This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-106P07
Chromosome
10 (Build37)
Map Location
36,245,211 - 36,246,347
singlet/doublet
singlet
Overlap gene
Hs3st5
Upstream gene
LOC100041585
,
LOC667860
Downstream gene
Hdac2
,
Marcks
,
LOC100040846
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100041585
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041585
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 379 ESTs, 9 Proteins
name
LOC667860
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667860
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Hs3st5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:319415
MGI:2441996
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Hdac2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:15182
MGI:1097691
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Marcks
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17118
MGI:96907
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040846
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040846
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs
name
LOC100041585
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149260721
GeneID:100041585
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 379 ESTs, 9 Proteins
product
: similar to S-adenosylmethionine decarboxylase
transcript_id
: XM_001476532.1
name
Hs3st5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124487076
GeneID:319415
MGI:2441996
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: heparan sulfate (glucosamine) 3-O-sulfotransferase 5
transcript_id
: NM_001081208.1
name
Hdac2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:87162463
GeneID:15182
MGI:1097691
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: histone deacetylase 2
transcript_id
: NM_008229.2
name
Marcks
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:113865974
GeneID:17118
MGI:96907
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: myristoylated alanine rich protein kinase C substrate
transcript_id
: NM_008538.2
name
LOC100040846
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149260682
GeneID:100040846
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs
product
: hypothetical protein LOC100040846
transcript_id
: XM_001475382.1
name
LOC100041585
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149260722
GeneID:100041585
definition
codon_start
: 1
product
: similar to S-adenosylmethionine decarboxylase
protein_id
: XP_001476582.1
name
Hs3st5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124487077
GeneID:319415
MGI:2441996
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0008467 - heparin-glucosamine 3-O-sulfotransferase activity [Evidence ISS]
codon_start
: 1
note
: heparan sulfate D-glucosaminyl 3-O-sulfotransferase 5
product
: heparan sulfate (glucosamine) 3-O-sulfotransferase 5
protein_id
: NP_001074677.1
name
Hdac2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:87162464
CCDS:CCDS23783.1
GeneID:15182
MGI:1097691
definition
GO_component
: GO:0005737 - cytoplasm [Evidence TAS]; GO:0000792 - heterochromatin [Evidence IDA]; GO:0000118 - histone deacetylase complex [Evidence TAS]; GO:0005634 - nucleus [Evidence TAS] [Evidence IDA]; GO:0005657 - replication fork [Evidence IDA]
GO_function
: GO:0004407 - histone deacetylase activity [Evidence TAS] [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence TAS]
GO_process
: GO:0016568 - chromatin modification [Evidence TAS] [Evidence IEA]; GO:0016575 - histone deacetylation [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
product
: histone deacetylase 2
protein_id
: NP_032255.2
name
Marcks
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6678768
CCDS:CCDS23784.1
GeneID:17118
MGI:96907
definition
GO_component
: GO:0005938 - cell cortex [Evidence IDA]; GO:0005813 - centrosome [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0042585 - germinal vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IDA]
GO_function
: GO:0003779 - actin binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]
codon_start
: 1
product
: myristoylated alanine rich protein kinase C substrate
protein_id
: NP_032564.1
name
LOC100040846
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149260683
GeneID:100040846
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001475432.1
name
LOC667860
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667860
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-165B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-358P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-149A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-472L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466F14
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-218F06
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-525B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145O10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495I04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-527C03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-527E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131N06
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-398E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-180G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458G21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-476C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-386B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-509N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-060D23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-060L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-527G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-279F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-476D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-100C22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159H21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339J01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-141N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312O24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-505J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343G05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-431C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-278J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496H10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-168F03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296G20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542K04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497H03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-175H10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-321F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-137B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-324E16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-094I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-091N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-360O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076E03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-180N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-435D07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-073J06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-068K13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-073E10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-007N08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-015A18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086J17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-218P15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232K11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-077N16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-104M17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100M14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-023H17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-027B07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240O01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-312F09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-129E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-338O01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-181G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-064E04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-193D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-083D01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-133I12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-236B15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-314N02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-065B06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327G10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091P20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-068J14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-165J22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-055O10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062F03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-066G01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-275D24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-084A22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-321G03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-111L06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-089L17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343A05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-264F15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-256I01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-207A14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-050C16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-332G15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-106P07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166L03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-344N22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003F05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-189O05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-179N18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-135L12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-175A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-137J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-204G17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-150F04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-280I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-291C14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-102I18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-231D12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-231D04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-181B24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-229G12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-184D22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-115B21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-023N16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-018J14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-005B07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192E10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-268C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-135H09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062G18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-016L20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-165F08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-339G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-237C01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-211L15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-045L24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-226H11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091M17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-291H20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-247L09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-192O17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-280C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-182D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-247N18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-005N17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-041I17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-272G24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-025A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-207G17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-317A04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-301F20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-047P23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-094M07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-143N11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-222E03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-044F05
singlet/doublet
doublet
plural/unique
unique