BAC Information

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BAC

Clone NameB6Ng01-108D18
Chromosome10 (Build37)
Map Location 79,001,277 - 79,159,292
singlet/doubletdoublet
Overlap geneMier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm
Upstream geneOlfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c
Downstream geneBsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108D18.bB6Ng01-108D18.g
ACCDH915471DH915472
length1,2151,050
definitionDH915471|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D18, 5' end.DH915472|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,158,053 - 79,159,292)(79,001,277 - 79,002,331)
sequence
gaattcttgccctgcccaccccagcctcctgcgtgctaggctcccagatc
tgttgcttccaggcatgcccttctctgtcgataaaccccagctaatctgc
tgatacctttgaaacctatttgactgaaccagggccagccagagtccaga
agccaggtgaggcaggtgggatcctccctagggcagggtagagatcgagg
ctgagccaatttagaattctgggacaaagtgcaggtgggaaaataagccg
tccaaggcatttaagcttcaatgctgtaattccgccctctgactcctggc
tggccttttacagacttcctgttctcacaaagctctttttgtgcaagaga
gaagggggttagcgcaatggagcatgctccctagcaccaggctcaagagg
gcttgtggaacacgcctgtcaccccagcatctaggaggtggaagcaggca
caccaggacctcaaggtcatcttcggctaccttagacacagggtgtttga
ggccagcctgggctgcgtggaactctctctcaaaggaagaaaagaatgtt
ctgggagaaggctgcagagataggtggcccccaccttgcgacaggctgtt
tcgcaggcagcccaggttgactttggaatggaagcaatcctacctcagcc
tcccgatggcagagctgacaggactgggctgagggccatgttttccaggc
acgcttggcactaacttctctattagacttgtgatggtttctttcctgcc
aatgcatttttctgtccagttaatttagagcccaaggaaaccaggtagag
gagggagggtcttacccccaccaccataagaagggactttgaggacatca
agctcaatgtagaccttgacacaacaaaggccatccagtatgagcggaca
tggcagcaggaagagtccagggaggtttgtgcgagcaggcggggattggc
ttcgtgtgagtggagcacagtgatggatgttctggaaccgatgctggtct
actgatacccactggagtgacacttgctgctctgtcgaggtgtcagtaaa
cagaagtttgggacggtcatgtgagcttccaatctcctcccacctcatgt
gatagacacagaggtagcttgcaccctcctgcttgtcaactgttgcattg
ctctgcctgctccacagcctgttccaggaactctcctggacgcatcctga
agctcacctctcatc
gaattcatgagggtggcctggcatctgccccagctgcagatggcgagggc
tggcagcctgctctcctccccaagtcttcaatgtccagtacaaagcagac
acagatgctgatggcaagcacagaactcaccagtccaatgcagactccag
ggtggctcctcctaattctagcccacttcaagtcccccgacatacactct
gtagcagcccagaaccctcctaggctctgtaccacttctccgaatcccca
aacctcttagtctgggagagtgttctatggattggcctatgctccccaca
accaagcaaagcatgccagacatggtaaaggctcattcctctcaactgtc
cctacacactcaaacagaaaatcccgtctcactatggccatgagacccaa
gaaatctcactcagggctgccagccacaaaccaggcatggcaggaacacc
agcctcctgaggcttcctactcaaaccaaccacataagactcacatcctc
agaaaccgagaggaagaaacaggaagcaaagctgcctctgcaggaagtga
gctgagggcacaggaatgtgaaccaatgacccaaatctgcagtcaggtgg
cttgtctaacatacccgggtatgttgtgtatggttgcttgggtctataat
cccagtagtcaggaaacggagatagggagttcctaaaactcagggccagc
ctgggctacacagtgagtttggtgccagtctaggctttaaaaaagaaaga
aaaataaataaaaacagtgccagagagacagctcagcagcttgtatgttg
tcaaagagtccagcctggtctacaaagtgagttgcagggctacagagaga
aacactgtctcaaaaaatttaaaaaaaaaaaaagaaagaagaaaagaaaa
agcagggctgggaatatggctgtggtagagcacatttgtcagtcgcgtgc
atgtccttgggagaacggcaggttcagaccagtctagtctacagagagag
cgtgaggcatcttaggctactagcaagatcctgtctgaacaaagcggaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79158053_79159292
seq2: B6Ng01-108D18.b_46_1260 (reverse)

seq1  GATGA-AGGTGACCCTTCAGGATGGCTGTCAGGAGAG-TCCTGGGACACA  48
      ||||| ||||||  ||||||||| ||   |||||||| |||||| |||  
seq2  GATGAGAGGTGA-GCTTCAGGAT-GCGTCCAGGAGAGTTCCTGGAACA--  46

seq1  GGCCTGCTG-GGAGGCAGAGCAAGAGCAATTGCAACAGTGTGGCCAGCAG  97
       | |||  | | |||||||||||       ||||||||| || | |||||
seq2  -GGCTGTGGAGCAGGCAGAGCAA-------TGCAACAGT-TGACAAGCAG  87

seq1  G-GGGTGCAAGCTACCCTCTGTGTCTATCACATGAGGTGGGAGGAGATGG  146
      | |||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GAGGGTGCAAGCTA-CCTCTGTGTCTATCACATGAGGTGGGAGGAGATTG  136

seq1  GAGGCTTCACATGGAACGTCCCCAACTTCTGTTTTACTGACACCTCGACA  196
      || || |||||| || |||||| |||||||| ||||||||||||||||||
seq2  GAAGC-TCACAT-GACCGTCCCAAACTTCTG-TTTACTGACACCTCGACA  183

seq1  GGAGCAGCCAAAGTGTCACTCCAGTGGGTATCAGTAGACCCAGCATCGGT  246
       |||||||  |||||||||||||||||||||||||||| |||||||||||
seq2  -GAGCAGC--AAGTGTCACTCCAGTGGGTATCAGTAGA-CCAGCATCGGT  229

seq1  TCCAGAACATTCCATCACTGTGCTTCCACCTCACACGAAGCCCAATCCCC  296
      ||||||||| ||||||||||||| |||| ||||||||||| |||||||||
seq2  TCCAGAACA-TCCATCACTGTGC-TCCA-CTCACACGAAG-CCAATCCCC  275

seq1  GCCCTGCTCCGCACAAACCTCCCTGGACTCTTCCTGCCTGCCATGTCCGC  346
      | |||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  G-CCTGCT-CGCACAAACCTCCCTGGACTCTTCCTG-CTGCCATGTCCGC  322

seq1  TCATACTGGATGGCCTTTGTTTGTGTCAAGGTCTACATTGAGCTTGATGT  396
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCATACTGGATGGCCTTTG-TTGTGTCAAGGTCTACATTGAGCTTGATGT  371

seq1  CCTCAAAGTCCCTTCTTATGGTGGTGGGGGTAAGACCCTCCCTCCTCTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGTCCCTTCTTATGGTGGTGGGGGTAAGACCCTCCCTCCTCTAC  421

seq1  CTGGTTTCCTTGGGCTCTAAATTAACTGGACAGAAAAATGCATTGGCAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCCTTGGGCTCTAAATTAACTGGACAGAAAAATGCATTGGCAGG  471

seq1  AAAGAAACCATCACAAGTCTAATAGAGAAGTTAGTGCCAAGCGTGCCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCATCACAAGTCTAATAGAGAAGTTAGTGCCAAGCGTGCCTGG  521

seq1  AAAACATGGCCCTCAGCCCAGTCCTGTCAGCTCTGCCATCGGGAGGCTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGGCCCTCAGCCCAGTCCTGTCAGCTCTGCCATCGGGAGGCTGA  571

seq1  GGTAGGATTGCTTCCATTCCAAAGTCAACCTGGGCTGCCTGCGAAACAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATTGCTTCCATTCCAAAGTCAACCTGGGCTGCCTGCGAAACAGC  621

seq1  CTGTCGCAAGGTGGGGGCCACCTATCTCTGCAGCCTTCTCCCAGAACATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGCAAGGTGGGGGCCACCTATCTCTGCAGCCTTCTCCCAGAACATT  671

seq1  CTTTTCTTCCTTTGAGAGAGAGTTCCACGCAGCCCAGGCTGGCCTCAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCCTTTGAGAGAGAGTTCCACGCAGCCCAGGCTGGCCTCAAAC  721

seq1  ACCCTGTGTCTAAGGTAGCCGAAGATGACCTTGAGGTCCTGGTGTGCCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGTCTAAGGTAGCCGAAGATGACCTTGAGGTCCTGGTGTGCCTG  771

seq1  CTTCCACCTCCTAGATGCTGGGGTGACAGGCGTGTTCCACAAGCCCTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTCCTAGATGCTGGGGTGACAGGCGTGTTCCACAAGCCCTCTT  821

seq1  GAGCCTGGTGCTAGGGAGCATGCTCCATTGCGCTAACCCCCTTCTCTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGTGCTAGGGAGCATGCTCCATTGCGCTAACCCCCTTCTCTCTT  871

seq1  GCACAAAAAGAGCTTTGTGAGAACAGGAAGTCTGTAAAAGGCCAGCCAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAAGAGCTTTGTGAGAACAGGAAGTCTGTAAAAGGCCAGCCAGG  921

seq1  AGTCAGAGGGCGGAATTACAGCATTGAAGCTTAAATGCCTTGGACGGCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGGCGGAATTACAGCATTGAAGCTTAAATGCCTTGGACGGCTT  971

seq1  ATTTTCCCACCTGCACTTTGTCCCAGAATTCTAAATTGGCTCAGCCTCGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCACCTGCACTTTGTCCCAGAATTCTAAATTGGCTCAGCCTCGA  1021

seq1  TCTCTACCCTGCCCTAGGGAGGATCCCACCTGCCTCACCTGGCTTCTGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCCTGCCCTAGGGAGGATCCCACCTGCCTCACCTGGCTTCTGGA  1071

seq1  CTCTGGCTGGCCCTGGTTCAGTCAAATAGGTTTCAAAGGTATCAGCAGAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTGGCCCTGGTTCAGTCAAATAGGTTTCAAAGGTATCAGCAGAT  1121

seq1  TAGCTGGGGTTTATCGACAGAGAAGGGCATGCCTGGAAGCAACAGATCTG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGGTTTATCGACAGAGAAGGGCATGCCTGGAAGCAACAGATCTG  1171

seq1  GGAGCCTAGCACGCAGGAGGCTGGGGTGGGCAGGGCAAGAATTC  1240
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAGCACGCAGGAGGCTGGGGTGGGCAGGGCAAGAATTC  1215

seq1: chr10_79001277_79002331
seq2: B6Ng01-108D18.g_68_1117

seq1  GAATTCATGAGGGTGGCCTGGCATCTGCCCCAGCTGCAGATGGCGAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGGGTGGCCTGGCATCTGCCCCAGCTGCAGATGGCGAGGGC  50

seq1  TGGCAGCCTGCTCTCCTCCCCAAGTCTTCAATGTCCAGTACAAAGCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCTGCTCTCCTCCCCAAGTCTTCAATGTCCAGTACAAAGCAGAC  100

seq1  ACAGATGCTGATGGCAAGCACAGAACTCACCAGTCCAATGCAGACTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCTGATGGCAAGCACAGAACTCACCAGTCCAATGCAGACTCCAG  150

seq1  GGTGGCTCCTCCTAATTCTAGCCCACTTCAAGTCCCCCGACATACACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCCTCCTAATTCTAGCCCACTTCAAGTCCCCCGACATACACTCT  200

seq1  GTAGCAGCCCAGAACCCTCCTAGGCTCTGTACCACTTCTCCGAATCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGCCCAGAACCCTCCTAGGCTCTGTACCACTTCTCCGAATCCCCA  250

seq1  AACCTCTTAGTCTGGGAGAGTGTTCTATGGATTGGCCTATGCTCCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTAGTCTGGGAGAGTGTTCTATGGATTGGCCTATGCTCCCCACA  300

seq1  ACCAAGCAAAGCATGCCAGACATGGTAAAGGCTCATTCCTCTCAACTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCAAAGCATGCCAGACATGGTAAAGGCTCATTCCTCTCAACTGTC  350

seq1  CCTACACACTCAAACAGAAAATCCCGTCTCACTATGGCCATGAGACCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACACTCAAACAGAAAATCCCGTCTCACTATGGCCATGAGACCCAA  400

seq1  GAAATCTCACTCAGGGCTGCCAGCCACAAACCAGGCATGGCAGGAACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCACTCAGGGCTGCCAGCCACAAACCAGGCATGGCAGGAACACC  450

seq1  AGCCTCCTGAGGCTTCCTACTCAAACCAACCACATAAGACTCACATCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTGAGGCTTCCTACTCAAACCAACCACATAAGACTCACATCCTC  500

seq1  AGAAACCGAGAGGAAGAAACAGGAAGCAAAGCTGCCTCTGCAGGAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCGAGAGGAAGAAACAGGAAGCAAAGCTGCCTCTGCAGGAAGTGA  550

seq1  GCTGAGGGCACAGGAATGTGAACCAATGACCCAAATCTGCAGTCAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGGCACAGGAATGTGAACCAATGACCCAAATCTGCAGTCAGGTGG  600

seq1  CTTGTCTAACATACCCGGGTATGTTGTGTATGGTTGCTTGGGTCTATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTAACATACCCGGGTATGTTGTGTATGGTTGCTTGGGTCTATAAT  650

seq1  CCCAGTAGTCAGGAAACGGAGATAGGGAGTTCCTAAAACTCAGGGCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGTCAGGAAACGGAGATAGGGAGTTCCTAAAACTCAGGGCCAGC  700

seq1  CTGGGCTACACAGTGAGTTTGGTGCCAGTCTAGGCTTTAAAAAAGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACACAGTGAGTTTGGTGCCAGTCTAGGCTTTAAAAAAGAAAGA  750

seq1  AAAATAAATAAAAACAGTGCCAGAGAGACAGCTCAGCAGCTTGTATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAAAACAGTGCCAGAGAGACAGCTCAGCAGCTTGTATGTTG  800

seq1  TCAAAGAGTCCAGCCTGGTCTACAAAGTGAGTTGCAGGGCTACAGAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGTCCAGCCTGGTCTACAAAGTGAGTTGCAGGGCTACAGAGAGA  850

seq1  AACACTGTCTCAAAAAATTTAAAAAAAAAAAAAGAAAGAAAGAAAAGAAA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACACTGTCTCAAAAAATTTAAAAAAAAAAAAAGAAAG-AAGAAAAGAAA  899

seq1  AAGCAGGGCTGGGAATATGGCTGTGGTAGAGCACATTTGTCAGTCGCGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGGCTGGGAATATGGCTGTGGTAGAGCACATTTGTCAGTCGCGTG  949

seq1  CATGGCCTTGGGAGAACGGCAGGTTCCAGACCAGCCTAGTCTACAGAGAG  1000
      |||| |||||||||||||||||||| |||||||| |||||||||||||||
seq2  CATGTCCTTGGGAGAACGGCAGGTT-CAGACCAGTCTAGTCTACAGAGAG  998

seq1  AGCGTGAGGCATCTTAGGCTACATAGCAAGACCCTGTCTGAAAACAAAGC  1050
      |||||||||||||||||||||| |||||||| ||||||||  ||||||||
seq2  AGCGTGAGGCATCTTAGGCTAC-TAGCAAGATCCTGTCTG--AACAAAGC  1045

seq1  AGAAA  1055
       ||||
seq2  GGAAA  1050