BAC Information

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BAC

Clone NameB6Ng01-112D04
Chromosome16 (Build37)10 (Build37)
Map Location 69,052,435 - 69,053,564104,053,636 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG626609
Downstream geneSpeer2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112D04.bB6Ng01-112D04.g
ACCDH918328DH918329
length1,140936
definitionDH918328|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D04, 5' end.DH918329|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,052,435 - 69,053,564)(104,053,636 - 104,054,363)
sequence
gaattcacaaaaccaaaccaaatctacccaacactgcaagaacaaagatc
aagtcacataaaataaacaacccactagaataattatcgatcctttgata
ctagcatttaaatttctgtatattccaagttctgaaataacacaattgac
aatacagtgaacctgaacatgaaaaaatcaagctaaagaagtacacaact
atatatatttgattactttcaattcactttatactcattaaggaaagaag
ctgtcaaggcaatattggaattctatagaaaaataagaacaaaaacaaaa
caaagaatctgtggggttaaataaaaccaggaatcaaatggaactaacag
acacctacataatattacactcaagattatgctgttttcaacagatcata
taatattctttaaactagattaatactaagagacaaatctagcttaaaat
tagaaattttaatattttaatagtatccttcattatttctgatcagaaag
aataaatctaaatagaaaaaagtgataagagaaagtaatcaatgaaagga
tgaatcatacattattaaatgattattaaacaaatgaaggcatattaaaa
ataaaagttcttagaatagaatgaaagtatgaatagagaacagaaaacaa
aaacccaaatactatagtatatagagagggcattgattgaagaaatttaa
tagtttcaactgcctacatcaaataattttaaatttctaaaatagagatc
ttccggctgtatactaagactttgtaaaaaaaaaataataaaaaaagtaa
agaaaataatccaaagtagaataaaatttaattaaggccagagcaggagt
gaaacaatatatatcaatgaaatgcagacaataagagcacaatttacaaa
tcaatattaaattatccacaaatataaataagaaatcagtttaagtacat
gtgctttttagaaaagatgaaaatatacttaaacaaatgtaatgtacaat
taggtgaaaggacatctaaacccaacatttgccacctcctacccagaccc
tctcaaacaatctcaatagatcattaagaaattctgaaacacagtggtca
ctaaagaattcctaaaccagatagatcactagagaattct
gaattctcacctgaggaataccgattggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatggaaatcaaaacaaccctgagat
tccacctcataccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaagatccagcaatacctctcctgggc
atatatccagaagatgcccaactggtaagaaggacacatgctccactatg
ttcatagcagctttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtattactcagctattaaaaagaatgagtttatgaaattcctaggcaaa
tggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaag
gaacttgcacaatatgtactcactgataagtgaatattagcccagaaatt
taggatacccaagatataagatacaatttgctaaacacatttaactcaag
agaacgaagaccaaagtgtggacactttaccccttcttagaataggaaac
aaaacacccatggaaggagttacagagacaaagtttggaagtgtgacgaa
aggatggaccatctagtgattgccatatccagagatccatcccatgatca
gcttccaaacgctgacaccattgcatacactagcaagatttttgctgaaa
ggacccagatatagctgtctcttgtgagactatgccagggcctagttgat
atttggttggttttgttgtttgttttcgcaattatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_69052435_69053564
seq2: B6Ng01-112D04.b_47_1186 (reverse)

seq1  ----------------------------AGAATTCTCTAGTGAACCCAAC  22
                                   ||||||| ||||||   | ||
seq2  AGAATTCTCTAGTGATCTATCTGGTTTAGGAATTCTTTAGTGA---CCAC  47

seq1  TGTGTTTTCAGAATTTTCTAATGAATCTATTTGAGATTGTTTTGGAGAGG  72
      |||| |||||||||||  ||||| ||||| ||||||||||||  ||||||
seq2  TGTG-TTTCAGAATTTCTTAATG-ATCTA-TTGAGATTGTTT--GAGAGG  92

seq1  GTCTGGGTAGGAGGTGGCAAATGTTGGGTTTAGATTGTTCCTTTCACCTA  122
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  GTCTGGGTAGGAGGTGGCAAATGTTGGGTTTAGAT--GTCCTTTCACCTA  140

seq1  ATTGTACATTACATTTTGTTTAAGTTATATTTTCATCTTTTTCTAAAAAA  172
      ||||||||||||| |||||||||| |||||||||||| ||||||||||| 
seq2  ATTGTACATTACA-TTTGTTTAAG-TATATTTTCATC-TTTTCTAAAAA-  186

seq1  GGCACATGTACCTTAAACTGATTTCCTTATTTATATTTTGTGGATAATTT  222
       ||||||||| ||||||||||||| |||||||||| ||||||||||||||
seq2  -GCACATGTA-CTTAAACTGATTT-CTTATTTATA-TTTGTGGATAATTT  232

seq1  AATATTGATTTGTAAATTGTGCTCTTATTGTCTGCATTTCATTGATATAT  272
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGATTTGTAAATTGTGCTCTTATTGTCTGCATTTCATTGATATAT  282

seq1  ATTGTTTCACTCCTGCTCTGGCCTTAATTAAATTTTATTCTACTTTGGAT  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCACTCCTGCTCTGGCCTTAATTAAATTTTATTCTACTTTGGAT  332

seq1  TATTTTCTTTACTTTTTTTATTATTTTTTTTTTACAAAGTCTTAGTATAC  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTACTTTTTTTATTATTTTTTTTTTACAAAGTCTTAGTATAC  382

seq1  AGCCGGAAGATCTCTATTTTAGAAATTTAAAATTATTTGATGTAGGCAGT  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGAAGATCTCTATTTTAGAAATTTAAAATTATTTGATGTAGGCAGT  432

seq1  TGAAACTATTAAATTTCTTCAATCAATGCCCTCTCTATATACTATAGTAT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTATTAAATTTCTTCAATCAATGCCCTCTCTATATACTATAGTAT  482

seq1  TTGGGTTTTTGTTTTCTGTTCTCTATTCATACTTTCATTCTATTCTAAGA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTTGTTTTCTGTTCTCTATTCATACTTTCATTCTATTCTAAGA  532

seq1  ACTTTTATTTTTAATATGCCTTCATTTGTTTAATAATCATTTAATAATGT  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTTTTAATATGCCTTCATTTGTTTAATAATCATTTAATAATGT  582

seq1  ATGATTCATCCTTTCATTGATTACTTTCTCTTATCACTTTTTTCTATTTA  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCATCCTTTCATTGATTACTTTCTCTTATCACTTTTTTCTATTTA  632

seq1  GATTTATTCTTTCTGATCAGAAATAATGAAGGATACTATTAAAATATTAA  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTCTTTCTGATCAGAAATAATGAAGGATACTATTAAAATATTAA  682

seq1  AATTTCTAATTTTAAGCTAGATTTGTCTCTTAGTATTAATCTAGTTTAAA  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAATTTTAAGCTAGATTTGTCTCTTAGTATTAATCTAGTTTAAA  732

seq1  GAATATTATATGATCTGTTGAAAACAGCATAATCTTGAGTGTAATATTAT  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATATGATCTGTTGAAAACAGCATAATCTTGAGTGTAATATTAT  782

seq1  GTAGGTGTCTGTTAGTTCCATTTGATTCCTGGTTTTATTTAACCCCACAG  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGTCTGTTAGTTCCATTTGATTCCTGGTTTTATTTAACCCCACAG  832

seq1  ATTCTTTGTTTTGTTTTTGTTCTTATTTTTCTATAGAATTCCAATATTGC  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGTTTTGTTTTTGTTCTTATTTTTCTATAGAATTCCAATATTGC  882

seq1  CTTGACAGCTTCTTTCCTTAATGAGTATAAAGTGAATTGAAAGTAATCAA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAGCTTCTTTCCTTAATGAGTATAAAGTGAATTGAAAGTAATCAA  932

seq1  ATATATATAGTTGTGTACTTCTTTAGCTTGATTTTTTCATGTTCAGGTTC  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAGTTGTGTACTTCTTTAGCTTGATTTTTTCATGTTCAGGTTC  982

seq1  ACTGTATTGTCAATTGTGTTATTTCAGAACTTGGAATATACAGAAATTTA  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTGTCAATTGTGTTATTTCAGAACTTGGAATATACAGAAATTTA  1032

seq1  AATGCTAGTATCAAAGGATCGATAATTATTCTAGTGGGTTGTTTATTTTA  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGTATCAAAGGATCGATAATTATTCTAGTGGGTTGTTTATTTTA  1082

seq1  TGTGACTTGATCTTTGTTCTTGCAGTGTTGGGTAGATTTGGTTTGGTTTT  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTGATCTTTGTTCTTGCAGTGTTGGGTAGATTTGGTTTGGTTTT  1132

seq1  GTGAATTC  1130
      ||||||||
seq2  GTGAATTC  1140

seq1: chr10_104053636_104054363
seq2: B6Ng01-112D04.g_66_580 (reverse)

seq1  CTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAA  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAACTCATTCTTTTTAA  50

seq1  TAGCTCCATTTACATTTAATTTAATTAATGTAATTACAATTAATTAATTT  100
      ||||                                              
seq2  TAGC----------------------------------------------  54

seq1  ATTAATTAAATAATTTAATAATTTAATTGATAAATTAATTTAATTAATTA  150
                                                        
seq2  --------------------------------------------------  54

seq1  ATTTAATTAATTAAATTAAATAATAATTTAATAATAAATTAAATATTTTA  200
                                                        
seq2  --------------------------------------------------  54

seq1  AAATTAATAATAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATT  250
         | | |||||                                      
seq2  ---TGAGTAATA--------------------------------------  63

seq1  AATGTAATTACATTACATTTAATAGCTCCATTGTGTAAATGTACCACATT  300
                               |||||||||||||||||||||||||
seq2  -------------------------CTCCATTGTGTAAATGTACCACATT  88

seq1  TTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCT  350
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCT  138

seq1  GGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCT  400
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  GGCTATTATAAATAAAGCTGCTATGAACATAGTGGAGCATGTGTCCTTCT  188

seq1  TACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGA  450
      |||| ||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TACCAGTT-GGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGA  237

seq1  TCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTT  500
      || || ||||||||||||||||||||||||| |||||||||||| |||||
seq2  TCTTCTGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTT  287

seq1  CCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTC  550
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  CCAGAGTGGTTGTACAAGCTTGCAATTCCACCAACAATGGAGGAGTGTTC  337

seq1  CTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATC  600
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTCATC  387

seq1  TTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTG  650
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TTAGCCATTCTGACTGGTATGAGGTGGAATCTCAGGGTTGTTTTGATTTC  437

seq1  CATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTG  700
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  CATTTCCCTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAG  487

seq1  CCATTCGGTATTCCTCAGGTGAGAATTC  728
      ||| ||||||||||||||||||||||||
seq2  CCAATCGGTATTCCTCAGGTGAGAATTC  515