BAC Information

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BAC

Clone NameB6Ng01-106P24
Chromosome15 (Build37)10 (Build37)
Map Location 66,304,947 - 66,306,106104,053,515 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneLrrc6
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, LOC100040860
Downstream geneTmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106P24.bB6Ng01-106P24.g
ACCDH914585DH914586
length1,153949
definitionDH914585|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P24, 5' end.DH914586|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,304,947 - 66,306,106)(104,053,515 - 104,054,363)
sequence
gaattcactgacctatcagagttttagctgatatagaagcaagacaggaa
ccatcagccatgtgccctgaaattctgacttacaaaaccgtgggacggga
ttgtctattgagacatagcttcctttagtttgtttctttgccacatgaag
gaattggaactctaaagtatatgaagcaagagagtaccagtgttctcata
gcttttgagtggctgagttgaggcttgaacttagatctgctttcctgaaa
agcatttctgagctggcatatgagaatctctgcctgtgttactgctttac
aaatttcatttttatcctcatcatcttcatcacgattgtcatcattatca
tcgtgaccatcatcttcatcaccaccacagctgccaccatcatcatcatc
atgttaaagttcttaagataaagctcttatgcaacacatatttggctacc
taaataacagcatttgtcaccaccaagccaggagtggcctaggctggact
gaacttgaatgcacaatggtggaaagggacagtcttttttaggacaataa
atttggtttgttttatctttaggtttaaacatgaatgttccataatcttg
gtttagcagtatatttgtttctacatattacatgtgtgtgtattaaatca
tatattttcaagattaaagtcacccatggaagggtatgattaaaattgga
tcaaagaataactgagctgtcatgtaaaattaacctagactctacttaat
aaactaacatgagtttaaggctaaaagtcccagctccaacagcaccaaaa
gtttctgatcagcccctggtccccaaacaatagagatggataatggtgat
gggcacagagagagggttttcatcaatggggctgtgttgtaaggggcaaa
tggaaagaaccagcaactccaagtctaaccttagggtactgccagagctt
taaattttacaagaaaatgggataaagggcagcggagagtatagtaatag
tcacgtcacatggagcactcgctggtcatgttatgagttctgatctttcg
agtggtcctcagagttctgctcgccagaagaaaaagccttcgctgtcctt
gccactagactcaacgctttctatcttaaggacaagggttcttagttcta
tgg
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaattg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaactctcctcaattgttggtg
ggattgcaagtttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgccccaactggtaagcaggacacatgctccactat
gttcatagcagtcttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacgcatgaaatttaa
gaagaatgaagaccaaagtgtggacactttggcccttcttagaaatggga
acaaaacacccatggaaggagttacagagacaaaatttggagaaagttct
tatccaccatcaaattccacctggtgttcttcaagaataacggcgtccct
atgtccctatgtccctcctccatgccttctagagtgtgattccagtaaaa
tgtgctaagtagatgaaaattccatttcataattggaatgactaagtgat
tttctttctcaatttattttaactggttgacacagatggagtgaggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_66304947_66306106
seq2: B6Ng01-106P24.b_43_1195

seq1  GAATTCACTGACCTATCAGAGTTTTAGCTGATATAGAAGCAAGACAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCTATCAGAGTTTTAGCTGATATAGAAGCAAGACAGGAA  50

seq1  CCATCAGCCATGTGCCCTGAAATTCTGACTTACAAAACCGTGGGACGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCCATGTGCCCTGAAATTCTGACTTACAAAACCGTGGGACGGGA  100

seq1  TTGTCTATTGAGACATAGCTTCCTTTAGTTTGTTTCTTTGCCACATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATTGAGACATAGCTTCCTTTAGTTTGTTTCTTTGCCACATGAAG  150

seq1  GAATTGGAACTCTAAAGTATATGAAGCAAGAGAGTACCAGTGTTCTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAACTCTAAAGTATATGAAGCAAGAGAGTACCAGTGTTCTCATA  200

seq1  GCTTTTGAGTGGCTGAGTTGAGGCTTGAACTTAGATCTGCTTTCCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAGTGGCTGAGTTGAGGCTTGAACTTAGATCTGCTTTCCTGAAA  250

seq1  AGCATTTCTGAGCTGGCATATGAGAATCTCTGCCTGTGTTACTGCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCTGAGCTGGCATATGAGAATCTCTGCCTGTGTTACTGCTTTAC  300

seq1  AAATTTCATTTTTATCCTCATCATCTTCATCACGATTGTCATCATTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCATTTTTATCCTCATCATCTTCATCACGATTGTCATCATTATCA  350

seq1  TCGTGACCATCATCTTCATCACCACCACAGCTGCCACCATCATCATCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGACCATCATCTTCATCACCACCACAGCTGCCACCATCATCATCATC  400

seq1  ATGTTAAAGTTCTTAAGATAAAGCTCTTATGCAACACATATTTGGCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAGTTCTTAAGATAAAGCTCTTATGCAACACATATTTGGCTACC  450

seq1  TAAATAACAGCATTTGTCACCACCAAGCCAGGAGTGGCCTAGGCTGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACAGCATTTGTCACCACCAAGCCAGGAGTGGCCTAGGCTGGACT  500

seq1  GAACTTGAATGCACAATGGTGGAAAGGGACAGTCTTTTTTAGGACAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAATGCACAATGGTGGAAAGGGACAGTCTTTTTTAGGACAATAA  550

seq1  ATTTGGTTTGTTTTATCTTTAGGTTTAAACATGAATGTTCCATAATCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTTGTTTTATCTTTAGGTTTAAACATGAATGTTCCATAATCTTG  600

seq1  GTTTAGCAGTATATTTGTTTCTACATATTACATGTGTGTGTATTAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCAGTATATTTGTTTCTACATATTACATGTGTGTGTATTAAATCA  650

seq1  TATATTTTCAAGATTAAAGTCACCCATGGAAGGGTATGATTAAAATTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCAAGATTAAAGTCACCCATGGAAGGGTATGATTAAAATTGGA  700

seq1  TCAAAGAATAACTGAGCTGTCATGTAAAATTAACCTAGACTCTACTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAATAACTGAGCTGTCATGTAAAATTAACCTAGACTCTACTTAAT  750

seq1  AAACTAACATGAGTTTAAGGCTAAAAGTCCCAGCTCCAACAGCACCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACATGAGTTTAAGGCTAAAAGTCCCAGCTCCAACAGCACCAAAA  800

seq1  GTTTCTGATCAGCCCCTGGTCCCCAAACAATAGAGATGGATAATGGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGATCAGCCCCTGGTCCCCAAACAATAGAGATGGATAATGGTGAT  850

seq1  GGGCACAGAGAGAGGG-TTTCATCAATGGGGCTGTGTTGTAAGGGGCAAA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGCACAGAGAGAGGGTTTTCATCAATGGGGCTGTGTTGTAAGGGGCAAA  900

seq1  TGGAAAGAACCAGCAACTCCAAGTCTAACCTTAGGGTACTGCCAGAGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAACCAGCAACTCCAAGTCTAACCTTAGGGTACTGCCAGAGCTT  950

seq1  TAAATTTTAACAAGAAAATGGGATAAAGGGCAAGCGGAGAGTATAAGTAA  999
      |||||||| |||||||||||||||||||||| |||||||||||| ||| |
seq2  TAAATTTT-ACAAGAAAATGGGATAAAGGGC-AGCGGAGAGTAT-AGT-A  996

seq1  ATAGTCACGGTCAACAT-GAGCACTCGCTGGTCATGTTATGAGTTCTGAT  1048
      |||||||| ||| |||| ||||||||||||||||||||||||||||||||
seq2  ATAGTCAC-GTC-ACATGGAGCACTCGCTGGTCATGTTATGAGTTCTGAT  1044

seq1  C-TTCGAGGTGGTCTCAAGAAGTCCTGCTCGCCCAGGAGGACAAGCTCTT  1097
      | ||||| ||||||   || ||| ||||||| |||| || | |||| |||
seq2  CTTTCGA-GTGGTCCTCAG-AGTTCTGCTCG-CCAGAAGAAAAAGC-CTT  1090

seq1  CGGCTGTCCTGGCCACTCAGACTCAACGCTATC-ATCCTAAGGACAAGGG  1146
      | |||||||| |||||| |||||||||||| || ||| ||||||||||||
seq2  C-GCTGTCCTTGCCACT-AGACTCAACGCTTTCTATCTTAAGGACAAGGG  1138

seq1  TTCCTAG-TCTATGG  1160
      ||| ||| |||||||
seq2  TTCTTAGTTCTATGG  1153

seq1: chr10_104053515_104054363
seq2: B6Ng01-106P24.g_69_705 (reverse)

seq1  GTTTAGCAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAA  50

seq1  TATCCACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGT  100
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  TATCCACTTATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGATTGGGT  100

seq1  TACCGCACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATT  150
      |||| ||||||||||||| | |||||||||||||||||||||||||||||
seq2  TACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATT  150

seq1  TCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAAT  200
      |||||||||||||||||||||||||                         
seq2  TCATAAATTCATTCTTTTTAATAGC-------------------------  175

seq1  GTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTG  250
                                                        
seq2  --------------------------------------------------  175

seq1  ATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTT  300
                                                        
seq2  --------------------------------------------------  175

seq1  AATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAA  350
                                             | ||||     
seq2  ---------------------------------------TGAGTA-----  181

seq1  TTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCC  400
                              |||                   ||||
seq2  ------------------------GTA-------------------CTCC  188

seq1  ATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCA  450
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCA  238

seq1  TCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATA  500
      |||||||||||||||||| |||||||||||||||||| |||||||||| |
seq2  TCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGACTGCTATGAACA  288

seq1  TAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATG  550
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  TAGTGGAGCATGTGTCCTGCTTACCAGTTGGGGCATCTTCTGGATATATG  338

seq1  CCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCT  600
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCAGGAGAGGTATTGCGGGATCCTCCGGTAGTACTATGTCCAATTTTCT  388

seq1  GACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCC  650
      || |||||||||||| |||||||||||||||||||||| | |||||||||
seq2  GAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAACTTGCAATCCC  438

seq1  ACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTG  700
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  ACCAACAATTGAGGAGAGTTCCTCTTTCTCCACATCCTCGCCAGCATCTG  488

seq1  CTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAA  538

seq1  TCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAAC  588

seq1  ATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  849
      | ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTTTTCAGGTGCTTCTCAGCCATTCGGTATTCCTCAGGTGAGAATTC  637