BAC Information

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BAC

Clone NameB6Ng01-108J20
Chromosome4 (Build37)10 (Build37)
Map Location 81,045,934 - 81,046,67347,829,925 - 47,830,288
singlet/doubletsingletsinglet
Overlap geneMpdz
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108J20.bB6Ng01-108J20.g
ACCDH915754DH915755
length1,016364
definitionDH915754|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J20, 5' end.DH915755|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,045,934 - 81,046,673)(47,829,925 - 47,830,288)
sequence
gaattctgaggattgggatctgccccgcgcaggagctctttgcctgagca
tcagcaacaaacatctcagttcccgggacccctcctagtgtatcctgcac
agacagctggccattttcccggccagaggatagggatctgccctgcgcag
gagtgctttgcctgagcattggcagcagacatcttagttccaggaccctg
cctagggtactctgcacagacatcttggttccaggaccccgccgagtgta
ccctgcacagatccagagaataacagatggcgaaaggcaaatgtaagaat
tctactaacagaaatcaagaccactcactatcatcagaacgcagtactcc
cacgccacctaatcctgagcaccccaacacaacagaaaagctagacccag
atttaaaagcatatctcatgatgatggtagaggacatcaagaagaacttt
aataactcacttaaagaaatacaggagaaaactgctaaagagttacaagt
ccttaaagaaaaacaggaaaacacaaccaaacaggtaaagaagtccttat
agaaaaacaggaaaacacatccaaaaaggtgatggaaatgaacaaaatca
tactagacctaaaaagggaagtagaggcaataaagaaaacccaaagggag
gcaacgttggagatagaaaccctaggaaagaaatctggaaccatagacgg
gagcatcagcaacagaatacaagagatggaagagagaatctcgggtgcag
aagattccatagagaacatctgcacaacaatcaaagataatacaaaacgc
aaaaagatcctaactcaaaacatccaggaaatccaggacacaatgagaag
accaaacctacagataataggagttgatgagaatgaagattttcaactta
aagggccagaaaatatattcacaaaattatagaagaaaacttcccaaacc
taaagaatgacatgcccatgaacatacagaagcctacagaactccaaata
gactgggccagaaaga
gaattctaggggggtcaagctttctttgggtgtgatttcattgggtaggg
ctgtagcacattgtcactcccaggctcagatctaaaatctcatttcaaat
gaggatcatcatttaatttttaagtatttcttatatatttgaaaggtaat
gagattatgccctcctctatttaaaataaatcaaataagtaaaatttaca
cccaaaaatcaaaatgttacaacaaggaatagtttaaaaaataagtaatg
aacagtggcttctctgtgatatactattgagtaagtctagaggcaaaaac
aaattttatatatatatatatatatatatatatatatatatatatatata
tataaaggaggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81045934_81046673
seq2: B6Ng01-108J20.b_45_786

seq1  GAATTCTGAGGATTGGGATCTGCCCAGCACAGGAGCACTTTGCCTGAGCA  50
      ||||||||||||||||||||||||| || ||||||| |||||||||||||
seq2  GAATTCTGAGGATTGGGATCTGCCCCGCGCAGGAGCTCTTTGCCTGAGCA  50

seq1  TCTGCAGGAGACATCTCTGTT-CCGGGACCCCGCCTAGTGTATCCTGCAC  99
      || |||  | ||||||| ||| |||||||||| |||||||||||||||||
seq2  TCAGCAACAAACATCTCAGTTCCCGGGACCCCTCCTAGTGTATCCTGCAC  100

seq1  AGACAGCTGGCCATTTTCCCGGACAGAGGATAGGGATCTGCCCGGCATGG  149
      |||||||||||||||||||||| |||||||||||||||||||| ||   |
seq2  AGACAGCTGGCCATTTTCCCGGCCAGAGGATAGGGATCTGCCCTGCGCAG  150

seq1  GAGCATTTTGCCTGAGCAACAGCAGCAGACATCTTGGTTCCGGGACCCTG  199
      |||   ||||||||||||   |||||||||||||| ||||| ||||||||
seq2  GAGTGCTTTGCCTGAGCATTGGCAGCAGACATCTTAGTTCCAGGACCCTG  200

seq1  CCGAGTATACCCTGCACAGAGAATCATGGTTCCAGGACCCCGCCAAGTGT  249
      || ||  ||| |||||||||  ||| |||||||||||||||||| |||||
seq2  CCTAGGGTACTCTGCACAGA-CATCTTGGTTCCAGGACCCCGCCGAGTGT  249

seq1  ATCCTGCACAGCTCCAGAGAATACCAGATGGCGAAAGGCAAGCATAAGAA  299
      | ||||||||| ||||||||||| |||||||||||||||||   ||||||
seq2  ACCCTGCACAGATCCAGAGAATAACAGATGGCGAAAGGCAAATGTAAGAA  299

seq1  TCCTACTAACAGAAACCAAGACCACTCACCATCATCAGAACGCAGCACTC  349
      | ||||||||||||| ||||||||||||| ||||||||||||||| ||||
seq2  TTCTACTAACAGAAATCAAGACCACTCACTATCATCAGAACGCAGTACTC  349

seq1  CCACGCCACCTAGCCCTGGGCACCCCAACACAACCGAAAAGCTAGACCCG  399
      ||||||||||||  |||| ||||||||||||||| |||||||||||||| 
seq2  CCACGCCACCTAATCCTGAGCACCCCAACACAACAGAAAAGCTAGACCCA  399

seq1  GATTTAAAAGCATATCTCATGATGATGGTAGAGGACATCAAGAAGGACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATTTAAAAGCATATCTCATGATGATGGTAGAGGACATCAAGAAGAACTT  449

seq1  TAATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTATAAG  499
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TAATAACTCACTTAAAGAAATACAGGAGAAAACTGCTAAAGAGTTACAAG  499

seq1  TCCTTAAAGAAAAGCAGGAAAACACAACAAAACAGGT--AGAAGTCCTTA  547
      ||||||||||||| |||||||||||||| ||||||||  |||||||||||
seq2  TCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAAAGAAGTCCTTA  549

seq1  TAGAAAAACAAGAAAACACAAACAAACAGGTGATGGAAATGAACAAAACC  597
      |||||||||| |||||||||  |||| ||||||||||||||||||||| |
seq2  TAGAAAAACAGGAAAACACATCCAAAAAGGTGATGGAAATGAACAAAATC  599

seq1  ATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGA  647
      ||||||||||||||||||||||||||  ||||||||||||||||||| ||
seq2  ATACTAGACCTAAAAAGGGAAGTAGAGGCAATAAAGAAAACCCAAAGGGA  649

seq1  GGCAACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATG  697
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  GGCAACGTTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGACG  699

seq1  CCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTC  740
        |||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTC  742

seq1: chr10_47829925_47830288
seq2: B6Ng01-108J20.g_69_432 (reverse)

seq1  TATCCTCCTTTATATATATATATATATATATATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCCTTTATATATATATATATATATATATATATATATATATATATA  50

seq1  TATATATAAAATTTGTTTTTGCCTCTAGACTTACTCAATAGTATATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAAATTTGTTTTTGCCTCTAGACTTACTCAATAGTATATCACA  100

seq1  GAGAAGCCACTGTTCATTACTTATTTTTTAAACTATTCCTTGTTGTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCACTGTTCATTACTTATTTTTTAAACTATTCCTTGTTGTAACA  150

seq1  TTTTGATTTTTGGGTGTAAATTTTACTTATTTGATTTATTTTAAATAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTTTGGGTGTAAATTTTACTTATTTGATTTATTTTAAATAGAG  200

seq1  GAGGGCATAATCTCATTACCTTTCAAATATATAAGAAATACTTAAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATAATCTCATTACCTTTCAAATATATAAGAAATACTTAAAAATT  250

seq1  AAATGATGATCCTCATTTGAAATGAGATTTTAGATCTGAGCCTGGGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGATCCTCATTTGAAATGAGATTTTAGATCTGAGCCTGGGAGTG  300

seq1  ACAATGTGCTACAGCCCTACCCAATGAAATCACACCCAAAGAAAGCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGCTACAGCCCTACCCAATGAAATCACACCCAAAGAAAGCTTGA  350

seq1  CCCCCCTAGAATTC  364
      ||||||||||||||
seq2  CCCCCCTAGAATTC  364