BAC Information

Click to search

BAC

Clone NameB6Ng01-111P03
Chromosome10 (Build37)16 (Build37)
Map Location 104,054,835 - 104,055,35118,635,781 - 18,636,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111P03.bB6Ng01-111P03.g
ACCDH918146DH918147
length901583
definitionDH918146|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P03, 5' end.DH918147|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,835 - 104,055,351)(18,635,781 - 18,636,363)
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagtcaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
aatcagggactagacaaggctgtccactttctctatacctattcaacata
gtacttgaagtcctagccagagcaattcgacaacaaaaggagaccaaggg
gatacaaattggaaaggaagaagtcaaaatatcactttttgcagatgata
taatagtatatataagtgaccctaaaaattccaccagagaactcctaaac
ctgataaacagcttcagtgaagtagctggatataaaattaactcaaacaa
gtcaatggcctttctctacacaaaggataaacagactgagaaagaaatta
gggaaacaacacccttcacaatagtcacaaataatataaaataccttggc
gtgactctaactgaggaagtgaaagatctatatgataagaacttcaagtc
tctgaagaaagaaattaaatatctcagaagatggaaaaatctcccatgct
catggattggcaggatcaatatagtaaaaatggctatcttgccaaaagca
atctacagattcaatgcaatccccatcaaaattccaactcaattcttcaa
cgaattagaaagggcaatctgcaaatttatctgaaataacaaaaaaccta
ggatagcaaaaactcttctcaaggacaaaagaacctctggtggaatcacc
atgccttacctaaagctgtactacagagcaattgtgataaaaactccatt
gtactggtatagcgacagacacgtagaccaatggaaaagacttgaagacc
cagaaatgaacccacacacctatggtcacttgatctttgacaagggagct
a
gaattcactctgtaaaccaggctggcctcgaactcagaaatccacctgca
tctgcctcccaagtgctgggattaaaggcatgtgccaccattgcccagct
taaaaataaattttaagagaggtttgtttagtttacaggttccaggactt
aagggcatgttgtccacaaccttgcagacctgttgacagctctgttatgg
catgtcacatgacaaaagtgtgcacacaaacatgtgtgtgtgtgtatgtg
tgtttctgtgtgtgtgtgtgcgtgcagaattgagtgaccacatcttgcat
aggaaggacaaaaagagactttagtgtagtcagactctggttccataaaa
gccctcagctgagaaatacggggcccatgaggataacagtcatctcttct
gaaaacagtgcatgcagtgagccgccaggcttgacctcgtaaagggccaa
gggcataccaccaccttccatactaccactctaggaactaagtttccttt
ctttctcccttccttcctctcttccttcttcccttccttccttccttcct
tccttccttccttccttccttcctccctccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054835_104055351
seq2: B6Ng01-111P03.b_435_948 (reverse)

seq1  TAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTCT  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCT  50

seq1  GGATCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCGCTATACAAGTA  100
      || ||||||| ||| |||||||||||||| ||||||||||||||| ||||
seq2  GGGTCTTCAAGTCTTTTCCATTGGTCTACGTGTCTGTCGCTATACCAGTA  100

seq1  CCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGTTTTAGGTCCGGGA  150
      | ||| |||||||||||||||||||||||||||||| |||||||  || |
seq2  CAATGGAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTAAGGCA  150

seq1  TGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATC  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGTGATTCCACCAGAGGTTCTTTTGTCCTTGAGAAGAGTTTTTGCTATC  200

seq1  CTAGGTTTTTTGTTATTCCAGATGAATCTGCCGATTGCCCTTTATAATTC  250
      ||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||
seq2  CTAGGTTTTTTGTTATTTCAGATAAATTTGCAGATTGCCCTTTCTAATTC  250

seq1  TTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGA  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGA  300

seq1  TTGCTTTTGGCAAGATAGCCATTTTTACTATATTGATCCTGCCGATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCTTTTGGCAAGATAGCCATTTTTACTATATTGATCCTGCCAATCCAT  350

seq1  GAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTT  400
      ||||||||||||| ||||||||||||||||   | |||||||||||||||
seq2  GAGCATGGGAGATTTTTCCATCTTCTGAGA---TATTTAATTTCTTTCTT  397

seq1  CAGAGACATGAAGTTCTTGTCATACAGATCTTTCACTTCCTTAGTTAGAG  450
      ||||||| |||||||||| ||||| |||||||||||||||| ||||||||
seq2  CAGAGACTTGAAGTTCTTATCATATAGATCTTTCACTTCCTCAGTTAGAG  447

seq1  TCACGCCAAGGAATTTTATATTATTTGTGGCTATTGAGAAGGGTGTTGTT  500
      ||||||||||| ||||||||||||||||| |||||| |||||||||||||
seq2  TCACGCCAAGGTATTTTATATTATTTGTGACTATTGTGAAGGGTGTTGTT  497

seq1  TCCCTAATTTCTTTCTC  517
      |||||||||||||||||
seq2  TCCCTAATTTCTTTCTC  514

seq1: chr16_18635781_18636363
seq2: B6Ng01-111P03.g_67_649 (reverse)

seq1  GAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  50

seq1  GGGAAGAAGGAAGAGAGGAAGGAAGGGAGAAAGAAAGGAAACTTAGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAGGAAGAGAGGAAGGAAGGGAGAAAGAAAGGAAACTTAGTTCC  100

seq1  TAGAGTGGTAGTATGGAAGGTGGTGGTATGCCCTTGGCCCTTTACGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGGTAGTATGGAAGGTGGTGGTATGCCCTTGGCCCTTTACGAGGT  150

seq1  CAAGCCTGGCGGCTCACTGCATGCACTGTTTTCAGAAGAGATGACTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGGCGGCTCACTGCATGCACTGTTTTCAGAAGAGATGACTGTTA  200

seq1  TCCTCATGGGCCCCGTATTTCTCAGCTGAGGGCTTTTATGGAACCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGGGCCCCGTATTTCTCAGCTGAGGGCTTTTATGGAACCAGAGT  250

seq1  CTGACTACACTAAAGTCTCTTTTTGTCCTTCCTATGCAAGATGTGGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTACACTAAAGTCTCTTTTTGTCCTTCCTATGCAAGATGTGGTCAC  300

seq1  TCAATTCTGCACGCACACACACACACAGAAACACACATACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTGCACGCACACACACACACAGAAACACACATACACACACACAC  350

seq1  ATGTTTGTGTGCACACTTTTGTCATGTGACATGCCATAACAGAGCTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGTGCACACTTTTGTCATGTGACATGCCATAACAGAGCTGTCA  400

seq1  ACAGGTCTGCAAGGTTGTGGACAACATGCCCTTAAGTCCTGGAACCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTGCAAGGTTGTGGACAACATGCCCTTAAGTCCTGGAACCTGTA  450

seq1  AACTAAACAAACCTCTCTTAAAATTTATTTTTAAGCTGGGCAATGGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACAAACCTCTCTTAAAATTTATTTTTAAGCTGGGCAATGGTGGC  500

seq1  ACATGCCTTTAATCCCAGCACTTGGGAGGCAGATGCAGGTGGATTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTTTAATCCCAGCACTTGGGAGGCAGATGCAGGTGGATTTCTGA  550

seq1  GTTCGAGGCCAGCCTGGTTTACAGAGTGAATTC  583
      |||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTTTACAGAGTGAATTC  583