BAC Information

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BAC

Clone NameB6Ng01-110P07
Chromosome10 (Build37)
Map Location 61,900,909 - 62,053,055
singlet/doubletdoublet
Overlap geneSupv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21
Upstream geneEif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1
Downstream geneDdx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P07.bB6Ng01-110P07.g
ACCDH917431DH917432
length1,163965
definitionDH917431|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P07, 5' end.DH917432|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,900,909 - 61,902,080)(62,052,085 - 62,053,055)
sequence
gaattcctattcttggaccccatcctacaaaacaattaaaaataaaccaa
aagtgaaaagctacatccaccaataattctactactgcgctgttggtaac
tgggagaatgtttcagcccatgaaacaagctgctgtagtgcttttcagtg
gacaatacccacaaggactcgtctacagaatggacaattcctatgaaaca
acaaaactgcaaaggagaaaaacacagagttctaagtccttcaaacacca
catgcacaaaaaagctgccatgaaccacatgagacgctagcagtgactgt
aactatggctagacaccttctttccattttccttttgaggcagaatctta
aggtagcctaggttggctctgaactagctgtggagtccatgctaatcctc
ccacctcctgatggccctgcttcctcctccccagcgctgagacaacactt
ggaatagtcactccaccataccctgcttataggattctgggaatcagacc
cagagcgtcatgcatggactgctggaaagtgctctaccaatgagtatgtc
cccagccccaaacttttatttttacttatttattttttggtgctaaggat
taagccagggccctcccatgataggagagtaccattggttacatcatcag
agattcaaatatttctactttaggcatttggttatgttaactttataaca
cacaaatggagaactcttcgttattaaaacaacataagcttatacttgtg
acttttcagtgaacttccctggagaagagaggcagcagctgactgaagca
gtagactactcacctagcagtgctctggtccaagcccatcctctggctgg
gtctcgaatcatctggatttcatctatcactgccacttcatcttagaaca
aaaagagtgtccatgagcaaagtctcttttaaactcgaacagaaactccc
gtctccagcatcactaccaggtcttcctagtggtgtcttttctacaggct
gctctaagcgtttgttctaagtagtgaccataaggtacatggtagaggta
ttggggctggagtttattgacaggaaagtaatgaggccagaacaggtagg
atgactcaaatccagcctcctagctctttcaaccccaactccaactctga
gacaggtctcctc
gaattcatttcacccaaagcgggcctgtacagtagttattgcaggttgta
ttttaagtggatgaaggggcatagcatgcacaggcctttcttgtctgtta
tttggtttcctgcgggggtgtgggaaatagtgtttcctgattacattaga
atgcaatgaaaccagatgctctttggaaaaaggataagcctggaggaggt
agaccatgctgctcctgacttgggtttatttagtttccttttttccctct
aagccatggtggcagcagacagccctgtaaggtctgcgtttacttcctgt
accaagcattagatgtaagagttgagaagggagctgcaatgtccatctag
gctttagtaagtgttcctttctctcttcagcacctggcgattaagtgtca
ctggacagaaagggcagcggtgattggggatgtgatccgagtgtacagtg
gtcatcaagggcgcacgatcatcttctgtgaaaccaagaaggatgcccag
gagctatctcagaacacgtgcataaagcaggttggtccttttcatacctg
aagcctgggtcttcagtgagtttttatcttggactctgctttcattctgg
atttcaattatccagtgacttccatgttgtgttagattaggggaagtgtc
tctgatggtcagggtttatgaaatctaccagtcctgcctcatgggtggtg
gttcactggtaaagctacacctacaaagtaggtatagtctcctttgggtg
atattctcaaccttggagagtgtagttagaaagagttgatgtgggctggg
gagatgacccagcagttaagagtactgactgcagaggttctgagtcaaat
cccaacaaccacatggtggctcacaccatctgtaatgggatcgattgccc
acttctgttgtgtctgaagacagctacaaagtactcaataattaaattaa
tcttaaaaaagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61900909_61902080
seq2: B6Ng01-110P07.b_46_1208

seq1  GAATTCCTATTCTTGGACCCCATCCTACAAAACAATTAAAAATAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCTTGGACCCCATCCTACAAAACAATTAAAAATAAACCAA  50

seq1  AAGTGAAAAGCTACATCCACCAATAATTCTACTACTGCGCTGTTGGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAAGCTACATCCACCAATAATTCTACTACTGCGCTGTTGGTAAC  100

seq1  TGGGAGAATGTTTCAGCCCATGAAACAAGCTGCTGTAGTGCTTTTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAATGTTTCAGCCCATGAAACAAGCTGCTGTAGTGCTTTTCAGTG  150

seq1  GACAATACCCACAAGGACTCGTCTACAGAATGGACAATTCCTATGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATACCCACAAGGACTCGTCTACAGAATGGACAATTCCTATGAAACA  200

seq1  ACAAAACTGCAAAGGAGAAAAACACAGAGTTCTAAGTCCTTCAAACACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGCAAAGGAGAAAAACACAGAGTTCTAAGTCCTTCAAACACCA  250

seq1  CATGCACAAAAAAGCTGCCATGAACCACATGAGACGCTAGCAGTGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAAAAAAGCTGCCATGAACCACATGAGACGCTAGCAGTGACTGT  300

seq1  AACTATGGCTAGACACCTTCTTTCCATTTTCCTTTTGAGGCAGAATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGCTAGACACCTTCTTTCCATTTTCCTTTTGAGGCAGAATCTTA  350

seq1  AGGTAGCCTAGGTTGGCTCTGAACTAGCTGTGGAGTCCATGCTAATCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCTAGGTTGGCTCTGAACTAGCTGTGGAGTCCATGCTAATCCTC  400

seq1  CCACCTCCTGATGGCCCTGCTTCCTCCTCCCCAGCGCTGAGACAACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCTGATGGCCCTGCTTCCTCCTCCCCAGCGCTGAGACAACACTT  450

seq1  GGAATAGTCACTCCACCATACCCTGCTTATAGGATTCTGGGAATCAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTCACTCCACCATACCCTGCTTATAGGATTCTGGGAATCAGACC  500

seq1  CAGAGCGTCATGCATGGACTGCTGGAAAGTGCTCTACCAATGAGTATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCGTCATGCATGGACTGCTGGAAAGTGCTCTACCAATGAGTATGTC  550

seq1  CCCAGCCCCAAACTTTTATTTTTACTTATTTATTTTTTGGTGCTAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCAAACTTTTATTTTTACTTATTTATTTTTTGGTGCTAAGGAT  600

seq1  TAAGCCAGGGCCCTCCCATGATAGGAGAGTACCATTGGTTACATCATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGGGCCCTCCCATGATAGGAGAGTACCATTGGTTACATCATCAG  650

seq1  AGATTCAAATATTTCTACTTTAGGCATTTGGTTATGTTAACTTTATAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAATATTTCTACTTTAGGCATTTGGTTATGTTAACTTTATAACA  700

seq1  CACAAATGGAGAACTCTTCGTTATTAAAACAACATAAGCTTATACTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGGAGAACTCTTCGTTATTAAAACAACATAAGCTTATACTTGTG  750

seq1  ACTTTTCAGTGAACTTCCCTGGAGAAGAGAGGCAGCAGCTGACTGAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAGTGAACTTCCCTGGAGAAGAGAGGCAGCAGCTGACTGAAGCA  800

seq1  GTAGACTACTCACCTAGCAGTGCTCTGGTCCAAGCCCATCCTCTGGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTACTCACCTAGCAGTGCTCTGGTCCAAGCCCATCCTCTGGCTGG  850

seq1  GTCTCGAATCATCTGGATTTCATCTATCACTGCCACTTCATCTTAGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAATCATCTGGATTTCATCTATCACTGCCACTTCATCTTAGAACA  900

seq1  AAAAGAGTGTCCATGAGCAAAAGTCTCTTTTAAACTCGAACAGAAACTCC  950
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  AAAAGAGTGTCCATGAGC-AAAGTCTCTTTTAAACTCGAACAGAAACT-C  948

seq1  CCGTCTCCAGCATCACTACCAGGTCTTCCTAGGTGTGTCTTTTCTAACAG  1000
      ||||||||||||||||||||||||||||||||  ||||||||||| ||||
seq2  CCGTCTCCAGCATCACTACCAGGTCTTCCTAGTGGTGTCTTTTCT-ACAG  997

seq1  GCTTGCTCTAAGGCGTTTGTTCTAAGTAGTGACCATAAGGTAACATGGTT  1050
      || |||||||| ||||||||||||||||||||||||||||| |||||| |
seq2  GC-TGCTCTAA-GCGTTTGTTCTAAGTAGTGACCATAAGGT-ACATGG-T  1043

seq1  AGAGGTATTGGGGCT-GAGTTTATTGACAGGAAAGTAAAATGAGGCCCAG  1099
      ||||||||||||||| ||||||||||||||||||||  |||||||||   
seq2  AGAGGTATTGGGGCTGGAGTTTATTGACAGGAAAGT--AATGAGGCCAGA  1091

seq1  ACAAGTAGGGATGAACTCAAATCCCAGCCTCCTAGCTC--TCAACACCAC  1147
      ||| ||| ||||| |||||||| |||||||||||||||  ||||| ||| 
seq2  ACAGGTA-GGATG-ACTCAAAT-CCAGCCTCCTAGCTCTTTCAACCCCA-  1137

seq1  ACTCCACACTCTGAG-CA-GTCTCCTC  1172
      |||||| |||||||| || ||||||||
seq2  ACTCCA-ACTCTGAGACAGGTCTCCTC  1163

seq1: chr10_62052085_62053055
seq2: B6Ng01-110P07.g_68_1032 (reverse)

seq1  GTTTCTTTTTTTAAAGATTTATTTTATTTATATGAGTACTTTGTAGCTGT  50
      |||||||||||  |||| ||| |||| |||| ||||||||||||||||||
seq2  GTTTCTTTTTT--AAGA-TTAATTTAATTAT-TGAGTACTTTGTAGCTGT  46

seq1  CTTCAGACACACCAGAAGTGGGCATTCGATCCCATTACAGATGGTTGTGA  100
      ||||||||||| |||||||||||| ||||||||||||||||||| |||||
seq2  CTTCAGACACAACAGAAGTGGGCAATCGATCCCATTACAGATGG-TGTGA  95

seq1  GCCACCATGTGGTTGTTGGGATTTGAACTCAGAACCTCTGCAGTCAGTAC  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCACCATGTGGTTGTTGGGATTTG-ACTCAGAACCTCTGCAGTCAGTAC  144

seq1  TCTTAACTGCTGGGTCATCTCCCCAGCCCACATCAACTCTTTCTAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGCTGGGTCATCTCCCCAGCCCACATCAACTCTTTCTAACTAC  194

seq1  ACTCTCCAAGGTTGAGAATATCACCCAAAGGAGACTATACCTACTTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCAAGGTTGAGAATATCACCCAAAGGAGACTATACCTACTTTGTA  244

seq1  GGTGTAGCTTTACCAGTGAACCACCACCCATGAGGCAGGACTGGTAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGCTTTACCAGTGAACCACCACCCATGAGGCAGGACTGGTAGATT  294

seq1  TCATAAACCCTGACCATCAGAGACACTTCCCCTAATCTAACACAACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACCCTGACCATCAGAGACACTTCCCCTAATCTAACACAACATGG  344

seq1  AAGTCACTGGATAATTGAAATCCAGAATGAAAGCAGAGTCCAAGATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTGGATAATTGAAATCCAGAATGAAAGCAGAGTCCAAGATAAAA  394

seq1  ACTCACTGAAGACCCAGGCTTCAGGTATGAAAAGGACCAACCTGCTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGAAGACCCAGGCTTCAGGTATGAAAAGGACCAACCTGCTTTAT  444

seq1  GCACGTGTTCTGAGATAGCTCCTGGGCATCCTTCTTGGTTTCACAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGTTCTGAGATAGCTCCTGGGCATCCTTCTTGGTTTCACAGAAGA  494

seq1  TGATCGTGCGCCCTTGATGACCACTGTACACTCGGATCACATCCCCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGTGCGCCCTTGATGACCACTGTACACTCGGATCACATCCCCAATC  544

seq1  ACCGCTGCCCTTTCTGTCCAGTGACACTTAATCGCCAGGTGCTGAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGCCCTTTCTGTCCAGTGACACTTAATCGCCAGGTGCTGAAGAGA  594

seq1  GAAAGGAACACTTACTAAAGCCTAGATGGACATTGCAGCTCCCTTCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAACACTTACTAAAGCCTAGATGGACATTGCAGCTCCCTTCTCAA  644

seq1  CTCTTACATCTAATGCTTGGTACAGGAAGTAAACGCAGACCTTACAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACATCTAATGCTTGGTACAGGAAGTAAACGCAGACCTTACAGGGC  694

seq1  TGTCTGCTGCCACCATGGCTTAGAGGGAAAAAAGGAAACTAAATAAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGCCACCATGGCTTAGAGGGAAAAAAGGAAACTAAATAAACCC  744

seq1  AAGTCAGGAGCAGCATGGTCTACCTCCTCCAGGCTTATCCTTTTTCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGAGCAGCATGGTCTACCTCCTCCAGGCTTATCCTTTTTCCAAA  794

seq1  GAGCATCTGGTTTCATTGCATTCTAATGTAATCAGGAAACACTATTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTGGTTTCATTGCATTCTAATGTAATCAGGAAACACTATTTCCC  844

seq1  ACACCCCCGCAGGAAACCAAATAACAGACAAGAAAGGCCTGTGCATGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCGCAGGAAACCAAATAACAGACAAGAAAGGCCTGTGCATGCTA  894

seq1  TGCCCCTTCATCCACTTAAAATACAACCTGCAATAACTACTGTACAGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTCATCCACTTAAAATACAACCTGCAATAACTACTGTACAGGCC  944

seq1  CGCTTTGGGTGAAATGAATTC  971
      |||||||||||||||||||||
seq2  CGCTTTGGGTGAAATGAATTC  965