BAC Information

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BAC

Clone NameB6Ng01-111L06
Chromosome10 (Build37)
Map Location 36,023,312 - 36,192,817
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041585, LOC667860
Downstream geneHs3st5, Hdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111L06.bB6Ng01-111L06.g
ACCDH917978DH917979
length1,171487
definitionDH917978|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L06, 5' end.DH917979|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,023,312 - 36,024,496)(36,192,325 - 36,192,817)
sequence
gaattcatcattagatttttcagttaataattcactcgttcttccttctg
tataattgctacactggagacgaagtcttcagaacattttgtagacattc
caggtccagactagaatattctgccctagcacaaaaagcttcctgttcat
ctaacaatacaacgttcacttaatccttcttgaatttttcccaaatccta
gcagctctaatatttttttagagtcccaacatacactagccataaaagac
taacatcccagttctgaaagacgagaaaggtaaagtaccaagaaggaaat
gaaacaaagcccaagtaaagagcaggttccatgtcagcatttggagcaag
tagtgtcaggacataagtcattgtctcacactatatccttgctgggtgca
gtctcttcttaccactggtgactttcctggaaagagatttcttggctcat
ctaacttcctgaggtccccactgggtgttctgtttcatcctcatagcttt
attccatgccaccttagggggtcccttgcacatggaatccagcttctttg
ggaatcttggcaagactctctatgatctcaattcaaagtatttgacttct
aaacagtggtaataaagtcttcatcagccgcagccttcatggccaaaagg
gttaagtcacactatgcattgtaaacatttgtgatcttcattttatgctt
tagtttcactgaaaatttaggtaaacacaacagcaatcacatccccatac
taggtctacaagttgtcttttgtgtatatatttctttcacattaataaca
tgccatatcaaactttgggcttccacaacaatatttcaggggacatgcac
aatttattccaggacagttgtcacagtatgacaagaatggcctctttctg
gttccaagctttcttcactgcctttatggtaatgcactctaagagaatat
ttggtatttttctattcttgcagagtttcccattatactcttcaatacag
aatttcaagttttgtagtttggatctttaaactttcacattccttctaca
ttaatattgtctaaagccatatggacagcatctttgatttgaattgcagc
attttggcatctgtaagatttcataccaggtctggaaaatcctgaaatca
gaatacatttggttcatgttt
ctgacccctcatattgagaaaagaatgaacttgacagaaagaaggaggct
ctaaactcctctctgtatgataatgggagaaatatatggtgtgtggagag
gtggggtgcatcccacataatgaatcatatgcagaaagtacacggaggat
tcaatactgtatttctaaaacctcaatagtgcttactgtaagtgatattt
ttgtggccttttctttgcccagatatttgtcattctgtagttgatttaga
aagagattcatggaaagtcataattatttaaagaagggaacaggcagaat
gctctcttgccatgtctataaatctttccttatgtgtgctgagaactatg
ctttgcctgcctgctttgcccatgtagcaggagtatatcatgatgccagc
attgtcagacccctagagccctcttcactgaaggtctgtaacctgagagg
agtctactgctgagttctaaccacatagcacaagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_36023312_36024496
seq2: B6Ng01-111L06.b_34_1204

seq1  GAATTCATCATTAGATTTTTCAGTTAATAATTCACTCGTTCTTCCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTAGATTTTTCAGTTAATAATTCACTCGTTCTTCCTTCTG  50

seq1  TATAATTGCTACACTGGAGACGAAGTCTTCAGAACATTTTGTAGACATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGCTACACTGGAGACGAAGTCTTCAGAACATTTTGTAGACATTC  100

seq1  CAGGTCCAGACTAGAATATTCTGCCCTAGCACAAAAAGCTTCCTGTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCAGACTAGAATATTCTGCCCTAGCACAAAAAGCTTCCTGTTCAT  150

seq1  CTAACAATACAACGTTCACTTAATCCTTCTTGAATTTTTCCCAAATCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATACAACGTTCACTTAATCCTTCTTGAATTTTTCCCAAATCCTA  200

seq1  GCAGCTCTAATATTTTTTTAGAGTCCCAACATACACTAGCCATAAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTAATATTTTTTTAGAGTCCCAACATACACTAGCCATAAAAGAC  250

seq1  TAACATCCCAGTTCTGAAAGACGAGAAAGGTAAAGTACCAAGAAGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCCCAGTTCTGAAAGACGAGAAAGGTAAAGTACCAAGAAGGAAAT  300

seq1  GAAACAAAGCCCAAGTAAAGAGCAGGTTCCATGTCAGCATTTGGAGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAGCCCAAGTAAAGAGCAGGTTCCATGTCAGCATTTGGAGCAAG  350

seq1  TAGTGTCAGGACATAAGTCATTGTCTCACACTATATCCTTGCTGGGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCAGGACATAAGTCATTGTCTCACACTATATCCTTGCTGGGTGCA  400

seq1  GTCTCTTCTTACCACTGGTGACTTTCCTGGAAAGAGATTTCTTGGCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCTTACCACTGGTGACTTTCCTGGAAAGAGATTTCTTGGCTCAT  450

seq1  CTAACTTCCTGAGGTCCCCACTGGGTGTTCTGTTTCATCCTCATAGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTCCTGAGGTCCCCACTGGGTGTTCTGTTTCATCCTCATAGCTTT  500

seq1  ATTCCATGCCACCTTAGGGGGTCCCTTGCACATGGAATCCAGCTTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGCCACCTTAGGGGGTCCCTTGCACATGGAATCCAGCTTCTTTG  550

seq1  GGAATCTTGGCAAGACTCTCTATGATCTCAATTCAAAGTATTTGACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTGGCAAGACTCTCTATGATCTCAATTCAAAGTATTTGACTTCT  600

seq1  AAACAGTGGTAATAAAGTCTTCATCAGCCGCAGCCTTCATGGCC-AAAGG  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACAGTGGTAATAAAGTCTTCATCAGCCGCAGCCTTCATGGCCAAAAGG  650

seq1  GTTAAGTCACACTATGCATTGTAAACATTTGTGATCTTCATTTTATGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTCACACTATGCATTGTAAACATTTGTGATCTTCATTTTATGCTT  700

seq1  TAGTTTCACTGAAAATTTAGGTAAACACAACAGCAATCACAT-CCCATAC  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGTTTCACTGAAAATTTAGGTAAACACAACAGCAATCACATCCCCATAC  750

seq1  TAGGTCTACAAGTTGTCTTTTGTGTATATATTTCTTTCACATTAATAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTACAAGTTGTCTTTTGTGTATATATTTCTTTCACATTAATAACA  800

seq1  TGCCATATCAAAC-TTGGGCTTCCACAACAATATTTCAGGGGACATGCAC  847
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCCATATCAAACTTTGGGCTTCCACAACAATATTTCAGGGGACATGCAC  850

seq1  AATTTA-TCCAGGACAGTTGTCACAGTATGACAAGAATGGCCTC-TTCTG  895
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTTATTCCAGGACAGTTGTCACAGTATGACAAGAATGGCCTCTTTCTG  900

seq1  G-TCCAAGCTTTCTTCACTGCCTTTAT-GTTATGCACTCT-AGAGAATAT  942
      | ||||||||||||||||||||||||| || ||||||||| |||||||||
seq2  GTTCCAAGCTTTCTTCACTGCCTTTATGGTAATGCACTCTAAGAGAATAT  950

seq1  TTGGTA-TTTTCTATTCTTGCCAGAGTTTCCCATTAAACTCTAC-ATACA  990
      |||||| ||||||||||||| ||||||||||||||| ||||| | |||||
seq2  TTGGTATTTTTCTATTCTTG-CAGAGTTTCCCATTATACTCTTCAATACA  999

seq1  GAATTCCAAGTTTTTGTAGTTTGTATCTTTAAACTTTTCACAATTCCTTC  1040
      ||||| |||| |||||||||||| |||||||||| |||||| ||||||||
seq2  GAATTTCAAG-TTTTGTAGTTTGGATCTTTAAAC-TTTCAC-ATTCCTTC  1046

seq1  TACCATTAATATTGTCCTAAAGCCATATGGACAGCATCATTAGATAGAAT  1090
      || |||||||||||| |||||||||||||||||||||| ||   | ||||
seq2  TA-CATTAATATTGT-CTAAAGCCATATGGACAGCATCTTTGATTTGAAT  1094

seq1  TGCAGCAATTTTGCCAATCTGTAAAAGATTCCTATTACCAAGACTGACAA  1140
      ||||||| ||| ||  ||||||  ||||||  |  ||||| | |||    
seq2  TGCAGCATTTTGGC--ATCTGT--AAGATT--TCATACCAGGTCTG---G  1135

seq1  AATATCTTAGAAAATCAAGGGAAAATACATATTGGGTTCATGGTT  1185
      || ||| |   |||||     | |||||  ||| |||||||| ||
seq2  AAAATCCT--GAAATC-----AGAATAC--ATTTGGTTCATGTTT  1171

seq1: chr10_36192325_36192817
seq2: B6Ng01-111L06.g_68_560 (reverse)

seq1  GTACTTGTGCTATGTGGTTAGAACTCAGCAGTAGACTCCTCTCTGGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTACTTGTGCTATGTGGTTAGAACTCAGCAGTAGACTCCTCTCAGGTTAC  50

seq1  AGACCTTCAGTGAAGAGGGCTCTAGGGGTCTGACAATGCTGGCATCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCAGTGAAGAGGGCTCTAGGGGTCTGACAATGCTGGCATCATGA  100

seq1  TATACTCCTGCTACATGGGCAAAGCAGGCAGGCAAAGCATAGTTCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCCTGCTACATGGGCAAAGCAGGCAGGCAAAGCATAGTTCTCAGC  150

seq1  ACACATAAGGAAAGATTTATAGACATGGCAAGAGAGCATTCTGCCTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAGGAAAGATTTATAGACATGGCAAGAGAGCATTCTGCCTGTTC  200

seq1  CCTTCTTTAAATAATTATGACTTTCCATGAATCTCTTTCTAAATCAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTAAATAATTATGACTTTCCATGAATCTCTTTCTAAATCAACTA  250

seq1  CAGAATGACAAATATCTGGGCAAAGAAAAGGCCACAAAAATATCACTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGACAAATATCTGGGCAAAGAAAAGGCCACAAAAATATCACTTAC  300

seq1  AGTAAGCACTATTGAGGTTTTAGAAATACAGTATTGAATCCTCCGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCACTATTGAGGTTTTAGAAATACAGTATTGAATCCTCCGTGTAC  350

seq1  TTTCTGCATATGATTCATTATGTGGGATGCACCCCACCTCTCCACACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCATATGATTCATTATGTGGGATGCACCCCACCTCTCCACACACC  400

seq1  ATATATTTCTCCCATTATCATACAGAGAGGAGTTTAGAGCCTCCTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCTCCCATTATCATACAGAGAGGAGTTTAGAGCCTCCTTCTTT  450

seq1  CTGTCAAGTTCATTCTTTTCTCAATATGAGGGGTCAGGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGTTCATTCTTTTCTCAATATGAGGGGTCAGGAATTC  493