BAC Information

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BAC

Clone NameB6Ng01-111G24
Chromosome10 (Build37)
Map Location 85,735,618 - 85,869,838
singlet/doubletdoublet
Overlap geneSyn3, Timp3
Upstream geneEG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7
Downstream geneEG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111G24.bB6Ng01-111G24.g
ACCDH917782DH917783
length4661,052
definitionDH917782|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G24, 5' end.DH917783|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,869,367 - 85,869,838)(85,735,618 - 85,736,688)
sequence
tttggaagtcagaaatgacaagtatgtatgcacaggagagataagactca
cacaaatgctgtcctgtatgattagactctggggaaaaagatttgcaggc
taatgtgtgaaggtctatatgaccacgagatggctcagacctggacaagt
aggaaaagcagaagatcctgtgaaaaagatagatagatagatagatagat
agatagatagatagatagatagatagccggccagccatgtcaaatggtag
gatgtgggtattgagctggggagagggtatgagagttctgcaagttaaaa
atggcctctgcaggtagacataggaaagcagtggcatatggttgggggat
atggagtgatcaaataatgcaataacctactgcgtgctttcttagtgcag
ggaagacattgtgtggcttcctatttccaataataggccagatcgcatgt
ggcgccactaaagcct
gaattctgcttctctgtaacaggtcctctgacgagaactggacacgtaca
gttaatagctcttggacatccctcttatttcttcctttgcaaagaagcaa
agaaatctctgaggaaaccagcttgggtggggtcagagggcagctcccaa
tagccaaatgctacaggtttcttaagaactggataggaaaatggcaaaag
gtagcctagtggcctaaaataaatctggctctaagtcaagaggatgagct
tgcatccgggcttagggtctaaattgatatccactgaaatactcccaaga
gggacagtcaccatacagctctacatcctggtgttgctactatggaattg
ctgtcttcatctgtaaaactcagagatccatgaggatctgaatagagatg
ctcaggtgctgtgcaaatggtggggtcagaaagcaatgggagacattttc
ctgtgtgccttagccttactttttcacctctccttcctcatagtctttcc
cctttcttgaaaatctcaggaagatcttgagctcacatctaatgctgtaa
acaccatgcccttactcggtaagcaggaagttggtctccaccccgaccct
cttttgtccttccttcagggaccccgctcccctgctatttagtttcctgc
ttcctggtaacttgtcctgaattagttattttattctgtgcttaagaagt
cacatgagctagggtgtgagtgtgcgttgtgagtgcatgagggctgtgtg
agccagagggcaggaataaacacatggagccaaggggaaaggcaggggta
agggtcactcagaacaagccagtccaagaaattaaattagccttggaacg
agaaatgtggggttcctcaaggaacagcagctgtgaaaagaaagacgagg
aggaaaatattacctgcacacagcggctgcaaactcgctgccaccacatc
tgcctgggtctccccagcttggtcccccgccccacaggctatctctgcag
tctgtgaagtcgagcagtgaaatttcttcaaatgcgtccatttcctcctc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_85869367_85869838
seq2: B6Ng01-111G24.b_48_519 (reverse)

seq1  AGGCTTTAGTGGTGGCACATACGATCTGGCCTATTATTGGAAATAGGAAG  50
      |||||||||||| | ||||| |||||||||||||||||||||||||||||
seq2  AGGCTTTAGTGGCGCCACATGCGATCTGGCCTATTATTGGAAATAGGAAG  50

seq1  CCACACAATGTCTTCCCTGCACTAAGAAAGCACGCAGTAGGTTATTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAATGTCTTCCCTGCACTAAGAAAGCACGCAGTAGGTTATTGCAT  100

seq1  TATTTGATCACTCCATATCCCCCAACCATATGCCACTGCTTTCCTATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATCACTCCATATCCCCCAACCATATGCCACTGCTTTCCTATGTC  150

seq1  TACCTGCAGAGGCCATTTTTAACTTGCAGAACTCTCATACCCTCTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCAGAGGCCATTTTTAACTTGCAGAACTCTCATACCCTCTCCCCA  200

seq1  GCTCAATACCCACATCCTACCATTTGACATGGCTGGCCGGCTATCTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATACCCACATCCTACCATTTGACATGGCTGGCCGGCTATCTATCT  250

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTTTTCACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTTTTCACAGG  300

seq1  ATCTTCTGCTTTTCCTACTTGTCCAGGTCTGAGCCATCTCGTGGTCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGCTTTTCCTACTTGTCCAGGTCTGAGCCATCTCGTGGTCATAT  350

seq1  AGACCTTCACACATTAGCCTGCAAATCTTTTTCCCCAGAGTCTAATCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCACACATTAGCCTGCAAATCTTTTTCCCCAGAGTCTAATCATA  400

seq1  CAGGACAGCATTTGTGTGAGTCTTATCTCTCCTGTGCATACATACTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCATTTGTGTGAGTCTTATCTCTCCTGTGCATACATACTTGTC  450

seq1  ATTTCTGACTTCCAAAGAATTC  472
      ||||||||||||||||||||||
seq2  ATTTCTGACTTCCAAAGAATTC  472

seq1: chr10_85735618_85736688
seq2: B6Ng01-111G24.g_68_1119

seq1  GAATTCTGCTTCTCTGTAACAGGTCCTCTGACGAGAACTGGACACGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCTCTGTAACAGGTCCTCTGACGAGAACTGGACACGTACA  50

seq1  GTTAATAGCTCTTGGACATCCCTCTTATTTCTTCCTTTGCAAAGAAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGCTCTTGGACATCCCTCTTATTTCTTCCTTTGCAAAGAAGCAA  100

seq1  AGAAATCTCTGAGGAAACCAGCTTGGGTGGGGTCAGAGGGCAGCTCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTCTGAGGAAACCAGCTTGGGTGGGGTCAGAGGGCAGCTCCCAA  150

seq1  TAGCCAAATGCTACAGGTTTCTTAAGAACTGGATAGGAAAATGGCAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAATGCTACAGGTTTCTTAAGAACTGGATAGGAAAATGGCAAAAG  200

seq1  GTAGCCTAGTGGCCTAAAATAAATCTGGCTCTAAGTCAAGAGGATGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTAGTGGCCTAAAATAAATCTGGCTCTAAGTCAAGAGGATGAGCT  250

seq1  TGCATCCGGGCTTAGGGTCTAAATTGATATCCACTGAAATACTCCCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCGGGCTTAGGGTCTAAATTGATATCCACTGAAATACTCCCAAGA  300

seq1  GGGACAGTCACCATACAGCTCTACATCCTGGTGTTGCTACTATGGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTCACCATACAGCTCTACATCCTGGTGTTGCTACTATGGAATTG  350

seq1  CTGTCTTCATCTGTAAAACTCAGAGATCCATGAGGATCTGAATAGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCATCTGTAAAACTCAGAGATCCATGAGGATCTGAATAGAGATG  400

seq1  CTCAGGTGCTGTGCAAATGGTGGGGTCAGAAAGCAATGGGAGACATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGCTGTGCAAATGGTGGGGTCAGAAAGCAATGGGAGACATTTTC  450

seq1  CTGTGTGCCTTAGCCTTACTTTTTCACCTCTCCTTCCTCATAGTCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCCTTAGCCTTACTTTTTCACCTCTCCTTCCTCATAGTCTTTCC  500

seq1  CCTTTCTTGAAAATCTCAGGAAGATCTTGAGCTCACATCTAATGCTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTGAAAATCTCAGGAAGATCTTGAGCTCACATCTAATGCTGTAA  550

seq1  ACACCATGCCCTTACTCGGTAAGCAGGAAGTTGGTCTCCACCCCGACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGCCCTTACTCGGTAAGCAGGAAGTTGGTCTCCACCCCGACCCT  600

seq1  CTTTTGTCCTTCCTTCAGGGACCCCGCTCCCCCTGCTATTTAGTTTCCTG  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTTGTCCTTCCTTCAGGGACCCCGCT-CCCCTGCTATTTAGTTTCCTG  649

seq1  CTTCCTGGTAACTTGTCCTGAATTAGTTATTTTATTCTGTGCTTAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGTAACTTGTCCTGAATTAGTTATTTTATTCTGTGCTTAAGAAG  699

seq1  TCACATGAGCTAGGGTGTGAGTGTGCGTTGTGAGTGCATGAGGGCTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAGCTAGGGTGTGAGTGTGCGTTGTGAGTGCATGAGGGCTGTGT  749

seq1  GAGCCAGAGGGCAGGAATAAACACATGGAGCCAAGGGGAAAGGCAGGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGGGCAGGAATAAACACATGGAGCCAAGGGGAAAGGCAGGGGT  799

seq1  AAGGGTCACTCAGAACAAGCCAGTCCCAAGAAATTAAAATTAGCCCTGGG  850
      |||||||||||||||||||||||| |||||||||| ||||||| ||| ||
seq2  AAGGGTCACTCAGAACAAGCCAGT-CCAAGAAATT-AAATTAG-CCTTGG  846

seq1  AACGAG-AATGTTGGGGTCTCCAAGGAACAGCAGCTGTGAAAAGAAAGAC  899
      |||||| ||||| ||| ||  |||||||||||||||||||||||||||||
seq2  AACGAGAAATGTGGGGTTCCTCAAGGAACAGCAGCTGTGAAAAGAAAGAC  896

seq1  GAGGAGGGAAAATACACCCTGCACCACAGCCGCTGCAAACCTCGCTGGCC  949
      ||||| ||||||||   |||||| |||||| |||||||| |||||||  |
seq2  GAGGA-GGAAAATATTACCTGCA-CACAGCGGCTGCAAA-CTCGCTG--C  941

seq1  CACCACATCTGCCCTGGGGTCTCCCCCAGCTTTGGTCCCCCGCCCCCACC  999
      |||||||||||||   |||||| ||||||| |||||||||||||||   |
seq2  CACCACATCTGCC--TGGGTCT-CCCCAGC-TTGGTCCCCCGCCCC--AC  985

seq1  AGGCTATCTCTGGCCAAGTCTGTGAGGTCGAGCAGTGAGAATTTCCTTCA  1049
      ||||||||||||    ||||||||| |||||||||||| ||||| |||||
seq2  AGGCTATCTCTG---CAGTCTGTGAAGTCGAGCAGTGA-AATTT-CTTCA  1030

seq1  CATGCTGTCATTTTCCT-CTCTG  1071
       |||| |||  |||||| |||||
seq2  AATGC-GTCCATTTCCTCCTCTG  1052