BAC Information

Click to search

BAC

Clone NameB6Ng01-108E13
Chromosome10 (Build37)7 (Build37)
Map Location 23,858,552 - 23,858,91851,073,040 - 51,073,258
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9
Downstream geneStx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108E13.bB6Ng01-108E13.g
ACCDH915509DH915510
length367313
definitionDH915509|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E13, 5' end.DH915510|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,858,552 - 23,858,918)(51,073,040 - 51,073,258)
sequence
actgagtttcctacctactcctcgcatcagttactaagaaacaagggtca
aagtctccagctaattgcagattttctctacttttccttctgtgtcagtc
agaatatacttcacttcccttcttgatctcttgagatctacctcaggtgt
tttgaatatgcttgacagagtgaatacacacataggattgccaaatcttc
tagtaacttatttctctttatttgaattggttaacatcagatcccaggct
tacagctgggctaattctgtggctctgttcatgctccagagagtctctgg
gttttggccaaaactagtctccagctgtacctggattctgtgtggggtat
ctgtggagtgtgtgtgt
tttgtttagctctgtacccaattttttcattacatgtttatttgattaaa
atatttttctcatataatatatctgtaccatggtttcccctccctctact
cctcccagttcttccctacctcgcctttcatccagatccaccccatttct
gtctcttactagaaaacaaacaggcatttatggaataataaaaaaataag
gtaaaattaaataaaatgaaacaaaacaactctgaataggacaaaacaga
agggaaggagcccaagaaaaagcacaatgatgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_23858552_23858918
seq2: B6Ng01-108E13.b_54_420 (reverse)

seq1  ACACACACACTCCACAGATACCCCACACAGAATCCAGGTACAGCTGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTCCACAGATACCCCACACAGAATCCAGGTACAGCTGGAGA  50

seq1  CTAGTTTTGGCCAAAACCCAGAGACTCTCTGGAGCATGAACAGAGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTGGCCAAAACCCAGAGACTCTCTGGAGCATGAACAGAGCCACA  100

seq1  GAATTAGCCCAGCTGTAAGCCTGGGATCTGATGTTAACCAATTCAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGCCCAGCTGTAAGCCTGGGATCTGATGTTAACCAATTCAAATAA  150

seq1  AGAGAAATAAGTTACTAGAAGATTTGGCAATCCTATGTGTGTATTCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATAAGTTACTAGAAGATTTGGCAATCCTATGTGTGTATTCACTC  200

seq1  TGTCAAGCATATTCAAAACACCTGAGGTAGATCTCAAGAGATCAAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCATATTCAAAACACCTGAGGTAGATCTCAAGAGATCAAGAAGG  250

seq1  GAAGTGAAGTATATTCTGACTGACACAGAAGGAAAAGTAGAGAAAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAGTATATTCTGACTGACACAGAAGGAAAAGTAGAGAAAATCTG  300

seq1  CAATTAGCTGGAGACTTTGACCCTTGTTTCTTAGTAACTGATGCGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGCTGGAGACTTTGACCCTTGTTTCTTAGTAACTGATGCGAGGAG  350

seq1  TAGGTAGGAAACTCAGT  367
      |||||||||||||||||
seq2  TAGGTAGGAAACTCAGT  367

seq1: chr7_51073040_51073258
seq2: B6Ng01-108E13.g_278_387 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGACAGATAGACAGACAGAAACACACACACACATCTCAGAAATAAAATAA  150
      | ||| | | ||| ||| | |||||||||||||||           ||  
seq2  ACACACACACACACACACACACACACACACACATC-----------ATTG  39

seq1  AACATAACTTTAAAAAAAAGACTTATTTATTTATTTATT----TATTTA-  195
        | |    ||        | ||  ||   || | | ||    |||| | 
seq2  TGCTTTTTCTT-------GGGCTCCTTCCCTTCTGTTTTGTCCTATTCAG  82

seq1  --TTTATTTATTT--ATTTATTTAATTT  219
        ||  ||| |||   ||||||||||||
seq2  AGTTGTTTTGTTTCATTTTATTTAATTT  110