BAC Information

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BAC

Clone NameB6Ng01-107O17
Chromosome10 (Build37)
Map Location 29,772,386 - 29,913,488
singlet/doubletdoublet
Overlap geneLOC667696, LOC100040542
Upstream gene6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232
Downstream gene2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107O17.bB6Ng01-107O17.g
ACCDH915246DH915247
length1,1481,069
definitionDH915246|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O17, 5' end.DH915247|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,772,386 - 29,773,555)(29,912,412 - 29,913,488)
sequence
gaattctttgtttagctctgaagcccattttttaatggggttatttgatt
ttctggagtttaattatgttttaaaaaacaaaaatgagataacattttac
ctatcatcagtaagtttcactcttaaagctttcaaattttcctttctcct
tgacacctatacacatatcatcctaaaatttccacttatatttgtagtat
gtctcctcaactgcttctaaactttataacaaaggaaaactacatgtaac
cctccaccacctatacactatagcataatacttattatatattacatatt
acatatcatatattagtattatatatataacacaagtattattgagactc
aataaatatgtattagtcaatagagcaagttcaacctcatttggtgctaa
attgctcacaaggatgattgttcctctcactctggtgctggagaaaataa
agatactcaaagccttttttcctatccagttctgtccatgacaacaaagc
aaaaacagtgtaggaaaaaaaattcacatctgtacacaatactctgtctt
gtcaaccaaaaaaaaaaaaaaaaaaaaaaaaaagaaccaagtcacgtgtg
actaaatgtagtctgaagtctgagtaagaagacaagaggaacttttcaga
ttgttgtaaatattattttactgcaatgctgttattgacactttaaatgc
agttcacatcccagaagcataggcatggatggggctcatgctaagatttc
ataaattgtctgtcaacaacagtgcatcagctttctgtgggaagagtact
tggagtagatagaataatttatcaccagaaatcgaggtgtctagcacagt
tttgcactctataaacttcatcttagcagatagctgtctcatcagctctc
cattttattgatgttttattattcataatagtcacttgtactcaatattc
catatatagattggcttctactcagtacacatacatgcacacacacacca
tacaccacatgcaacacacatacacatacacatgtactaccaccatgaga
gagaaccgaccagatacttacccacccttaccacaccacatacccaccat
acacacctatactatgccatcacccatggaaagaaaagagataactgc
gaattctgagccaaagaatgtctttattttgtatgtattatttgtgtaag
ggtcctaaagggaaggcactatcttactaaacagccatctccagcattta
tttctccctgcctctggcctcttcacttctgattttctcctgtgatcttg
tagttttattgtttctaaggcttgaatccaggtcctcatggatgctaggg
aactatgttgctgatgaacaatattcccagctctctgggaatttaatttt
cctttaaaaaatatttgtattagaaagggttttcagttctggaagcactc
ttcttgaagttgtatataataagataaagtgctggaaggaaaattgtgtc
aaagatatatctcctgtaaagttggagttgctttggcctgtatgcttaat
ttaacttaaaaacatttctagttaatataaaattgtgcaataaaaggaaa
aatggctagttctattaagtcttggtgtgcttattctgagagagtcacag
tcaccaatatctttttattgagtatagtgtccattggaaagaatttgaga
tttataccttgaggccatggtagctaatacattaccataggaaatctcag
atgggagggatttcttcagctgtgctggtaaggaagaaccaagcagaggc
tgtaagcaggcagggcagatactatacttggcctgcaaggggggaaaaaa
agtgaattagactgtactatttaaaaattaaattacacatagaaattaaa
tttctggcttcatttaaaaggctggacagtacagcagtaatatagccata
atcagttttacttaaatagtagcatctctttccaaatcaccttttattta
tcctacctaagactgttttactttaacatcagcactctgtttgaaagttt
tttgaaaacttgaatctggggtttctcttgatatatctaggcagttttac
tgacacagcctatcctgcttcaattacgatctctttctcagcacagtgtt
ccgcatactctggtgtttcccatgatcatatcctgtgggttcaatctact
ccactgctttcaatagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_29772386_29773555
seq2: B6Ng01-107O17.b_49_1196

seq1  GAATTCTTTGTTTAGCTCTGAAGCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAAGCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTTTAATTATGTTTTAAAAAACAAAAATGAGATAACATTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTTTAATTATGTTTTAAAAAACAAAAATGAGATAACATTTTAC  100

seq1  CTATCATCAGTAAGTTTCACTCTTAAAGCTTTCAAATTTTCCTTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATCAGTAAGTTTCACTCTTAAAGCTTTCAAATTTTCCTTTCTCCT  150

seq1  TGACACCTATACACATATCATCCTAAAATTTCCACTTATATTTGTAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTATACACATATCATCCTAAAATTTCCACTTATATTTGTAGTAT  200

seq1  GTCTCCTCAACTGCTTCTAAACTTTATAACAAAGGAAAACTACATGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCAACTGCTTCTAAACTTTATAACAAAGGAAAACTACATGTAAC  250

seq1  CCTCCACCACCTATACACTATAGCATAATACTTATTATATATTACATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCACCTATACACTATAGCATAATACTTATTATATATTACATATT  300

seq1  ACATATCATATATTAGTATTATATATATAACACAAGTATTATTGAGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCATATATTAGTATTATATATATAACACAAGTATTATTGAGACTC  350

seq1  AATAAATATGTATTAGTCAATAGAGCAAGTTCAACCTCATTTGGTGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATGTATTAGTCAATAGAGCAAGTTCAACCTCATTTGGTGCTAA  400

seq1  ATTGCTCACAAGGATGATTGTTCCTCTCACTCTGGTGCTGGAGAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCACAAGGATGATTGTTCCTCTCACTCTGGTGCTGGAGAAAATAA  450

seq1  AGATACTCAAAGCCTTTTTTCCTATCCAGTTCTGTCCATGACAACAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTCAAAGCCTTTTTTCCTATCCAGTTCTGTCCATGACAACAAAGC  500

seq1  AAAAACAGTGTAGGAAAAAAAATTCACATCTGTACACAATACTCTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGTGTAGGAAAAAAAATTCACATCTGTACACAATACTCTGTCTT  550

seq1  GTCAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAACCAAGTCACGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAACCAAGTCACGTGTG  600

seq1  ACTAAATGTAGTCTGAAGTCTGAGTAAGAAGACAAGAGGAACTTTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGTAGTCTGAAGTCTGAGTAAGAAGACAAGAGGAACTTTTCAGA  650

seq1  TTGTTGTAAATATTATTTTACTGCAATGCTGTTATTGACACTTTAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTAAATATTATTTTACTGCAATGCTGTTATTGACACTTTAAATGC  700

seq1  AGTTCACATCCCAGAAGCATAGGCATGGATGGGGCTCATGCTAAGATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACATCCCAGAAGCATAGGCATGGATGGGGCTCATGCTAAGATTTC  750

seq1  ATAAATTGTCTGTCAACAACAGTGCATCAGCTTTCTGTGGGAAGAGTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGTCTGTCAACAACAGTGCATCAGCTTTCTGTGGGAAGAGTACT  800

seq1  TGGAGTAGATAGAATAATTTATCACCAGAAATCGAGGTGTCTAGCACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAGATAGAATAATTTATCACCAGAAATCGAGGTGTCTAGCACAGT  850

seq1  TTTGCACCCTATAAACTTCATCTTAGCAGATAGCTGTCTCATCAGCTCTC  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTCTATAAACTTCATCTTAGCAGATAGCTGTCTCATCAGCTCTC  900

seq1  CATTTTATTGATGTTTTATTATTCATAATAGTCACTTGTACTCAAATATT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATTTTATTGATGTTTTATTATTCATAATAGTCACTTGTACTC-AATATT  949

seq1  CCATAATATAGATTGGCTTCTACTCAGTACACATACATGCACACACACAC  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAT-ATATAGATTGGCTTCTACTCAGTACACATACATGCACACACACAC  998

seq1  ACATACACCACATGCAAACACACATACACCATACACATGTACATACACAC  1050
       |||||||||||||| |||||||||||| ||||||||||||| ||| |||
seq2  -CATACACCACATGC-AACACACATACA-CATACACATGTAC-TAC-CAC  1043

seq1  ACATGAGAGAGACACAGACACAGATACATACACACACTTACCACACACAC  1100
       ||||||||||| || ||| ||||||| ||| ||| |||||||||| |||
seq2  -CATGAGAGAGA-ACCGAC-CAGATACTTACCCACCCTTACCACAC-CAC  1089

seq1  ATATACCACACACATACACACACTATACATATGCACATACACACACATGA  1150
      |||   | ||| ||||||||| |||||| ||||| |||   ||| |||| 
seq2  ATA---CCCAC-CATACACAC-CTATAC-TATGC-CAT---CACCCATG-  1128

seq1  GAGAAAAAAGAGATAACTGC  1170
      || | |||||||||||||||
seq2  GAAAGAAAAGAGATAACTGC  1148

seq1: chr10_29912412_29913488
seq2: B6Ng01-107O17.g_68_1136 (reverse)

seq1  CCTCTATTGGAAAGGCAGTGGAGTAAGATTTGAAACCAACAGGATATGAT  50
      |||||||||  || |||||||||| |||||   |||| ||||||||||||
seq2  CCTCTATTG--AAAGCAGTGGAGT-AGATT--GAACCCACAGGATATGAT  45

seq1  CATTGGGAAAACACAGAGTATTGCGAACACTGTGCTGAGAAAGAGATCGT  100
      || |||||||   ||||||||   ||||||||||||||||||||||||||
seq2  CA-TGGGAAACACCAGAGTATGCGGAACACTGTGCTGAGAAAGAGATCGT  94

seq1  AATTGAGGCAGGATAGGCTGTGTCAGTAAAAACTGCCTAGATATATCAAG  150
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTGAAGCAGGATAGGCTGTGTCAGT-AAAACTGCCTAGATATATCAAG  143

seq1  AGAAACCCCAGATTTCAAGTTTTCAAAAAACTTTCAAACAGAGTGCTGAT  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCCAGA-TTCAAGTTTTCAAAAAACTTTCAAACAGAGTGCTGAT  192

seq1  GTTAAAGTAAAACAGTCTTAGGTAGGATAAATAAAAGGTGATTTGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTAAAACAGTCTTAGGTAGGATAAATAAAAGGTGATTTGGAAAG  242

seq1  AGATGCTACTATTTAAGTAAAACTGATTATGGCTATATTACTGCTGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTACTATTTAAGTAAAACTGATTATGGCTATATTACTGCTGTACT  292

seq1  GTCCAGCCTTTTAAATGAAGCCAGAAATTTAATTTCTATGTGTAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCCTTTTAAATGAAGCCAGAAATTTAATTTCTATGTGTAATTTAA  342

seq1  TTTTTAAATAGTACAGTCTAATTCACTTTTTTTCCCCCCTTGCAGGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATAGTACAGTCTAATTCACTTTTTTTCCCCCCTTGCAGGCCAA  392

seq1  GTATAGTATCTGCCCTGCCTGCTTACAGCCTCTGCTTGGTTCTTCCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTATCTGCCCTGCCTGCTTACAGCCTCTGCTTGGTTCTTCCTTAC  442

seq1  CAGCACAGCTGAAGAAATCCCTCCCATCTGAGATTTCCTATGGTAATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGCTGAAGAAATCCCTCCCATCTGAGATTTCCTATGGTAATGTA  492

seq1  TTAGCTACCATGGCCTCAAGGTATAAATCTCAAATTCTTTCCAATGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACCATGGCCTCAAGGTATAAATCTCAAATTCTTTCCAATGGACA  542

seq1  CTATACTCAATAAAAAGATATTGGTGACTGTGACTCTCTCAGAATAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTCAATAAAAAGATATTGGTGACTGTGACTCTCTCAGAATAAGCA  592

seq1  CACCAAGACTTAATAGAACTAGCCATTTTTCCTTTTATTGCACAATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGACTTAATAGAACTAGCCATTTTTCCTTTTATTGCACAATTTTA  642

seq1  TATTAACTAGAAATGTTTTTAAGTTAAATTAAGCATACAGGCCAAAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTAGAAATGTTTTTAAGTTAAATTAAGCATACAGGCCAAAGCAA  692

seq1  CTCCAACTTTACAGGAGATATATCTTTGACACAATTTTCCTTCCAGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTTTACAGGAGATATATCTTTGACACAATTTTCCTTCCAGCACT  742

seq1  TTATCTTATTATATACAACTTCAAGAAGAGTGCTTCCAGAACTGAAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATTATATACAACTTCAAGAAGAGTGCTTCCAGAACTGAAAACC  792

seq1  CTTTCTAATACAAATATTTTTTAAAGGAAAATTAAATTCCCAGAGAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAATACAAATATTTTTTAAAGGAAAATTAAATTCCCAGAGAGCTG  842

seq1  GGAATATTGTTCATCAGCAACATAGTTCCCTAGCATCCATGAGGACCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTGTTCATCAGCAACATAGTTCCCTAGCATCCATGAGGACCTGG  892

seq1  ATTCAAGCCTTAGAAACAATAAAACTACAAGATCACAGGAGAAAATCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCCTTAGAAACAATAAAACTACAAGATCACAGGAGAAAATCAGA  942

seq1  AGTGAAGAGGCCAGAGGCAGGGAGAAATAAATGCTGGAGATGGCTGTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAGGCCAGAGGCAGGGAGAAATAAATGCTGGAGATGGCTGTTTA  992

seq1  GTAAGATAGTGCCTTCCCTTTAGGACCCTTACACAAATAATACATACAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAGTGCCTTCCCTTTAGGACCCTTACACAAATAATACATACAAA  1042

seq1  ATAAAGACATTCTTTGGCTCAGAATTC  1077
      |||||||||||||||||||||||||||
seq2  ATAAAGACATTCTTTGGCTCAGAATTC  1069