BAC Information

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BAC

Clone NameB6Ng01-108H20
Chromosome10 (Build37)
Map Location 98,316,053 - 98,491,422
singlet/doubletdoublet
Overlap geneAtp2b1
Upstream geneEG667438, EG432494
Downstream geneWdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108H20.bB6Ng01-108H20.g
ACCDH915662DH915663
length1,1371,106
definitionDH915662|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H20, 5' end.DH915663|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,316,053 - 98,317,200)(98,490,306 - 98,491,422)
sequence
gaattcacatttttaaaaactatgttgttgtcctggaaatgttttacaag
ctatcctttttctacctgtatttggtaaatataaaaatattaaataactt
ccagattttttatagaatataatcaatattcagttttatattaaagtaca
aacattcttaaattaaaaattaagttattcaatgataaaataaagcttaa
agtgatttaaaaacaagtaataataaatgttagcatttaatgccttgtgt
cctacacaacaatattccctagaaccacgagacaattggttgatcagatg
ataaaataagcatacatttctggaaataagtggaaaaccttggacattat
ttctctccccattacctattttattttacaaagaaaatgaaacagagaaa
tacaattcactacctaggatcaggcaaggctgtcaggagaagttgctttt
caacgctatttctataagcgcatttctttctttcccaaatgaatcaccgt
gttccagggtaacaattacagccgccatgccctttgcatcgggaagctgc
acccacacaaatcaagccaatattatcagcgtggagacagccaaatgcct
ctgtgcttggacccttctttcaaggaagaatagctatcctgcacgattcc
atctttcaacataagagtacctagtaacattcattgttaattcacttatc
atgcttgccctggtcaaaagctgcaaaggaaacctgacctatgcttgcag
gttattgcctacaaagtctctaaaactggtaaactggaacaataacccac
atgactataaggtttcccaaagccccagaaaggaataacacctagaatca
ggaatgttttactgaataaaaaaggaaccaaaatgacaatattaacctat
taggagctttggttatactttttagaaattttaaaaaaatcatcccatac
atatggattatgtgatatctcatacttggcttactaatatttatgacgtt
tgatgtgtaaatttagcccagactaaacattagttagttttcatctgctt
tagtgagttgctgacaagaagatgctaagtatatattttgaatcagggaa
atgaccatgtcaattcatgggggcagggaggaagaga
gaattcctcctcataggtaccgagtatttgttgaatgcgaatgccagcgg
agcaggagatttgaacaacaaacccatcaaagcagttagcagctcattta
gcaggaaggaaggcagggaccaatgcccagacaatgatctaagatgacat
ggcaggatccgacaccttagaatcagatcggctctactgtttgacggccc
ttgcccctactgcacttcagaaatggagaagaattacttccctcaattct
acagcaggaaaacaaaccatcagcgacccttggcctcacagggggttcac
ctcggagcagacttatgaaaaggatccgaacctgaattttgaatgtcaca
cacttcaggtcttagtggccacttcttctccctcttctccccctccagct
attcattaagacatgctgcctcagactaaagactagtgatttccaaagcg
tcttattgagagaaagacttttagtatagtttacctcaatgaagataccg
taatgaccacggacgtcagctagcggcgtctcgtttttacaaaccaaagg
gacggagcattcacaaactgcatggctgcagatgatactaagactgaggc
catcagaaagggttgtgacccacttagacttgactcactgaaatctgatg
tgcaagtgtctgtcgcgtgagctgaatattaacgcattaagagtttttat
caaggaagatactgttgctacacaaaatatctcactaaaataaactcaag
ggggttgaggggtagatgggatctcaaatatagctaggaaaatttcaaag
ggtacataaaggaagagcaaaagaagcgtgaggcgtgtctaagtagtgta
ttcattctgtagtacagtttttcttctttacagaggacaagagtactcgt
cgtattaaagtgataaactctcatcccacatgattaataaaagtgctgac
ctttaatgctacctatggaacttcaaacaccagctcagacttcttactga
gtatgtgacgacgtctctgtctagctcctctgactggtgaggagacttgg
gctacttacttctaaggcagtgcactctgcctcagccttgagcttgtgtt
agaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_98316053_98317200
seq2: B6Ng01-108H20.b_45_1181

seq1  GAATTCACATTTTTAAAAACTATGTTGTTGTCCTGGAAATGTTTTACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTTAAAAACTATGTTGTTGTCCTGGAAATGTTTTACAAG  50

seq1  CTATCCTTTTTCTACCTGTATTTGGTAAATATAAAAATATTAAATAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTTTTCTACCTGTATTTGGTAAATATAAAAATATTAAATAACTT  100

seq1  CCAGATTTTTTATAGAATATAATCAATATTCAGTTTTATATTAAAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTTTTATAGAATATAATCAATATTCAGTTTTATATTAAAGTACA  150

seq1  AACATTCTTAAATTAAAAATTAAGTTATTCAATGATAAAATAAAGCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTTAAATTAAAAATTAAGTTATTCAATGATAAAATAAAGCTTAA  200

seq1  AGTGATTTAAAAACAAGTAATAATAAATGTTAGCATTTAATGCCTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTAAAAACAAGTAATAATAAATGTTAGCATTTAATGCCTTGTGT  250

seq1  CCTACACAACAATATTCCCTAGAACCACGAGACAATTGGTTGATCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACAACAATATTCCCTAGAACCACGAGACAATTGGTTGATCAGATG  300

seq1  ATAAAATAAGCATACATTTCTGGAAATAAGTGGAAAACCTTGGACATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAGCATACATTTCTGGAAATAAGTGGAAAACCTTGGACATTAT  350

seq1  TTCTCTCCCCATTACCTATTTTATTTTACAAAGAAAATGAAACAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCCATTACCTATTTTATTTTACAAAGAAAATGAAACAGAGAAA  400

seq1  TACAATTCACTACCTAGGATCAGGCAAGGCTGTCAGGAGAAGTTGCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCACTACCTAGGATCAGGCAAGGCTGTCAGGAGAAGTTGCTTTT  450

seq1  CAACGCTATTTCTATAAGCGCATTTCTTTCTTTCCCAAATGAATCACCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTATTTCTATAAGCGCATTTCTTTCTTTCCCAAATGAATCACCGT  500

seq1  GTTCCAGGGTAACAATTACAGCCGCCATGCCCTTTGCATCGGGAAGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGGTAACAATTACAGCCGCCATGCCCTTTGCATCGGGAAGCTGC  550

seq1  ACCCACACAAATCAAGCCAATATTATCAGCGTGGAGACAGCCAAATGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACAAATCAAGCCAATATTATCAGCGTGGAGACAGCCAAATGCCT  600

seq1  CTGTGCTTGGACCCTTCTTTCAAGGAAGAATAGCTATCCTGCACGATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTGGACCCTTCTTTCAAGGAAGAATAGCTATCCTGCACGATTCC  650

seq1  ATCTTTCAACATAAGAGTACCTAGTAACATTCATTGTTAATTCACTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAACATAAGAGTACCTAGTAACATTCATTGTTAATTCACTTATC  700

seq1  ATGCTTGCCCTGGTCAAAAGCTGCAAAGGAAACCTGACCTATGCTTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCCCTGGTCAAAAGCTGCAAAGGAAACCTGACCTATGCTTGCAG  750

seq1  GTTATTGCCTACAAAGTCTCTAAAACTGGTAAACTGGAACAATAACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCCTACAAAGTCTCTAAAACTGGTAAACTGGAACAATAACCCAC  800

seq1  ATGACTATAAGGTTTCCCAAAGCCCCAGAAAGGAATAACACCTAGAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATAAGGTTTCCCAAAGCCCCAGAAAGGAATAACACCTAGAATCA  850

seq1  GGAATGTTTTACTGAATAAAAAAGGAACCAAAATGACAATATTAACCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTTTACTGAATAAAAAAGGAACCAAAATGACAATATTAACCTAT  900

seq1  TAGGAGCTTTGGTTATACTTTTTAGAAATTTTAAAAAAAATCATCCCATA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGGAGCTTTGGTTATACTTTTTAGAAATTTT-AAAAAAATCATCCCATA  949

seq1  CATATGGATTATGTGATATCTCATACTTGGCTTACTAATATTTATGACGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGATTATGTGATATCTCATACTTGGCTTACTAATATTTATGACGT  999

seq1  TTGATGTGTTAAAATTTAGCCCAAGACTAAACATTAGTTAGTTTTCATTC  1050
      |||||||||  ||||||||||| |||||||||||||||||||||||| ||
seq2  TTGATGTGT--AAATTTAGCCC-AGACTAAACATTAGTTAGTTTTCA-TC  1045

seq1  TGCCTTAAGTTGAGTTTGCTGACAAG-AGATGCTAAAGTATATATTTGTA  1099
      ||| |||   |||| ||||||||||| ||||||| ||||||||||||  |
seq2  TGCTTTA--GTGAG-TTGCTGACAAGAAGATGCT-AAGTATATATTTTGA  1091

seq1  TGCAGGGAAAATGACCCATGTCACATTCATGGGGGCAGGGAGGAAGAGA  1148
        ||||| |||||| |||||||| |||||||||||||||||||||||||
seq2  ATCAGGG-AAATGA-CCATGTCA-ATTCATGGGGGCAGGGAGGAAGAGA  1137

seq1: chr10_98490306_98491422
seq2: B6Ng01-108H20.g_68_1173 (reverse)

seq1  ACTTCTAAACAACAGCTCAAAGACTGAGGCAGAGTGGCACTGCCTAAGAT  50
      |||||| ||||  ||||| ||| |||||||||||| ||||||||| ||| 
seq2  ACTTCT-AACACAAGCTC-AAGGCTGAGGCAGAGT-GCACTGCCTTAGAA  47

seq1  GTAAGTAGCCCAAGCTCTCCTCACAGGTCAGAGGAAGCTAGGACAGAGAC  100
      |||||||||||||| |||||||||  |||||||| ||||| |||||||||
seq2  GTAAGTAGCCCAAG-TCTCCTCACCAGTCAGAGG-AGCTA-GACAGAGAC  94

seq1  GTTCGTCACATACTTCAGTTAGAAGTTCTGAGCTGGGTGGTTTTGAAGTT  150
      | ||||||||||| ||||| ||||| |||||||| ||||  |||||||||
seq2  G-TCGTCACATAC-TCAGTAAGAAG-TCTGAGCT-GGTG--TTTGAAGTT  138

seq1  CCATAGGTAGCATTAAAGGTCAGCACTTTTATTAATCATGTGGGATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGTAGCATTAAAGGTCAGCACTTTTATTAATCATGTGGGATGAGA  188

seq1  GTTTATCACTTTAATACGACGAGTACTCTTGT-CTCTGTAAAGAAGAAAA  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTTATCACTTTAATACGACGAGTACTCTTGTCCTCTGTAAAGAAGAAAA  238

seq1  ACTGTAACTACAGAATGAATACACTACTTAGACACGCCTCACGCTTCTTT  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGT-ACTACAGAATGAATACACTACTTAGACACGCCTCACGCTTCTTT  287

seq1  TGCTCTTCC-TTATGTACCCTTTGAAATTTTCCTAGCTATATTTGAGATC  348
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCTTTATGTACCCTTTGAAATTTTCCTAGCTATATTTGAGATC  337

seq1  CCATCTACCCCTCAACCCCCTTGAGTTTATTTTAGTGAGATATTTTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACCCCTCAACCCCCTTGAGTTTATTTTAGTGAGATATTTTGTGT  387

seq1  AGCAACAGTATCTTCCTTGATAAAAACTCTTAATGCGTTAATATTCAGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTATCTTCCTTGATAAAAACTCTTAATGCGTTAATATTCAGCT  437

seq1  CACGCGACAGACACTTGCACATCAGATTTCAGTGAGTCAAGTCTAAGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGACAGACACTTGCACATCAGATTTCAGTGAGTCAAGTCTAAGTGG  487

seq1  GTCACAACCCTTTCTGATGGCCTCAGTCTTAGTATCATCTGCAGCCATGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACCCTTTCTGATGGCCTCAGTCTTAGTATCATCTGCAGCCATGC  537

seq1  AGTTTGTGAATGCTCCGTCCCTTTGGTTTGTAAAAACGAGACGCCGCTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGAATGCTCCGTCCCTTTGGTTTGTAAAAACGAGACGCCGCTAG  587

seq1  CTGACGTCCGTGGTCATTACGGTATCTTCATTGAGGTAAACTATACTAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGTCCGTGGTCATTACGGTATCTTCATTGAGGTAAACTATACTAAA  637

seq1  AGTCTTTCTCTCAATAAGACGCTTTGGAAATCACTAGTCTTTAGTCTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCTCTCAATAAGACGCTTTGGAAATCACTAGTCTTTAGTCTGAG  687

seq1  GCAGCATGTCTTAATGAATAGCTGGAGGGGGAGAAGAGGGAGAAGAAGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATGTCTTAATGAATAGCTGGAGGGGGAGAAGAGGGAGAAGAAGTG  737

seq1  GCCACTAAGACCTGAAGTGTGTGACATTCAAAATTCAGGTTCGGATCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAAGACCTGAAGTGTGTGACATTCAAAATTCAGGTTCGGATCCTT  787

seq1  TTCATAAGTCTGCTCCGAGGTGAACCCCCTGTGAGGCCAAGGGTCGCTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGTCTGCTCCGAGGTGAACCCCCTGTGAGGCCAAGGGTCGCTGA  837

seq1  TGGTTTGTTTTCCTGCTGTAGAATTGAGGGAAGTAATTCTTCTCCATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTTTTCCTGCTGTAGAATTGAGGGAAGTAATTCTTCTCCATTTC  887

seq1  TGAAGTGCAGTAGGGGCAAGGGCCGTCAAACAGTAGAGCCGATCTGATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGCAGTAGGGGCAAGGGCCGTCAAACAGTAGAGCCGATCTGATTC  937

seq1  TAAGGTGTCGGATCCTGCCATGTCATCTTAGATCATTGTCTGGGCATTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTCGGATCCTGCCATGTCATCTTAGATCATTGTCTGGGCATTGG  987

seq1  TCCCTGCCTTCCTTCCTGCTAAATGAGCTGCTAACTGCTTTGATGGGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCTTCCTTCCTGCTAAATGAGCTGCTAACTGCTTTGATGGGTTT  1037

seq1  GTTGTTCAAATCTCCTGCTCCGCTGGCATTCGCATTCAACAAATACTCGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCAAATCTCCTGCTCCGCTGGCATTCGCATTCAACAAATACTCGG  1087

seq1  TACCTATGAGGAGGAATTC  1117
      |||||||||||||||||||
seq2  TACCTATGAGGAGGAATTC  1106