BAC Information

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BAC

Clone NameB6Ng01-112C14
Chromosome10 (Build37)
Map Location 106,227,987 - 106,343,829
singlet/doubletdoublet
Overlap genePpfia2
Upstream geneBC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C14.bB6Ng01-112C14.g
ACCDH918302DH918303
length821,178
definitionDH918302|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C14, 5' end.DH918303|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,343,748 - 106,343,829)(106,227,987 - 106,229,188)
sequence
gaattcacaaaccttgttaacagcaaacattttctttctactgttctatt
tctctcccctctccctcccctcccctcccctc
gaattcagctagaattaaaatatggatccattttgaagctaattatgtgt
tgatatggtgagagttcctctgtctcactcttggattttgaaataaaaat
agatgaggtgaatcactgttaatcacatgggtataaagcctgaaaattgt
tgtgaaattggtgaggacaataatatgaattttaaactctgagcatgaaa
atccctgtagaactagctctgggttcatgtggatgcaagttaatttttaa
aaataggtgggaaaatttcaagattaattgctttaggggccacctagaaa
ttagaaataaaaaaagttgaataatgtagacagcattatttttcttacta
taagaagtctaagctgggcagtggtgacacatacctttaatcccagaact
tgggaggcagaggcaggaggatttctgagttcaaggccagcctggtctac
agaatgagctccaagacagccagggctacacagagaaaccctgtctctaa
aaataaaaaaataaaaaaaaaaataaaaagtctacacatcttatcttcaa
actcattccaaaatatgtacttcaaattgtttgccaggagtaaggaggta
aaatatattactcccagaacagagaactattgtccggatctaggcaagaa
tttagattgcatttacagggaatcattccattagttattcaacatcatga
acaaataatgtagaaaatgttcaggctttgaaataattatatacagattg
gaaaattagctatgatatattgcttactctaaaaatagatgtatgctttt
gcattcatactctacaagtttccttattagcaaaaataaaactctaaact
tataacactacaggaaatctaagaatatgtttattaaagaatatatttat
taaaatgtttatatcctgtacatgacacataatgtttagtttatggtagc
tactattaatgctagtagttttaaattaggatgtattttactagagtaca
ttttaaaattcatacttgtcttctatgaatagaaaaatcttactatatct
ctataatgaaattttcaagtcataaatattggaaaatcgaataaagtaga
ttcgtataattgctttcttggctatttagaacctatgtaagtcaatcctg
aaattattggaatttaccttttccatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106343748_106343829
seq2: B6Ng01-112C14.b_45_126 (reverse)

seq1  GAGGGGAGGGGAGGGGAGGGAGAGGGGAGAGAAATAGAACAGTAGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGGGGAGGGGAGGGAGAGGGGAGAGAAATAGAACAGTAGAAAGA  50

seq1  AAATGTTTGCTGTTAACAAGGTTTGTGAATTC  82
      ||||||||||||||||||||||||||||||||
seq2  AAATGTTTGCTGTTAACAAGGTTTGTGAATTC  82

seq1: chr10_106227987_106229188
seq2: B6Ng01-112C14.g_68_1245

seq1  GAATTCAGCTAGAATTAAAATATGGATCCATTTTGAAGCTAATTATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTAGAATTAAAATATGGATCCATTTTGAAGCTAATTATGTGT  50

seq1  TGATATGGTGAGAGTTCCTCTGTCTCACTCTTGGATTTTGAAATAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGTGAGAGTTCCTCTGTCTCACTCTTGGATTTTGAAATAAAAAT  100

seq1  AGATGAGGTGAATCACTGTTAATCACATGGGTATAAAGCCTGAAAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGTGAATCACTGTTAATCACATGGGTATAAAGCCTGAAAATTGT  150

seq1  TGTGAAATTGGTGAGGACAATAATATGAATTTTAAACTCTGAGCATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTGGTGAGGACAATAATATGAATTTTAAACTCTGAGCATGAAA  200

seq1  ATCCCTGTAGAACTAGCTCTGGGTTCATGTGGATGCAAGTTAATTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTAGAACTAGCTCTGGGTTCATGTGGATGCAAGTTAATTTTTAA  250

seq1  AAATAGGTGGGAAAATTTCAAGATTAATTGCTTTAGGGGCCACCTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTGGGAAAATTTCAAGATTAATTGCTTTAGGGGCCACCTAGAAA  300

seq1  TTAGAAATAAAAAAAGTTGAATAATGTAGACAGCATTATTTTTCTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAAAAAAAGTTGAATAATGTAGACAGCATTATTTTTCTTACTA  350

seq1  TAAGAAGTCTAAGCTGGGCAGTGGTGACACATACCTTTAATCCCAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTCTAAGCTGGGCAGTGGTGACACATACCTTTAATCCCAGAACT  400

seq1  TGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTAC  450

seq1  AGAATGAGCTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGCTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTCTAA  500

seq1  AAATAAAAAAATAAAAAAAAAAATAAAAAGTCTACACATCTTATCTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAATAAAAAAAAAAATAAAAAGTCTACACATCTTATCTTCAA  550

seq1  ACTCATTCCAAAATATGTACTTCAAATTGTTTGCCAGGAGTAAGGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCCAAAATATGTACTTCAAATTGTTTGCCAGGAGTAAGGAGGTA  600

seq1  AAATATATTACTCCCAGAACAGAGAACTATTGTCCGGATCTAGGCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTACTCCCAGAACAGAGAACTATTGTCCGGATCTAGGCAAGAA  650

seq1  TTTAGATTGCATTTACAGGGAATCATTCCATTAGTTATTCAACATCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTGCATTTACAGGGAATCATTCCATTAGTTATTCAACATCATGA  700

seq1  ACAAATAATGTAGAAAATGTTCAGGCTTTGAAATAATTATATACAGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATGTAGAAAATGTTCAGGCTTTGAAATAATTATATACAGATTG  750

seq1  GAAAATTAGCTATGATATATTGCTTACTCTAAAAATAGATGTATGCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAGCTATGATATATTGCTTACTCTAAAAATAGATGTATGCTTTT  800

seq1  GCATTCATACTCTACAAGTTTCCTTATTAGCAAAAATAAAACTCTAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATACTCTACAAGTTTCCTTATTAGCAAAAATAAAACTCTAAACT  850

seq1  TATAACACTACAGGAAATCTAAGAATATGTTTATTAAAGAATATATTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACTACAGGAAATCTAAGAATATGTTTATTAAAGAATATATTTAT  900

seq1  TAAAATGTTTATATCCTGTACATGACACATAATGTTTAGTTTATGGTAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTATATCCTGTACATGACACATAATGTTTAGTTTATGGTAGC  950

seq1  TACTATTAATGCTAGTAGTTTTAAATTAGGAATGTATTTTAACTAGAGTT  1000
      |||||||||||||||||||||||||||||| ||||||||| ||||||| |
seq2  TACTATTAATGCTAGTAGTTTTAAATTAGG-ATGTATTTT-ACTAGAG-T  997

seq1  ACATTTAAAAATTCATACTTGTCTTCCTTATGAATAAGGAAAAATCTTAC  1050
      |||||| |||||||||||||||||||  ||||||||  ||||||||||||
seq2  ACATTTTAAAATTCATACTTGTCTTC--TATGAATA--GAAAAATCTTAC  1043

seq1  TAATATCTCCTATAAATGAAATTTTCAAAGTCATAAATATGGAAAAATCG  1100
      | |||||| |||| |||||||||||| ||||||||||||| | |||||||
seq2  T-ATATCT-CTAT-AATGAAATTTTC-AAGTCATAAATATTGGAAAATCG  1089

seq1  AATAAAAGTTAGATTCGTATATATGGCCTTTCTTGTGCTATTTTTAGAAA  1150
      ||||||   ||||||||||||  ||  |||||||| ||||  ||||| ||
seq2  AATAAA--GTAGATTCGTATAATTG--CTTTCTTG-GCTA--TTTAG-AA  1131

seq1  ACTATGGAAAAATTAAATTCTTAGATATTATTGGAAATTTACTTTTTCAT  1200
       |||||    || | ||| ||  || |||||||||| ||  ||||| |||
seq2  CCTATG---TAAGTCAATCCT--GAAATTATTGGAATTTACCTTTTCCAT  1176

seq1  CT  1202
      ||
seq2  CT  1178