BAC Information

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BAC

Clone NameB6Ng01-111J04
Chromosome12 (Build37)10 (Build37)
Map Location 32,631,616 - 32,631,84363,414,398 - 63,414,742
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111J04.bB6Ng01-111J04.g
ACCDH917882DH917883
length736345
definitionDH917882|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J04, 5' end.DH917883|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,843)(63,414,398 - 63,414,742)
sequence
gaattctgtccttgtggctgtcttcttttaggttacttgaaggattactt
tcttgttttttctaggacgtggtttccctgcatccatgggatgaaacttt
cttggtcaggatggatgattgttttgatgtgttcttggattcggttagcg
agaattttattgagtatttttgcattgatattcatcagggaaatttgcaa
aacacataaaactcaagaagaacgatgaccaaagtgtggacactttgccc
cttcttagaattgggaacaaaacacccatggaaggagttacagagacaca
gtttggagctgagacagaaggatggaccatctagagactgccatatccgg
ggatccatcccataatcagcttccaaaagctgacaacattgcatacacta
gcaacattttgctaaaaggacccagacatagctgtctcttgtgagactat
gccagggcctggcaaacacagaagaggatgctcacagtcagctattggat
cgatcacagggcccccaatggaggagctagagaaagttcccaaggagcta
aagggatctgcaaccctataggtggaacaacattatgaactaaccagtac
tccccagagctcgtgtctctagctgcatatttatcagaagatggcctagt
cggccatcagtggaaagagaggcccattggttgtgcaaactttatctgcc
tcagtacaggggaacgccagggccaagaagtgggag
agtggcctgcagaagccagaagaaggtatcaaaatctctgaagtagaatt
acagttgtgagctgtcccgcacggttactaaaaaacaaacttgagccctc
tgcaagagcaggacacactcttaagtgctgagccatcttctccagaccca
agaaatgcatttaagaatccatttaagccacacatttaagaatcaagcta
cttaagaacattgtcagtattggatgcattaattctaaaaatatgcggct
cacaacctccttcattaggtgcttaggagtacattcagctcctgaagtgg
ctacttgagctgggagagagaggggggagaagggatagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-111J04.b_499_773 (reverse)

seq1  CTCCCACTTCTTGGCCCTGGC-----------------------AAG---  24
      |||||||||||||||||||||                       |||   
seq2  CTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCAGATAAAGTTT  50

seq1  -----ACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
           ||| |||||||||||||||||||||                ||||
seq2  GCACAACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGG-GTACTGGTCAGTTC  102
      ||||| ||| |||||||||||||||||||| |||| |||||||| |||||
seq2  TGATAAATATGCAGCTAGAGACACGAGCTCTGGGGAGTACTGGTTAGTTC  150

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTA  152
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  ATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGAA  200

seq1  CTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGA  202
      ||||||||| |||||||||||||| ||||||||| | |||||||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGAT-CGATCCAATAGCTGA  249

seq1  CTGTGAGCATCCACTTCTGTGTTTGC  228
      |||||||||||| |||||||||||||
seq2  CTGTGAGCATCCTCTTCTGTGTTTGC  275

seq1: chr10_63414398_63414742
seq2: B6Ng01-111J04.g_75_419 (reverse)

seq1  TCTCTCTCTATCCCTTCTCCCCCCTCTCTCTCCCAGCTCAAGTAGCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTATCCCTTCTCCCCCCTCTCTCTCCCAGCTCAAGTAGCCACT  50

seq1  TCAGGAGCTGAATGTACTCCTAAGCACCTAATGAAGGAGGTTGTGAGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCTGAATGTACTCCTAAGCACCTAATGAAGGAGGTTGTGAGCCG  100

seq1  CATATTTTTAGAATTAATGCATCCAATACTGACAATGTTCTTAAGTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTAGAATTAATGCATCCAATACTGACAATGTTCTTAAGTAGCT  150

seq1  TGATTCTTAAATGTGTGGCTTAAATGGATTCTTAAATGCATTTCTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTAAATGTGTGGCTTAAATGGATTCTTAAATGCATTTCTTGGGT  200

seq1  CTGGAGAAGATGGCTCAGCACTTAAGAGTGTGTCCTGCTCTTGCAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAGATGGCTCAGCACTTAAGAGTGTGTCCTGCTCTTGCAGAGGG  250

seq1  CTCAAGTTTGTTTTTTAGTAACCGTGCGGGACAGCTCACAACTGTAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTTGTTTTTTAGTAACCGTGCGGGACAGCTCACAACTGTAATTC  300

seq1  TACTTCAGAGATTTTGATACCTTCTTCTGGCTTCTGCAGGCCACT  345
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGAGATTTTGATACCTTCTTCTGGCTTCTGCAGGCCACT  345