BAC Information

Click to search

BAC

Clone NameB6Ng01-112A16
Chromosome10 (Build37)
Map Location 22,906,793 - 23,059,521
singlet/doubletdoublet
Overlap geneEya4
Upstream geneLOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112A16.bB6Ng01-112A16.g
ACCDH918218DH918219
length1,077787
definitionDH918218|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A16, 5' end.DH918219|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,058,455 - 23,059,521)(22,906,793 - 22,907,576)
sequence
gaattccatgtaaaattaagaaaaacttcaggtattgagatgattcgtac
ctcaccatcaagagttggaaattattaacacatctacgtctagaatttac
cactcagtcattggattgagatataatggaaagcaggaagtgtacatagg
gagctaaatggctgaccgtcaaggtgcaatagggatctggtgcatctgta
tacacgtggtccagtagatgtagtccctgccgccctccctttcatgtgtt
tagatctcagttttcctgtctctgatcttcagaatctggggctggagcat
ttgttcagggagtgttattttgtacatagcataatgttcagcatccttct
gatttacttagtagattccaggagaccctgtctcccacataatagcagtc
tctagatgctattgggtagacttgggtagaaaaaagaaattactcgcaga
tgagagcacacagcccacgcagctcttcatatctcttgatatggtgaaaa
gatgccagagctctacttaagaggattgttctactcccagtcaagtgtgg
aggatcctaattccttcctcctgagttaaacacaaaggcaaacaattctc
attggtctgtgttgatagatgaatttcacacagagaggatttacagataa
gcttaggcgggtttgaccatcttcagtgctgttttccttttccttatttt
gtgtgggagaggtagacttccttgggaggatattcagggagtaaatattt
atttgaactacctctgctaattctttcttgtcaccattattcttcagaca
taccttttattcagtttttgggtaatgacaatacctaattgcctgtccct
tttcgatgaagaaaagtattcagtagtaaaaaaaaaaatttactttcttt
tcctatatattgttcataagtgatgttttatccggacactaccgtcttgg
aatctaagtacttgatgaaatggaccatccatttattctgtaattgagaa
atcaaatggaaggtgggatgcacgcaaactgcacttgatttcaaaggcga
atccttgcccaagactctgggtttcat
gaattcaacacaagcctcctggttcagcttcaggggtgccaacattacag
aaatgagaaactatgcttgatctaaactcagaaatgttgcatttaaaata
aaaggatatattagttgcttgatctcatgattctactcgaaaacatatgt
caaaactcagatattttctcatatccttttatgctacaacattttcctct
gaagaaatatagattgcttgtttttctaccgtgttgtagataatttcatc
cctttattaatttatttatcaaatacctgagtatgtaggcccttggactt
tttttgtcagtaagactgacaaatatgtatgctttatgaggcttgtgttt
tagtgtggggtatggggagaaaattgggtttacttccatcacaattgcta
ctggcattggatattttttaccatgtgttaccttattattcatatatatg
aatgctggtggtgcacttcaaacctgagtgctattgaggaagccataccc
aaacacccctgggagatgtggctctggtgtttataaaactttagcgaggc
ataattaatagcagaattcagtcagatgggggaaagaggaccaggtactc
agacgagtgaaatctaacaattgacctcatggaagtccagatagaagagt
gcagagtagagggggacttagcagagcattggggggagggttaacaaaca
ggtgcaatgctgttgcttgatgagagaaataagttgtggagtccccgggc
ccagcagggtaaatatcactaacaattgacacattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_23058455_23059521
seq2: B6Ng01-112A16.b_45_1121 (reverse)

seq1  ATGAAACCCAGAGTCTTGTGCAAGGACTCTGCCTTTGAAATCATGTGCTG  50
      |||||||||||||||||| ||||||| || ||||||||||||| |||| |
seq2  ATGAAACCCAGAGTCTTGGGCAAGGATTC-GCCTTTGAAATCAAGTGCAG  49

seq1  TTTGCGCTGCATGCCACC-TCCATTTGAGTTTCTC-ATTACA-AATAAAT  97
      |||||| ||||| ||||| ||||||||| |||||| |||||| |||||||
seq2  TTTGCG-TGCATCCCACCTTCCATTTGA-TTTCTCAATTACAGAATAAAT  97

seq1  GAATGGTCCAATTCATCAAGTACTTAGATTCC-AGACGGTAGTGTCCGGA  146
      | |||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  GGATGGTCCATTTCATCAAGTACTTAGATTCCAAGACGGTAGTGTCCGGA  147

seq1  TAAAACATCACTTATG-ACAATATATA-GTAAAGAAAGT-AATTTTTTTT  193
      |||||||||||||||| |||||||||| | ||||||||| ||||||||||
seq2  TAAAACATCACTTATGAACAATATATAGGAAAAGAAAGTAAATTTTTTTT  197

seq1  TTTACTACTGAATACTTTTCTTCATCG-AAAGGGACAGGCAATTAGGTAT  242
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTACTACTGAATACTTTTCTTCATCGAAAAGGGACAGGCAATTAGGTAT  247

seq1  TGTCATTA-CCAAAAACTGAATAAAAGGTATGTCTGAAGAATAATGGTGA  291
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTACCCAAAAACTGAATAAAAGGTATGTCTGAAGAATAATGGTGA  297

seq1  CAAG-AAGAATTAGCAGAGGTAGTTCAAATAAATATTTACTCCCTGAATA  340
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAATTAGCAGAGGTAGTTCAAATAAATATTTACTCCCTGAATA  347

seq1  TCCTCCC-AGGAAGTCTACCTCTCCCACAC-AAATAAGGAAAAGGAAAAC  388
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TCCTCCCAAGGAAGTCTACCTCTCCCACACAAAATAAGGAAAAGGAAAAC  397

seq1  AGCACTGAAGATGGTC-AACCCGCCTAAGCTTATCTGTAAATCCTCTCTG  437
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCACTGAAGATGGTCAAACCCGCCTAAGCTTATCTGTAAATCCTCTCTG  447

seq1  TGTGAAATTCATCTATCAACACAGACCAATGAGAATTGTTTGCCTTTGTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTCATCTATCAACACAGACCAATGAGAATTGTTTGCCTTTGTG  497

seq1  TTTAACTCAGGAGGAAGGAATTAGGATCCTCCACACTTGACTGGGAGTAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCAGGAGGAAGGAATTAGGATCCTCCACACTTGACTGGGAGTAG  547

seq1  AACAATCCTCTTAAGTAGAGCTCTGGCATCTTTTCACCATATCAAGAGAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCTCTTAAGTAGAGCTCTGGCATCTTTTCACCATATCAAGAGAT  597

seq1  ATGAAGAGCTGCGTGGGCTGTGTGCTCTCATCTGCGAGTAATTTCTTTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGCTGCGTGGGCTGTGTGCTCTCATCTGCGAGTAATTTCTTTTT  647

seq1  TCTACCCAAGTCTACCCAATAGCATCTAGAGACTGCTATTATGTGGGAGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCAAGTCTACCCAATAGCATCTAGAGACTGCTATTATGTGGGAGA  697

seq1  CAGGGTCTCCTGGAATCTACTAAGTAAATCAGAAGGATGCTGAACATTAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCCTGGAATCTACTAAGTAAATCAGAAGGATGCTGAACATTAT  747

seq1  GCTATGTACAAAATAACACTCCCTGAACAAATGCTCCAGCCCCAGATTCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTACAAAATAACACTCCCTGAACAAATGCTCCAGCCCCAGATTCT  797

seq1  GAAGATCAGAGACAGGAAAACTGAGATCTAAACACATGAAAGGGAGGGCG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCAGAGACAGGAAAACTGAGATCTAAACACATGAAAGGGAGGGCG  847

seq1  GCAGGGACTACATCTACTGGACCACGTGTATACAGATGCACCAGATCCCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACTACATCTACTGGACCACGTGTATACAGATGCACCAGATCCCT  897

seq1  ATTGCACCTTGACGGTCAGCCATTTAGCTCCCTATGTACACTTCCTGCTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACCTTGACGGTCAGCCATTTAGCTCCCTATGTACACTTCCTGCTT  947

seq1  TCCATTATATCTCAATCCAATGACTGAGTGGTAAATTCTAGACGTAGATG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATATCTCAATCCAATGACTGAGTGGTAAATTCTAGACGTAGATG  997

seq1  TGTTAATAATTTCCAACTCTTGATGGTGAGGTACGAATCATCTCAATACC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAATTTCCAACTCTTGATGGTGAGGTACGAATCATCTCAATACC  1047

seq1  TGAAGTTTTTCTTAATTTTACATGGAATTC  1067
      ||||||||||||||||||||||||||||||
seq2  TGAAGTTTTTCTTAATTTTACATGGAATTC  1077

seq1: chr10_22906793_22907576
seq2: B6Ng01-112A16.g_68_854

seq1  GAATTCAACACAAGCCTCCTGGTTCAGCTTCAGGGGTGCCAACATTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAAGCCTCCTGGTTCAGCTTCAGGGGTGCCAACATTACAG  50

seq1  AAATGAGAAACTATGCTTGATCTAAACTCAGAAATGTTGCATTTAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAACTATGCTTGATCTAAACTCAGAAATGTTGCATTTAAAATA  100

seq1  AAAGGATATATTAGTTGCTTGATCTCATGATTCTACTCGAAAACATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATATATTAGTTGCTTGATCTCATGATTCTACTCGAAAACATATGT  150

seq1  CAAAACTCAGATATTTTCTCATATCCTTTTATGCTACAACATTTTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCAGATATTTTCTCATATCCTTTTATGCTACAACATTTTCCTCT  200

seq1  GAAGAAATATAGATTGCTTGTTTTTCTACCGTGTTGTAGATAATTTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATATAGATTGCTTGTTTTTCTACCGTGTTGTAGATAATTTCATC  250

seq1  CCTTTATTAATTTATTTATCAAATACCTGAGTATGTAGGCCCTTGGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTAATTTATTTATCAAATACCTGAGTATGTAGGCCCTTGGACTT  300

seq1  TTTTTGTCAGTAAGACTGACAAATATGTATGCTTTATGAGGCTTGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCAGTAAGACTGACAAATATGTATGCTTTATGAGGCTTGTGTTT  350

seq1  TAGTGTGGGGTATGGGGAGAAAATTGGGTTTACTTCCATCACAATTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGGGTATGGGGAGAAAATTGGGTTTACTTCCATCACAATTGCTA  400

seq1  CTGGCATTGGATATTTTTTACCATGTGTTACCTTATTATTCATATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTGGATATTTTTTACCATGTGTTACCTTATTATTCATATATATG  450

seq1  AATGCTGGTGGTGCACTTCAAACCTGAGTGCTATTGAGGAAGCCATACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGTGGTGCACTTCAAACCTGAGTGCTATTGAGGAAGCCATACCC  500

seq1  AAACACCCCTGGGAGATGTGGCTCTGGTGTTTATAAAACTTTAGCGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCCTGGGAGATGTGGCTCTGGTGTTTATAAAACTTTAGCGAGGC  550

seq1  ATAATTAATAGCAGAATTCAGTCAGATGGGGGAAAGAGGACCAGGTACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAATAGCAGAATTCAGTCAGATGGGGGAAAGAGGACCAGGTACTC  600

seq1  AGACGAGTGAAATCTAACAATTGACCTCATGGAAGTCCAGATAGAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGTGAAATCTAACAATTGACCTCATGGAAGTCCAGATAGAAGAGT  650

seq1  GCAGAGTAGA-GGGGACTTAGCAGAGCATT-GGGGGAGGGTTAACAAACA  698
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GCAGAGTAGAGGGGGACTTAGCAGAGCATTGGGGGGAGGGTTAACAAACA  700

seq1  GGTGCAATGCTGTTGCTTGATGAGAGAAATAAGTTGTGGAGTCCCCGGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAATGCTGTTGCTTGATGAGAGAAATAAGTTGTGGAGTCCCCGGGC  750

seq1  CCAGCAGGGTAAATATCACTAACAA-TGACACATTAC  784
      ||||||||||||||||||||||||| |||||||||||
seq2  CCAGCAGGGTAAATATCACTAACAATTGACACATTAC  787