTAACTGCCGAGCCATCTCTCC  1040

seq1  AGCAGATCACTGCAGTAATTAAATCTACTGCCTATAAATGAAATGTCTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCACTGCAGTAATTAAATCTACTGCCTATAAATGAAATGTCTAG  1090

seq1  GACCCACTGGCTTCACTGATGAATTC  1124
      ||||||||||||||||||||||||||
seq2  GACCCACTGGCTTCACTGATGAATTC  1116