BAC Information

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BAC

Clone NameB6Ng01-109H08
ChromosomeX (Build37)10 (Build37)
Map Location 67,071,058 - 67,072,284104,054,096 - 104,054,281
singlet/doubletsingletsinglet
Overlap geneAff2
Upstream geneLOC100040244, EG627927, LOC666882, LOC671950, LOC100040255, EG666577
Downstream gene1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109H08.bB6Ng01-109H08.g
ACCDH916360DH916361
length1,195373
definitionDH916360|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H08, 5' end.DH916361|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,071,058 - 67,072,284)(104,054,096 - 104,054,281)
sequence
gaattccacagttcccagaattcagatggtgcacaatggtccataatgag
cagcacctgtgcttacctcaattaccagacagctctgaacagcggcacaa
agggcttactagatttttttcaataatagatttagttatgtctttcataa
ttggattcaaaagctcaaaatttcattttccaacttgttcataaaatttg
tatgaaaaagtctggcatttactcaaaagaaatagtctgtgaagaaaaaa
aaaaaaaaccctgcaaaacagccaaccattggtaactaagcagccaaatt
atagtccaagcacttggcaaatacaccgtctttttattatttcagtaatt
gaatttctgttaaagcacggagcataatttaacatgaggaatttatttat
aatacaatagcgtttcagtaataaatgcattattattgtcacttttaatg
gagtcttatgtattccctctgagactgtgaggcagacttagagacagcca
ctgcaccagtgctgtttgtagacaattgaattaattggagacagggtcat
taactcgacctgaatacctctgattgcttctgtaaataaggttagagagc
aaatggctaatcttcgttgtcattatagattcctcttacattttcacact
gccatgtatattaaaatcattttgctaagcagcttttcagactctctgta
tatttacagtatcatcttgcatggcacataaccataattgtatcagactt
atattacattccccatatctttataaaacatgatactagaaaagaatcta
tgttgaatcacatctcataaaaaccatccgaccaacaaatgaataaacca
cagtatataaaacatcatattaaaggaaagtaaaatcacaaagcaaaagt
tgccttgttttcctgttgcagatacatttttagatacacaattaatgcat
aatgagttctcaaagatgcaatctctaagaaatagcataggcagagaagc
attggttaaaacctcctgggcttcatttgagctctggagtcatgcccttt
tgccctctgtacaacataatacatgcaataataacatgcaacattggagt
cttctttctgttcattctaaaaggataactaattcatttaacaagaatta
aaagattaatctttattctggaattttttctatcacttcttgttg
tcaattgaggagacttgaatggtcaagaagcacgtaaagaaacgttcagc
atccttagtcatcaaggaaattcaagtcaaaacaaccctgagaccccacc
tcacaccagtaaaaatggctaagatcagaaattcaggtgacagtagatgc
tggcgaggatgtggagaaagaggaacactcctccattgctggtgggattg
caagctggtacaatcactctggaaatcagtctggcggttcctcagaaaat
tggacatagtacactacctgaggacccagatgatgctctaacatgtaata
aggacacatgatccactatgttcaaagaaaccttataatagccagaagct
ggaaacagtcaagatgtccctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_67071058_67072284
seq2: B6Ng01-109H08.b_51_1245

seq1  GAATTCCACAGTTCCCAGAATTCAGATGGTGCACAATGGTCCATAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTTCCCAGAATTCAGATGGTGCACAATGGTCCATAATGAG  50

seq1  CAGCACCTGTGCTTACCTCAATTACCAGACAGCTCTGAACAGCGGCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTGTGCTTACCTCAATTACCAGACAGCTCTGAACAGCGGCACAA  100

seq1  AGGGCTTACTAGATTTTTTTCAATAATAGATTTAGTTATGTCTTTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTACTAGATTTTTTTCAATAATAGATTTAGTTATGTCTTTCATAA  150

seq1  TTGGATTCAAAAGCTCAAAATTTCATTTTCCAACTTGTTCATAAAATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTCAAAAGCTCAAAATTTCATTTTCCAACTTGTTCATAAAATTTG  200

seq1  TATGAAAAAGTCTGGCATTTACTCAAAAGAAATAGTCTGTGAAGAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAAGTCTGGCATTTACTCAAAAGAAATAGTCTGTGAAGAAAAAA  250

seq1  AAAAAAAACCCTGCAAAACAGCCAACCATTGGTAACTAAGCAGCCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCTGCAAAACAGCCAACCATTGGTAACTAAGCAGCCAAATT  300

seq1  ATAGTCCAAGCACTTGGCAAATACACCGTCTTTTTATTATTTCAGTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCAAGCACTTGGCAAATACACCGTCTTTTTATTATTTCAGTAATT  350

seq1  GAATTTCTGTTAAAGCACGGAGCATAATTTAACATGAGGAATTTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTGTTAAAGCACGGAGCATAATTTAACATGAGGAATTTATTTAT  400

seq1  AATACAATAGCGTTTCAGTAATAAATGCATTATTATTGTCACTTTTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATAGCGTTTCAGTAATAAATGCATTATTATTGTCACTTTTAATG  450

seq1  GAGTCTTATGTATTCCCTCTGAGACTGTGAGGCAGACTTAGAGACAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTATGTATTCCCTCTGAGACTGTGAGGCAGACTTAGAGACAGCCA  500

seq1  CTGCACCAGTGCTGTTTGTAGACAATTGAATTAATTGGAGACAGGGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAGTGCTGTTTGTAGACAATTGAATTAATTGGAGACAGGGTCAT  550

seq1  TAACTCGACCTGAATACCTCTGATTGCTTCTGTAAATAAGGTTAGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCGACCTGAATACCTCTGATTGCTTCTGTAAATAAGGTTAGAGAGC  600

seq1  AAATGGCTAATCTTCGTTGTCATTATAGATTCCTCTTACATTTTCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTAATCTTCGTTGTCATTATAGATTCCTCTTACATTTTCACACT  650

seq1  GCCATGTATATTAAAATCATTTTGCTAAGCAGCTTTTCAGACTCTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTATATTAAAATCATTTTGCTAAGCAGCTTTTCAGACTCTCTGTA  700

seq1  TATTTACAGTATCATCTTGCATGGCACATAACCATAATTGTATCAGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAGTATCATCTTGCATGGCACATAACCATAATTGTATCAGACTT  750

seq1  ATATTACATTCCCCATATCTTTATAAAACATGATACTAGAAAAGAATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACATTCCCCATATCTTTATAAAACATGATACTAGAAAAGAATCTA  800

seq1  TGTTGAATCACATCTCATAAAAACCATCCGACCAACAAATGAATAAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATCACATCTCATAAAAACCATCCGACCAACAAATGAATAAACCA  850

seq1  CAGTATATAAAACATCATATTAAAGGAAAGTAAAATCACAAAGCAAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATATAAAACATCATATTAAAGGAAAGTAAAATCACAAAGCAAAAGT  900

seq1  TGCCTTGTTTTCCTGTTGCAGATACATTTTTAGATACACAATTAATGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTTTTCCTGTTGCAGATACATTTTTAGATACACAATTAATGCAT  950

seq1  AATGAGTTCTCAAAGATGCAATCTCTAAAGAAATAGCATAGGCAGAGAAG  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATGAGTTCTCAAAGATGCAATCTCT-AAGAAATAGCATAGGCAGAGAAG  999

seq1  CATTGGTTAAAAACCTCCTTGGGCTTCATTTGGAGCTCTTGAAGTCATGC  1050
      |||||||| ||||||||| |||||||||||| |||||| || ||||||||
seq2  CATTGGTT-AAAACCTCC-TGGGCTTCATTT-GAGCTC-TGGAGTCATGC  1045

seq1  CCTTTTTTGCCCTTCTGTAACAACATTAATAACATGCAAATTAATAACAT  1100
      ||  |||||||| ||||| |||||| |||| ||||||||  |||||||||
seq2  CC--TTTTGCCC-TCTGT-ACAACA-TAAT-ACATGCAA--TAATAACAT  1087

seq1  GCAACATTGGAGTCTTTCTTTCTGTTCATTCTAAAAAGGAGTTAACTAAA  1150
      |||||||||||||| ||||||||||||||||| |||||||  ||||||| 
seq2  GCAACATTGGAGTC-TTCTTTCTGTTCATTCT-AAAAGGA--TAACTAA-  1132

seq1  TATCATTTTAAACATAGATATTAAAAGATTTTAAATCTTTTATTTCTGGA  1200
        ||||||  |||| ||| |||||||||||   |||||||   |||||||
seq2  -TTCATTT--AACA-AGA-ATTAAAAGATT---AATCTTT--ATTCTGGA  1172

seq1  ATTATTTTTCATACCACTATCTTGTTG  1227
      ||  |||||| || |||| ||||||||
seq2  AT--TTTTTC-TATCACT-TCTTGTTG  1195

seq1: chr10_104054096_104054281
seq2: B6Ng01-109H08.g_149_334 (reverse)

seq1  GTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGT  50
      ||||||||||||||||||||| |||||||||||| ||||||||||||| |
seq2  GTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGAT  50

seq1  TGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCC  100
      ||||| ||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TGTACCAGCTTGCAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTCC  100

seq1  ACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTC  150
      |||||||||||||||||| ||||||||||||||| |||||||||||||| 
seq2  ACATCCTCGCCAGCATCTACTGTCACCTGAATTTCTGATCTTAGCCATTT  150

seq1  TGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGA  186
      | |||||||||||||||  |||||||||||||||||
seq2  TTACTGGTGTGAGGTGGGGTCTCAGGGTTGTTTTGA  186